Phylogenetic footprinting of the human cytochrome c oxidase subunit Vb promoter

Archives of Biochemistry and Biophysics

Volumn 333, Issue 1, 1996, Pages 152-162

  Bachman, Nancy J ^a   Yang, Tony L ^a   Dasen, Jeremy S ^a   Ernst, Robin E ^a   Lomax, Margaret I ^a  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

cytochrome c oxidase; electron transfer chain; mitochondria; respiratory gene; transcription regulation

Indexed keywords

CYTOCHROME C OXIDASE;

ARTICLE; BINDING SITE; DNA FOOTPRINTING; HUMAN; MITOCHONDRION; PHYLOGENY; PRIORITY JOURNAL; PROMOTER REGION; RESPIRATORY CHAIN;

EID: 0030249971     PISSN: 00039861     EISSN: None     Source Type: Journal    
DOI: 10.1006/abbi.1996.0376     Document Type: Article

References (71)

1. 1. Hatefi, Y. (1985) Annu. Rev. Biochem. 54, 1015-1069.
2. 2. Capaldi, R. A. (1990) Annu. Rev. Biochem. 59, 569-596.
3. 3. Kadenbach, B., Kuhn-Nentwig, L., and Buge, U. (1987) Curr. Top. Bioenerg. 15, 113-161.
4. 4. Capaldi, R. A., Takamiya, S., Zhang, Y. Z., Gonzalez-Halphen, and Yanamura, W. (1987) Curr. Top. Bioenerg. 15, 91-112.
5. 5. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1995) Science 269, 1069-1074.
6. 6. Chomyn, A., and Attardi, G. (1987) Curr. Top. Bioenerg. 15, 295-329.
7. 7. Bisson, R., and Schiavo, G. (1986) J. Biol. Chem. 261, 4373-4376.
8. 8. Taanman, J.-W., and Capaldi, R. A. (1992) J. Biol. Chem. 267, 22481-22485.
9. 9. Kadenbach, B., Jarausch, J., Hartmann, R., and Merle, P. (1983) Anal. Biochem. 129, 517-521.
10. 10. Yanamura, W., Zhang, Y. Z., Takamiya, S., and Capaldi, R. A. (1988) Biochemistry 27, 4909-4914.
11. 11. Pfanner, N., Sollner, T., and Neupert, W. (1991) Trends Biochem. Sci. 16, 63-67.
12. 12. Dowhan, W., Bibus, C. R., and Schatz, G. (1985) EMBO J. 4, 179-184.
13. 13. Trueblood, C. E., and Poyton, R. O. (1987) Mol. Cell Biol. 7, 3520-3526.
14. 14. Aggeler, R., and Capaldi, R. A. (1990) J. Biol. Chem. 265, 16389-16393.
15. 15. Wright, R. M., Dircks, L. K., and Poyton, R. O. (1986) J. Biol. Chem. 261, 17183-17191.
16. 16. McEwen, J. E., Ko, C., Kloecker-Gruissem, B., and Poyton, R. O. (1986) J. Biol. Chem. 261, 11872-11879.
17. 17. McEwen, J. E., Cumsky, M. G., Ko, C., Power, S. D., and Poyton, R. O. (1984) J. Cell Biochem. 24, 229-242.
18. 18. Patterson, T. E., and Poyton, R. O. (1986) J. Biol. Chem. 261, 17192-17197.
19. 19. Ewart, G. D., Zhang, Y. Z., and Capaldi, R. A. (1991) FEBS Lett. 292, 79-84.
20. 20. Seelan, R. S., and Grossman, L. I. (1991) J. Biol. Chem. 266, 19752-19757.
21. 21. Lightowlers, R., Ewart, G., Aggeler, R., Zhang, Y. Z., Calavetta, L., and Capaldi, R. A. (1990) J. Biol. Chem. 265, 2677-2681.
22. 22. Lomax, M. I., and Grossman, L. I. (1989) Trends Biochem. Sci. 14, 501-503.
23. 23. Anthony, G., Reimann, A., and Kadenbach, B. (1993) Proc. Natl. Acad. Sci. USA 90, 1652-1656.
24. 24. Taanman, J.-W., Turina, P., and Capaldi, R. A. (1994) Biochemistry 33, 11833-11841.
25. 25. Yamada, M., Amuro, N., Goto, Y., and Okazaki, T. (1990) J. Biol. Chem. 265, 7687-7692.
26. 26. Carter, R. S., and Avadhani, N. G. (1991) Arch. Biochem. Biophys. 288, 97-106.
27. 27. Bachman, N. J. (1995) Gene 162, 313-318.
28. 28. Lomax, M. I., Hsieh, C. L., Darras, B. T., and Francke, U. (1991) Genomics 10, 1-9.
29. 29. Hoshinaga, H., Amuro, N., Goto, Y., and Okazaki, T. (1994) J. Biochem. 115, 194-201.
30. 30. Basu, A., and Avadhani, N. G. (1991) J. Biol. Chem. 266, 15450-15456.
31. 31. Smith, E. O., and Lomax, M. I. (1993) Biochem. Biophys. Acta 1174, 63-71.
32. 31a. Mell, O. C., Seibel, P., and Kadenbach, B. (1994) Gene 140, 179-186.
33. 31b. Wan, B., and Moreadith, R. W. (1995) Gene 270, 26433-26440.
34. 32. Taanman, J-W., van der Veen, A. Y., Schrage, C., de Vries, H., and Buys, C. H. C. M. (1991) Hum. Genet. 87, 325-327.
35. 33. Suske, G., Enders, C., Schlerf, A., and Kadenbach, B. (1988) DNA 7, 163-171.
36. 34. Seelan, R. S., and Grossman, L. I. (1992) Biochemistry 31, 4696-4704.
37. 35. Seelan, R. S., and Grossman, L. I. (1993) Genomics 18, 527-536.
38. 36. Seelan, R. S., Gopalakrishnan, L., Scarpulla, R. C., and Grossman, L. I. (1996) J. Biol. Chem. 271, 2122-2120.
39. 37. Hegeman, A. D., Brown, J. S., and Lomax, M. I. (1995) Biochim. Biophys. Acta 1261, 311-314.
40. 38. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. USA 74, 5463-5467.
41. 39. Chomczynski, P., and Sacchi, N. (1987)Anal. Biochem. 162, 156-159.
42. 40. Boorstein, W. R., and Craig, E. A. (1989) Methods Enzymol. 180, 347-369.
43. 41. Huggenvik, J. I., Collard, M. W., Stofko, R. E., Seasholtz, A. F., and Uhler, M. D. (1991) Mol. Endocrinol. 5, 921-930.
44. 42. Graham, F. L., and van der Eb, A. J. (1973) Virology 52, 456-467.
45. 43. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning, A Laboratory Manual, second edition, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
46. 44. Seed, B., and Sheen, J. Y. (1988) Gene 67, 271-277.
47. 45. Dignam, J. D., Lebovitz, R. M., and Roeder, R. G. (1983) Nucleic Acids Res. 11, 1475-1489.
48. 46. Zeviani, M., Sakoda, S., Sherbany, A. A., Nakase, H., Rizzuto, R., Samitt, C. E., DiMauro, S., and Schon, E. A. (1988) Gene 65, 1-11.
49. 47. Bird, A. P. (1987) Trends Genet. 3, 342-347.
50. 48. Dynan, W. S., and Tjian, R. (1983) Cell 35, 79-87.
51. 49. Nagely, P. (1991) Trends Genet. 7, 1-4.
52. 50. Evans, M. J., and Scarpulla, R. C. (1990) Genes Dev. 4, 1023-1034.
53. 51. Virbasius, J. V., and Scarpulla, R. C. (1991) Mol. Cell Biol. 11, 5631-5638.
54. 52. Carter, R. S., Bhat, N. K., Basu, A., and Avadhani, N. G. (1992) J. Biol. Chem. 267, 23418-23426.
55. 53. Basu, A., Park, K., Atchison, M. L., Carter, R. S., and Avadhani, N. G. (1993) J. Biol. Chem. 268, 4188-4196.
56. 54. Virbasius, J. V., Virbasius, C-M. A., and Scarpulla, R. C. (1993) Genes Dev. 7, 380-392.
57. 55. Pierce, D. J., Jordan, E. M., and Breen, G. A. M. (1992) Biochim. Biophys. Acta 1132, 265-275.
58. 56. Karim, F. D., Urness, L. D., Thummel, C. S., Klemsz, M. J., McKercher, S. R., Celada, A., Van Beveren, C., Maki, R. A., Gunther, C. V., Nye, J. A., and Graves, B. J. (1990) Genes Dev. 4, 1451-1453.
59. 57. Lee, W., Haslinger, A., Karin, M., and Tjian, R. (1987) Nature 325, 369-372.
60. 58. Mitchell, P. J., Wang, C., and Tjian, R. (1987) Cell 50, 847-861.
61. 59. Suzuki, H., Hosokawa, Y., Toda, H., Nishikimi, M., and Ozawa, T. (1990) J. Biol. Chem. 265, 8159-8163.
62. 60. Chang, D. D., and Clayton, D. A. (1987) Science 235, 1178-1184.
63. 61. Deininger, P. L., Jolly, D. J., Rubin, C. M., Friedmann, T., and Schmid, C. W. (1981) J. Mol. Biol. 151, 17-33.
64. 62. Smale, S. T., and Baltimore, D. (1989) Cell 57, 103-113.
65. 63. Tagle, D. A., Koop, B. F., Goodman, M., Slightom, J. L., Hess, D. L., and Jones, R. T. (1988) J. Mol. Biol. 203, 439-455.
66. 64. Gumucio, D. L., Blanchard-McQuate, K. L., Heilstedt-Williamson, H. Tagle, D. A., Gray, T. A., Tarle, S. A., Gragowski, L., Goodman, M., Slightom, J. L., and Collins, F. S. (1991) in The Regulation of Hemoglobin Switching. Proceedings of the Seventh Conference on Hemoglobin Switching (Stamatoyannopoulos, G., and Nienhuis, A. W., Eds.), The Johns Hopkins University Press, Baltimore, MD.
67. 65. Hayasaka, K., Fitch, D. H. A., Slightom, J. L., and Goodman, M. (1992) J. Mol. Biol. 224, 875-881.
68. 66. Gumucio, D. L., Heilstedt-Williamson, H., Gray, T. A., Tarle, S. A., Shelton, D. A., Tagle, D. A., Slightom, J. L., Goodman, M., and Collins, F. S. (1992) Mol. Cell Biol. 12, 4919-4929.
69. 67. Gumucio, D. L., Shelton, D. A., Bailey, W. J., Slightom, J. L., and Goodman, M. (1993) Proc. Natl. Acad. Sci. USA 90, 6018-6022.
70. 68. Gumucio, D. L., Shelton, D. A., Blanchard-McQuate, K., Gray, T., Tarle, S., Heilstedt-Williamson, H., Slightom, J. L., Collins, F., and Goodman, M. (1994) J. Biol. Chem. 269, 15371-15380.
71. 69. Virbasius, J. V., and Scarpulla, R. C. (1994) Proc. Natl. Acad. Sci. USA 91, 1309-1313.