Mismatch repair mutants in yeast are not defective in transcription- coupled DNA repair of UV-induced DNA damage

Genetics

Volumn 143, Issue 3, 1996, Pages 1127-1135

  Sweder, Kevin S ^a,d   Verhage, Richard A ^b   Crowley, David J ^a   Crouse, Gray F ^c   Brouwer, Jaap ^b   Hanawalt, Philip C ^a  

^a STANFORD UNIVERSITY   (United States)

^b LEIDEN UNIVERSITY   (Netherlands)

^c EMORY UNIVERSITY   (United States)

^d RUTGERS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA;

ARTICLE; BASE MISPAIRING; CONTROLLED STUDY; DNA DAMAGE; DNA REPAIR; DNA TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; ULTRAVIOLET RADIATION;

CELL CYCLE PROTEINS; DNA DAMAGE; DNA REPAIR; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE DELETION; MUTATION; MUTS HOMOLOG 2 PROTEIN; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SCHIZOSACCHAROMYCES POMBE PROTEINS; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

ESCHERICHIA COLI; SACCHAROMYCES CEREVISIAE;

EID: 0029890374     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (66)

1. ALANI, E., N. W. CHI and R. KOLODNER, 1995 The Saccharomyces cerevisiae Msh2 protein specifically binds to duplex oligonucleotides containing mismatched DNA base pairs and insertions. Genes Dev. 9: 234-247.
2. BOHR, V. A., C. A. SMITH, D. S. OKUMOTO and P. C. HANAWALT, 1985 DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40: 359-369.
3. BOYER, J. C., A. UMAR, J. I. RISINGER, J. R. LIPFORD, M. KANE et al., 1995 Microsatellite instability, mismatch repair deficiency and genetic defects in human cancer cell lines. Cancer Res. 55: 6063-6070.
4. BRANCH, P., G. AQUILINA, M. BIGNAMI and P. KARRAN, 1993 Defective mismatch binding and a mutator phenotype in cells tolerant to DNA damage. Nature 362: 652-654.
5. BRANCH, P., R. HAMPSON and P. KARRAN, 1995 DNA mismatch binding defects, DNA damage tolerance, and mutator phenotypes in human colorectal carcinoma cell lines. Cancer Res. 55: 2304-2309.
6. BRONNER, C. E., S. M. BAKER, P. T. MORRISON, G. WARREN, L. G. SMITH et al., 1994 Mutation in the DNA mismatch repair gene homologue hMLH1 is associated with hereditary non-polyposis colon cancer. Nature 368: 258-261.
7. DATTA, A., A. ADJIRI, L. NEW, G. F. GROUSE and S. JINKS-ROBERTSON, 1996 Mitotic crossovers between diverged sequences are regulated by mismatch repair proteins in Saccharomyces cerevisiae. Mol. Cell. Biol. 16: 1085-1093.
8. DONAHUE, B. A., S. YIN, J. S. TAYLOR, D. REINES and P. C. HANAWALT, 1994 Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template. Proc. Natl. Acad. Sci. USA 91: 8502-8506.
9. DRAPKIN, R., J. T. REARDON, A. ANSARI, J. C. HUANG, L. ZAWEL et al., 1994 Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II. Nature 368: 769-772.
10. DRUMMOND, J. T., G.-M. LI, M. J. LONGLEY and P. MODRICH, 1995 Isolation of an hMSH2-p160 heterodimer that restores DNA mismatch repair to tumor cells. Science 268: 1909-1912.
11. FEAVER, W. J., J. Q. SVEJSTRUP, L. BARDWELL, A. J. BARDWELL, S. BURATOWSKI et al., 1993 Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair. Cell 75: 1379-1387.
12. FENG, W.-Y., and J. B. HAYS, 1995 DNA structures generated during recombination initiated by mismatch repair of UV-irradiated nonreplicating phage DNA in Escherichia coli: requirements for helicase, exonucleases, and RecF and RecBCD functions. Genetics 140: 1175-1186.
13. FENG, W.-Y., E. LEE and J. B. HAYS, 1991 Recombinagenic processing of UV-light photoproducts in nonreplicating phage DNA by the Escherichia coli methyl-directed mismatch repair system. Genetics 129: 1007-1020.
14. FISHEL, R., M. K. LESCOE, M. R. RAO, N. G. COPELAND, N. A. JENKINS et al., 1993 The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer. Cell 75: 1027-1038.
15. FISHEL, R., A. EWEL, S. LEE, M. K. LESCOE and J. GRIFFITH, 1994a Binding of mismatched microsatellite DNA sequences by the human MSH2 protein. Science 266: 1403-1405.
16. FISHEL, R., A. EWEL and M. K. LESCOE, 1994b Purified human MSH2 protein binds to DNA containing mismatched nucleotides. Cancer Res. 54: 5539-5542.
17. FISHMAN-LOBELL, J., and J. E. HABER, 1992 Removal of nonhomologous DNA ends in double-strand break recombination: the role of the yeast ultraviolet repair gene RAD1. Science 258: 480-484.
18. FLAMEE, P. A., and W. G. VERLY, 1985 Action of intact AP (apurinic/ apyrimidinic) sites and AP sites associated with breaks on the transcription of T7 coliphage DNA by Escherichia coli RNA polymerase. Biochem. J. 229: 173-181.
19. GAME, J. C., 1983 Radiation-sensitive mutants and repair in yeast, pp. 109-137 in Yeast Genetics: Fundamental and Applied Aspects, edited by J. F. T. SPENCER, D. M. SPENCER and A. R. W. SMITH. Springer-Verlag, New York.
20. GOLDMACHER, V. S., R. A. J. CUZICK and W. G. THILLY, 1986 Isolation and partial characterization of human cell mutants differing in sensitivity to killing and mutation by methylnitrosourea and Nmethyl-N′-nitro-N-nitrosoguanidine. J. Biol. Chem. 261: 12462-12471.
21. HAYNES, R. H., and B. A. KUNZ, 1981 DNA repair and mutagenesis in yeast, pp. 371-414 in The Molecular Biology of the Yeast Saccharomyces: Life Cycle and Inheritance, edited by J. N. STRATHERN, E. W. JONES and J. R. BROACH. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
22. HENNING, K. A., L. LI, N. IYER, L. D. MCDANIEL, M. S. REAGAN et al., 1995 The Cockayne Syndrome Group a gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH. Cell 82: 555-564.
23. IVANOV, E. L., and J. E. HABER, 1995 RAD1 and RAD10, but not other excision repair genes, are required for double-strand break-induced recombination in Saccharomyces cerevisiae. Mol. Cell. Biol. 15: 2245-2251.
24. JONES, M., and R. WAGNER, 1981 N-Methyl-N'-nitro-N-nitrosoguanidine sensitivity of E. coli mutants deficient in DNA methylation and mismatch repair. Mol. Gen. Genet. 184: 562-563.
25. KAT, A., W. G. THILLY, W. H. FANG, M. J. LONGLEY, G. M. LI et al., 1993 An alkylation-tolerant, mutator human cell line is deficient in strand-specific mismatch repair. Proc. Natl. Acad. Sci. USA 90: 6424-6428.
26. KOLODNER, R., 1995 Mismatch repair: mechanisms and relationship to cancer susceptibility. Trends Biochem. Sci. 20: 397-401.
27. KRAMER, W., B. KRAMER, M. S. WILLIAMSON and S. FOGEL, 1989 Cloning and nucleotide sequence of DNA mismatch repair gene PMS1 from Saccharomyces cerevisiae: homology of PMS1 to procaryotic MutL and HexB. J. Bacteriol. 171: 5339-5346.
28. LEACH, F. S., N. C. NICOLAIDES, N. PAPADOPOULOS, B. LIU, J. JEN et al., 1993 Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer. Cell 75: 1215-1225.
29. + revertants and suppressor mutations that modify secondary phenotypes of dam-3 strains of Escherichia coli K-12. Mol. Gen. Genet. 178: 309-315.
30. MELLON, I., and G. N. CHAMPE, 1996 Products of DNA mismatch repair genes mutS and mutL, are required for transcription-coupled nucleotide-excision repair of the lactose operon in Escherichia coli. Proc. Natl. Acad. Sci. USA 93: 1292-1297.
31. MELLON, I., G. SPIVAK and P.C. HANAWALT, 1987 Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51: 241-249.
32. MELLON, I., D. K. RAJPAL, M. KOI, C. R. BOLAND and G. N. CHAMPE, 1996 Transcription-coupled repair deficiency and mutations in human mismatch repair genes. Science 272: 557-560.
33. MIRET, J. J., M. G. MILLA and R. S. LAHUE, 1993 Characterization of a DNA mismatch-binding activity in yeast extracts. J. Biol. Chem. 268: 3507-3513.
34. MODRICH, P., 1991 Mechanisms and biological effects of mismatch repair. Annu Rev Genet 25: 229-253.
35. NICOLAIDES, N. C., N. PAPADOPOULOS, B. LIU, Y. F. WEI, K. C. CARTER et al., 1994 Mutations of two PMS homologues in hereditary nonpolyposis colon cancer. Nature 371: 75-80.
36. PALOMBO, F., P. GALLINARI, I. IACCARINO, T. LETTIERI, M. HUGHES et al., 1995 GTBP, a 160-kilodalton protein essential for mismatch-binding activity in human cells. Science 268: 1912-1914.
37. PAPADOPOULOS, N., N. C. NICOLAIDES, Y. F. WEI, S. M. RUBEN, K. C. CARTER et al., 1994 Mutation of a mutL homolog in hereditary colon cancer. Science 263: 1559-1560.
38. PAPADOPOULOS, N., N. C. NICOLAIDES, B. LIU, R. PARSONS, C. LENGAUER et al., 1995 Mutations of GTBP in genetically unstable cells. Science 268: 1915-1917.
39. PARKER, B. O., and M. G. MARINUS, 1992 Repair of DNA heteroduplexes containing small heterologous sequences in Escherichia coli. Proc. Natl. Acad. Sci. USA 89: 1730-1734.
40. PROLIA, T. A., Q. PANG, E. ALANI, R. D. KOLODNER and R. M. LISKAY, 1994a MLH1, PMS1, and MSH2 interactions during the initiation of DNA mismatch repair in yeast. Science 265: 1091-1093.
41. PROLLA, T. A., D. M. CHRISTIE and R. M. LISKAY 1994b Dual requirement in yeast DNA mismatch repair for MLH1 and PMS1, two homologs of the bacterial mutL gene. Mol. Cell. Biol. 14: 407-415.
42. REENAN, R. A. G., and R. D. KOLODNER, 1992 Characterization of insertion mutations in the Saccharomyces cerevisiae MSH1 and MSH2 genes: evidence for separate mitochondrial and nuclear functions. Genetics 132: 975-985.
43. ROTHSTEIN, R. J., 1983 One-step gene disruption in yeast. Methods Enzymol. 101: 202-211.
44. SAMBROOK, J., E. F. FRITSCH and T. MANIATIS, 1989 Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
45. SAUERBIER, W., and HERCULES, K., 1978 Gene and transcription unit mapping by radiation effects, pp. 329-363 in Annual Reviews Genetics, edited by H. L. ROMAN. Annual Reviews Inc., Palo Alto, CA.
46. SCHAEFFER, L., R. ROY, S. HUMBERT, V. MONCOLLIN, W. VERMEULEN et al., 1993 DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. Science 260: 58-63.
47. SCHAEFFER, L., V. MONCOLLIN, R. ROY, A. STAUB, M. MEZZINA et al., 1994 The ERCC2/DNA repair protein is associated with the class II BTF2/TFIIH transcription factor. EMBO J. 13: 2388-2392.
48. SELBY, C. P., and A. SANCAR, 1990 Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J. Biol. Chem. 265: 21330-21336.
49. SELBY, C. P., and A. SANCAR, 1995 Structure and function of transcription-repair coupling factor. II. Catalytic properties. J. Biol. Chem. 270: 4890-4895.
50. SELBY, C. P., E. M. WITKIN and A. SANCAR, 1991 Escherichia coli mfd mutant deficient in "mutation frequency decline" lacks strand-specific repair: in vitro complementation with purified coupling factor. Prof. Natl. Acad. Sci. USA 88: 11574-11578.
51. SHERMAN, F., G. FINK and J. HICKS, 1986 Laboratory Course Manual for Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
52. SKANDALIS, A., B. N. FORD and B. W. GLICKMAN, 1994 Strand bias in mutation involving 5-methylcytosiue deamination in the human hprt gene. Mutat. Res. 314: 21-26.
53. STRAND, M., T. A. PROLLA, R. M. LISKAY and T. D. PETES, 1993 Destabilization of tracts of simple repetitive DNA in yeast by mutations affecting DNA mismatch repair. Nature 365: 274-276.
54. STRAND, M., M. C. EARLEY, G. F. CROUSE and T. D. PETES, 1995 Mutations in the MSH3 gene preferentially lead to deletions within tracts of simple repetitive DNA in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 92: 10418-10421.
55. SWEDER, K. S., 1994 Nucleotide excision repair in yeast. Curr. Genet. 27: 1-16.
56. SWEDER, K. S., and P. C. HANAWALT, 1992 Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc. Natl. Acad. Sci. USA 89: 10696-10700.
57. SWEDER, K. S., and P. C. HANAWALT, 1994 The COOH terminus of suppressor of stem loop (SSL2/Rad25) in yeast is essential for overall genomic excision repair and transcription-coupled tepair. J. Biol. Chem. 269: 1852-1857.
58. VAN GOOL, A. J., R. VERHAGE, S. M. SWAGEMAKERS, P. VAN DE PUTTE, J. BROUWER et al., 1994 RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6. EMBO J. 13: 5361-5369.
59. VAN HOFFEN, A., A. T. NATARAJAN, L. V. MAYNE, A. A. VAN ZEELAND, L. H. F. MULLENDERS et al., 1993 Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells. Nucleic Acids Res. 21: 5890-5895.
60. VENEMA, J., L. H. F. MULLENDERS, A. T. NATARAJAN, A. A. VAN ZEELAND and L. V. MAYNE, 1990 The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA. Proc. Natl. Acad. Sci. USA 87: 4707-4711
61. VERHAGE, R., A. M. ZEEMAN, N. DE GROOT, F. GLEIG, D. D. BANG et al., 1994 The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 14: 6135-6142.
62. VERHAGE, R., A. J. VAN GOOL, N. DE GROOT, J. H. J. HOEIJMAKERS, P. VAN DE PUTTE et al., 1996 Double mutants of Saccharomyces cerevisiae with alterations in global genome and transcription-coupled repair. Mol. Cell. Biol. 16: 496-502.
63. WANG, Z., J. Q. SVEJSTRUP, W. J. FEAVER, X. WU, R. D. KORNBERG et ed., 1994 Transcription factor b (TFIIH) is required during nuclcotide excision repair in yeast. Nature 368: 74-76.
64. WILLIAMSON, M. S., J. C. GAME and S. FOGEL, 1985 Meiotic gene conversion mutants in Saccharomyces cerevisiae. I. Isolation and characterization of pms1 - 1 and pms1 - 2. Genetics 110: 609-646.
65. 6-methylguanine DNA methyltransferase-deficient yeast cells. Carcinogenesis 16: 1933-1939.
66. ZHOU, W., and P. W. DOETSCH, 1993 Effects of abasic sites and DNA single-strand breaks on prokaryotic RNA polymerases. Proc. Natl. Acad. Sci. USA 90: 6601-6605.