Analysis and comparison of the mouse and human immunoglobulin heavy chain JH-Cμ-Cδ locus

Molecular Phylogenetics and Evolution

Volumn 5, Issue 1, 1996, Pages 33-49

  Koop, B F ^a   Richards, J E ^b   Durfee, T D ^d   Bansberg, J ^d   Wells, J ^d   Gilliam, A C ^c   Chen, H L ^c   Clausell, A ^c   Tucker, P W ^c   Blattner, F R ^d  

^a UNIVERSITY OF VICTORIA   (Canada)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^c UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^d UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; IMMUNOGLOBULIN HEAVY CHAIN; IMMUNOGLOBULIN J CHAIN; IMMUNOGLOBULIN MU CHAIN;

ANIMAL; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; GENETICS; HUMAN; IMMUNOGLOBULIN GENE; MOLECULAR GENETICS; MOUSE; NUCLEOTIDE SEQUENCE; SEQUENCE HOMOLOGY;

ANIMALS; BASE SEQUENCE; CHROMOSOME MAPPING; DNA; GENES, IMMUNOGLOBULIN; HUMANS; IMMUNOGLOBULIN DELTA-CHAINS; IMMUNOGLOBULIN HEAVY CHAINS; IMMUNOGLOBULIN J-CHAINS; IMMUNOGLOBULIN MU-CHAINS; MICE; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 16144366928     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1996.0005     Document Type: Article

References (45)

1. Bentaboulet, M., Mihaesco, E., Gendron, M. C., Brouet, J. C., and Tsapis, A. (1989). Genomic alterations in a case of alpha heavy chain disease leading to the generation of the composite from the JH region. Eur. J. Immunol. 19: 2093-2098.
2. Blattner, F. R., and Tucker, P. W. (1984). Molecular biology of IgD. Nature 307: 417-422.
3. Cheng, H. L., Blattner, F. R., Fitzmaurice, L., Mushinski, J. F., and Tucker, P. W. (1982). Structure of secreted and membrane exons for murine IgD. Nature 296: 410-415.
4. Cook, G. P., Tomlinson, I. M., Walter, G., Riethman, H., Carter, N. P., Buluwela, L., Winger, G., and Rabbitts, T. H. (1994). A map of the human immunoglobulin VH locus completed by analysis of the telomeric region of chromosome 14q. Nat. Genet. 7: 162-168.
5. den Dunnen, J. T., van Neck, J. W., Cremers, F. P. M., Lubsen, N. H., and Schoenmakers, J. G. G. (1989). Nucleotide sequence of the rat g-crystallin gene region and comparison with an ortologous human region. Gene 78: 201-213.
6. Early, P., Huang, H., Davis, M., Calame, K., and Hood, L. (1980). An immunoglobulin heavy chain variable region gene is generated from three segments of DNA: V-H, D, and J-H. Cell 19: 981-992.
7. Epp, T. A., Dixon, I. M. C., Wang, H.-Y., Sole, M. J., and Liew, C.-C. (1993). Structural organization and evolution of the human α-myosin heavy chain gene (MYH6). Genomics 18: 505-526.
8. Epp, T. A., Wang, R., and Liew, C.-C. (1995). Concerted evolution of mammalian cardiac muscle heavy chain genes. J. Mol. Evol. 41: 284-289.
9. Gilliam, A. C., Shen, A., Richards, J. E., Blattner, F. R., Mushinski, J. F., and Tucker, P. W. (1984). Illegitimate recombination generates class switch from Cμ to Cδ in an IgD-secreting plasmacytoma. Proc. Natl. Acad. Sci. USA 81: 4164-4168.
10. Gillies, S. D., Morrison, S. L., Oi, V. T., and Tonegawa, S. (1983). A tissue specific transcription enhancer element is located in the major intron of a rearranged immunoglobulin heavy chain gene. Cell 33: 717-728.
11. Goldberg, G. I., Vanin, E. F., Zrolka, A. M., and Blattner, F. R. (1981). Sequence of the gene for the constant region of the μ chain of Balb/ C mouse immunoglobulin. Gene 15: 33-42.
12. Gough, N. M., and Bernard, O. (1981). Sequences of the joining region genes for immunoglobulin heavy chains and their role in generation of antibody diversity. Proc. Natl. Acad. Sci. USA 78: 509-513.
13. Hanzlik, A. J., Binder, M., Layton, W. M., Rowe, L., Taylor, B. A., Osemlak, M. M., Richards, J. E., Kurnit, D. M., and Stewart, G. D. (1990). The murine situs invesus asymmetry is linked tightly to the IgH-C cluster on chromosome 12. Genomics 7: 1-5.
14. Hardison, R., and Miller, W. (1993). Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters. Mol. Biol. Evol. 10: 73-102.
15. Hardison, R., Chao, K-M., Schwartz, S., Stojanovic, N., Ganetsky, M., and Miller, W. (1994). Globin gene server: A prototype E-mail database server featuring extensive multiple alignments and data compilation for electron genetic analysis. Genomics 21: 344-353.
16. Huang, X., and Miller, W. (1991). A time efficient, linear space local similarity algorithm. Adv. Appl. Math. 12: 337-357.
17. H genes. Proc. Natl. Acad. Sci. USA 79: 2996-3000.
18. Kim, S., Davis, M., Sinn, E., Patten, P., and Hood, L. (1981). Antibody diversity: Somatic hypermutation of rearranged C-H genes. Cell 27: 573-581.
19. Koop, B. F. (1994). Human and rodent genomes: Discrepant patterns of DNA sequence similarity. Anim. Biotechnol. 5: 89-102.
20. Koop, B. F. (1995). Human and rodent DNA sequence comparisons: A mosaic model of genomic evolution. Trends Genet. 11: 367-373.
21. Koop, B. F., and Hood, L. (1994). Striking sequence similarity extending over 100 kb of human and mouse T-cell receptor DNA. Nat. Genet. 7: 48-53.
22. Koop, B. F., Rowen, L., Wang, K., Kuo, C-L., Seto, D., Lenstra, J. A., Howard, S., Shan, W., Deshpande, P., and Hood, L. (1994). The human T-cell receptor Cδ to Cα region: Organization, sequence, and evolution of 97.6 kb of DNA. Genomics 19: 478-493.
23. Koop, B. F., Wilson, R. K., Wang, K., Vernooij, B., Zaller, D., Kuo, C. L., Seto, D., Toda, M., and Hood, L. (1992). Organization, structure and function of 95 kb spanning the murine T-cell receptor Cδ to Cα region. Genomics 13: 1209-1230.
24. Lamerdin, J. E., Montgomery, M. A., Stilwagen, S. A., Scheidecker, L. K., Tebbs, R. S., Brookman, K. W., Thompson, L. H., and Carrano, A. V. (1995). Genomic sequence comparison of the human and mouse XRCC1 DNA repair gene regions. Genomics 25: 547-554.
25. Lang, P., and Mocikat, R. (1991). Immunoglobulin heavy-chain joining genes in the rat: Comparison of mouse and human. Gene 102: 261-264.
26. Liew, C.-C., Sole, M. J., Yamauchi-Takihara, K., Kellam, B., Anderson, D. H., Lin, L., and Liew, J. C. (1990). Complete sequence and organization of the human cardiac β-myosin heavy chain gene. Nucleic Acids Res. 18: 3647-3651.
27. Maki, R., Traunecker, A., Sakano, H., Roeder, W., and Tonegawa, S. (1980). Exon shuffling generates an immunoglobulin heavy chain gene. Proc. Natl. Acad. Sci. USA 77: 2138-2142.
28. Maxam, A. M., and Gilbert, W. (1980). Sequencing an end-labelled DNA with base-specific chemical cleavage. Methods Enzymol. 68: 499-560.
29. Mills, F.C., Brooker, J.S., and Camerini-Otero, R.D. (1990).Sequences of human immunoglobulin switch regions: Implications, recombination and transcription. Nucleic Acids Res. 18: 7305-7316.
30. Motomura, M., Kitamura, D., Araki, K., Maeda, H., Kudo, A., and Watanabe, T. (1987). The cis-acting regulatory elements of immunoglobulin heavy chain gene involved in enhanced immunoglobulin production after lipopolysaccharide (LPS) stimulation. Mol. Immunol. 24: 759-764.
31. Mullis, K., Faloona, F., Scharf, S., Saiki, R., Horn, G., and Erlich, H. (1986). Specific enzymatic amplification of DNA in vitro: The polymerase chain reaction. Cold Spring Harbor Symp. Quant. Biol. 51: 263-273.
32. Newell, N., Richards, J. E., Tucker, P. W., and Blattner, F. R. (1980). J genes for heavy chain immunoglobulins of mouse. Science 209: 1128-1132.
33. Nikaido, T., Nakai, S., and Honjo, T. (1981). Switch region of immunoglobulin Cμ gene is composed of simple tandem repetitive sequences. Nature 292: 845-848.
34. Okamura, K., Ishiguro, H., Ichihara, Y., and Kurosawa, Y. (1993). Comparison of nucleotide sequences from upstream of the DQ52 gene to the Smu region of immunoglobulin heavy-chain gene loci between Suncus murinus, mouse and human. Mol. Immunol. 30: 461-467.
35. Pohl, F. M., and Jovin, T. M. (1972). Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC). J. Mol. Biol. 67: 375-396.
36. Ravetch, J. V., Siebenlist, U., Korsmeyer, S., Waldmann, T., and Leder, F. (1981). Structure of human immunoglobulin mu locus: Characterization of embryonic and rearranged J and D genes. Cell 27: 583-591.
37. Richards, J. E., Gilliam, A. C., Shen, A., Tucker, P. W., and Blattner, F. R. (1983). Unusual sequences in the murine immunoglobulin m-delta heavy-chain region. Nature 306: 483-487.
38. Sakano, H., Maki, R., Kurosawa, Y., Roeder, W., and Tonegawa, S. (1980). Two types of somatic recombination are necessary for the generation of complete immunoglobulin heavy chain genes. Nature 286: 676-683.
39. Staudt, L., and Lenardo, M. J. (1991). Immunoglobulin gene transcription. Annu. Rev. Immunol. 9: 373-398.
40. Tucker, P.W., Liu, C.-P., Mushinski, J. F., and Blattner, F. R. (1980). Mouse immunoglobulin D: Messenger RNA and genomic DNA sequences. Science 209: 1353-1360.
41. Uberbacker, E., and Mural, R. J. (1991). Locating protein coding regions in human DNA sequences by a multiple sensor-neural network approach. Proc. Natl. Acad. Sci USA 88: 11261-11265.
42. Weber, J. L., and May, P. E. (1989). Abundant classes of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-396.
43. Wilbur, W. J., and Lipman, D. J. (1983). Rapid similarity searches of nucleic acid and protein databanks. Proc. Natl. Acad. Sci. USA 80: 726-730.
44. Word, C. J., White, M. B., Kuziel, W. A., Shen, A. L., Blattner, F. R., and Tucker, P. W. (1989). Human immunoglobulin Cμ-Cδ locus: Complete nucleotide sequence and structural analysis. Int. Immunol. 1(3): 296-309.
45. Yuan, D., Gilliam, A. C., and Tucker, P. W. (1985). Regulation of expression of immunoglobulins M and D in murine B cells. Fed. Proc. 44: 2652-2659.