Chemical, spectroscopic and structural investigation of the substrate-binding site in ascorbate peroxidase

European Journal of Biochemistry

Volumn 248, Issue 2, 1997, Pages 347-354

  Hill, Adrian P ^a   Modi, Sandeep ^a   Sutcliffe, Michael J ^a   Turner, Daniel D ^a   Gilfoyle, David J ^a   Smith, Andrew T ^b   Tam, Beatrice M ^c   Lloyd, Emma ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

^b UNIVERSITY OF SUSSEX   (United Kingdom)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

Ascorbate peroxidase; Binding site; Heme; Peroxidase

Indexed keywords

ASCORBATE OXIDASE; PEROXIDASE; RECOMBINANT ENZYME;

ARTICLE; BINDING AFFINITY; BINDING SITE; ELECTRON SPIN RESONANCE; ENZYME BINDING; ENZYME STRUCTURE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRIORITY JOURNAL;

EID: 0030886448     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.00347.x     Document Type: Article

References (90)

1. Abola, E. E., Bernstein, F. C., Bryant, S. H., Koetzle, T. F. & Weng, J. (1987) in Crystallographic databases - information content, software systems, scientific applications (Allen, F. H., Bergerhoff, G. & Sievers, R., eds) pp. 107-132, Data Commission of the International Union of Crystallography, Bonn.
2. Adak, S., Bhattacharyya, D. K., Mazumder, A., Bandyopadhyay, U. & Banerjee, R. K. (1995) Biochemistry 34, 12998-13006.
3. Adak, S., Mazumder, A. & Banerjee, R. K. (1996) Biochem. J. 314, 985-991.
4. Antonini, M. & Brunori, E. (1971) in Hemoglobin and myoglobin and their reactions with ligands (Neuberger, A. & Tatum, E. L., eds) pp. 10-12. North Holland Publishers, Amsterdam.
5. Ator, M. A. & Ortiz de Montellano, P. R. (1987a) J. Biol. Chem. 262, 1542-1551.
6. Ator, M. A. & Ortiz de Montellano, P. R. (1987b) J. Biol, Chem. 262, 14954-14960.
7. Banci, L., Bertini, I., Bini, T., Tien, M. & Turano, P. (1993) Biochemistry 32, 5825-5831.
8. Bernstein, F. C., Koetzle, T. F. Williams, G. J. B., Meyer, E. F., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanovichi, T. & Tasumi, M. (1977) J. Mol. Biol. 112, 535-542.
9. Bhattacharyya, D. K., Bandyopadhyay, U. & Banerjee, R. K. (1993) J. Biol. Chem. 268, 22 292-22 298.
10. Bonagura, C. A., Munirathinam, S., Pappa, H. S., Patterson, W. R. & Poulos, T. L. (1996) Biochemistry 35, 6107-6115.
11. Burns, P. S., Williams, R. J. P. & Wright, P. E. (1975) J. Chem. Soc. Chem. Commun. 795-796.
12. Davey, C. A. & Fenna, R. E. (1996) Biochemistry 35, 10967-10973.
13. de Duve, C. (1948) Acta Chem. Scand. 2, 264-289.
14. De Phillis, G. D. & Ortiz de Montellano, P. R. (1989) Biochemistry 28, 7947-7952.
15. de Ropp, J. S., Chen, Z. & La Mar, G. N. (1995) Biochemistry 34, 13477-13484.
16. Dwek, R. A. (1973) NMR in Biochemistry: Oxford University Press, Oxford.
17. English, A. M. (1994) in Encyclopedia of inorganic chemistry: iron: haem proteins, peroxidases and catalases (King, R. B., ed.) vol. 4, pp. 1682-1697, Wiley, Chichester.
18. English, A. M. & Tsaprailis, G. (1995) Adv. Inorg. Chem. 43, 79-125.
19. Erman, J. E., Vitello, L. B., Miller, M. A. & Kraut, J. (1992) J. Am. Chem. Soc. 114, 6592-6593.
20. Erman, J. E., Vitello, L. B., Miller, M. A., Shaw, A., Brown, K. A. & Kraut, J. (1993) Biochemistry 32, 9798-9806.
21. Everse, J., Everse, K. E. & Grisham, M. B. (1991) Peroxidases in Chemistry and Biology, CRC Press, Boca Raton FL.
22. Ferrer, J. C., Turano, P., Banci, L., Bertini, I., Morris, I. K., Smith, K. M., Smith, M. & Mauk, A. G. (1994) Biochemistry 33, 7819-7829.
23. Fidy, J. & Paul, K. G. (1989) Biochemistry 28, 7531-7541.
24. Finzil, B. C., Poulos, T. L. & Kraut, J. (1984) J. Biol. Chem. 259, 13027-13036.
25. Frew, J. E. & Jones, P. (1984) in Advances in Inorganic and Bioinorganic Mechanisms (Sykes, A. G., ed.) vol. 3, pp. 175-212, Academic Press, London.
26. Gilfoyle, D. J., Neptuno Rodriguez-Lopez, J. & Smith, A. T. (1996) Eur. J. Biochem. 236, 714-722.
27. Harris, R. Z., Wariishi, H., Gold, M. H., Ator, M. A. & Ortiz de Montellano, P. R. (1991) J. Biol. Chem. 266, 8751-8758.
28. Henricksen, A. & Gajhede, M. (1995) Acta Crys. D51, 121-123.
29. Holzbaur, I. E., English, A. M & Ismail, A. A. (1996) J. Am. Chem. Soc. 118, 3354-3359.
30. Hosoya, T., Sakurada, J., Kurokawa, C., Toyoda, R. & Nakamura, S. (1989) Biochemistry 28, 2639-2644.
31. Kelley, L. A., Gardner, S. P. & Sutcliffe, M. J. (1996) Protein Eng. 9, 1063-1065.
32. Kitagawa, T., Hashimoto, S., Teraoka, J., Nakumara, S., Yajima, H. & Toichiro, H. (1983) Biochemistry 22, 2788-2792.
33. Kunishima, N., Pukuyama, K., Matsubara, H., Hatanaka, H., Shibano, Y. & Amachi, T. (1994) J. Mol. Biol. 235, 331-344.
34. Jardetzky, O. & Roberts, G. C. K. (1981) NMR in Molecular Biology, Academic Press, New York.
35. La Mar, G. N., Hernandez, G. & de Ropp, J. S. (1992) Biochemistry 31, 9158-9168.
36. La Mar, G. N., Chen, Z., Vyas, K. & McPherson, A. D. (1995) J. Am. Chem. Soc. 117, 411-419.
37. Laskowski, R. A. (1995) J. Mol. Graph. 13, 323-330.
38. Leigh, J. S., Maltempo, M. M., Ohlsson, P. I. & Paul, K. G. (1975) FEBS Lett. 51, 304-308.
39. Mauro, J. T., Miller, M. A., Edwards, S. L., Wang, J., Fishel, L. A. & Kraut, J. (1989) Metal Ions Biol. Syst. 27, 477-503.
40. Miller, V. P., De Phillis, G. D., Ferrer, J. C., Mauk, A. G. & Ortiz de Montellano, P. R. (1992) J. Biol. Chem. 267, 8936-8942.
41. Miller, V. P., Goodin, D. B., Friedman, A. E., Hartmann, C. & Ortiz de Montellano, P. R. (1995) J. Biol. Chem. 270, 18413-18419.
42. Mittler, R. & Zilinskas, B. A. (1991) FEBS Lett. 289, 257-259.
43. Modi, S., Behere, D. V. & Mitra, S. (1989) Biochem. Biophys. Acta 996, 214-225.
44. Modi, S., Primrose, W. U., Boyle, J. M. B., Gibson, C. F., Lian, L.-Y. & Roberts, G. C. K. (1995) Biochemistry 34, 8982-8988.
45. Modi, S., Paine, M. J., Sutcliffe, M. J., Lian, L.-Y., Primrose, W. U., Wolf, C. R. & Roberts, G. C. K. (1996a) Biochemistry 35, 4540-4550.
46. Modi, S., Sutcliffe, M. J., Primrose, W. U., Lian, L.-Y. & Roberts, G. C. K. (1996b) Nat. Struct. Biol. 3, 414-417.
47. Morishima, I. & Ogawa, S. (1979) J. Biol. Chem. 254, 2814-2820.
48. Morishima, I., Ogawa, S., Inubushi, T. & Yonezawa, T. (1977) FEBS Lett. 8, 177-181.
49. Neptuno Rodriguez-Lopez, J., Smith, A. T. & Thorneley, R. N. F. (1996) J. Biol. Chem. 271, 4023-4030.
50. Newmeyer, S. L. & Ortiz de Montellano, P. R. (1995) J. Biol. Chem. 270, 19430-19438.
51. Ortiz de Montellano, P. R. & Kerr, D. E. (1983) J. Biol. Chem. 258, 10558-10563.
52. Ozaki, S.-I. & Ortiz de Montellano, P. R. (1995) J. Am. Chem. Soc. 117, 7056-7064.
53. Paul, K. G., Theorell, H. & Åkeson, Å. (1953) Acta Chem. Scand. 7, 1284-1287.
54. Paul, K. G. & Ohlsson, P. I. (1978) Acta Chem. Scand. B32, 395-404.
55. Patterson, W. R & Poulos, T. L. (1994) J. Biol. Chem. 269, 17020-17024.
56. Patterson, W. R. & Poulos, T. L. (1995) Biochemistry 34, 4331-4341.
57. Pelletier, H. & Kraut, J. (1992) Science 258, 1748-1755.
58. Petersen, J. F. W., Kadziola, A. & Larsen, S. (1994) FEBS Lett. 339, 291-296.
59. Peters, K. P., Fauck, J. & Frömmel, C. J. (1996) Mol. Biol. 256, 201-213.
60. Poulos, T. L. (1993) Curr. Opin. Biotech. 4, 484-489.
61. Poulos, T. L., Edwards, S. L., Wariishi, H. & Gold, M. H. (1993) J. Biol. Chem. 268, 4429-4440.
62. Raag, R., Swanson, B. A., Poulos, T. L. & Ortiz de Montellano, P. R. (1990) Biochemistry 29, 8119-8126.
63. Ringe, D., Petsko, G. A., Kerr, D. E. & Ortiz de Montellano, P. R. (1984) Biochemistry 23, 2-4.
64. Sakurada, J., Takahashi, S. & Hosoya, T. (1986) J. Biol. Chem. 261, 9657-9662.
65. Sali, A. & Blundell, T. L. (1993) J. Mol. Biol. 234, 779-815.
66. Sanders, S. A., Bray, R. C. & Smith, A. T. (1994) Eur. J. Biochem. 224, 1029-1037.
67. Saxena, A., Modi, S., Behere, D. V. & Mitra, S. (1990) Biochim. Biophys. Acta 1041, 83-93.
68. Sass, M. & Ziessow, D. (1977) J. Magn. Reson. 25, 263-276.
69. Schejter, A., Lanir, A. & Epstein, N. (1976) Arch. Biochem. Biophys. 174, 36-44.
70. Schuller, D. J., Ban, N., van Huystee, R. B., McPherson, A. & Poulos, T. L. (1996) Structure (Lond.) 4, 311-321.
71. Smith, A. T., Sanders, S. A., Greschik, H., Thorneley, R. N. F., Burke, J. F. & Bray, R. C. (1992a) Biochem. Soc. Trans. 20, 340.
72. Smith, A. T., Sanders, S. A., Thorneley, R. N. F., Burke, J. F. & Bray, R. C. (1992b) Eur. J. Biochem. 207, 507-519.
73. Smith, A. T., Sanders, S. A., Sampson, C., Bray, R. C., Burke, J. F. & Thorneley, R. N. F. (1993) in Plant peroxidases: biochemistry & physiology (Welinder, K. G., Rasmussen, S. K., Penel, C. T. & Greppin, H., eds) pp. 159-168, University of Geneva, Geneva.
74. Smulevich, G., English, A. M., Mantini, A. R. & Marzocchi, M. P. (1991) Biochemistry 30, 772-779.
75. Solomon, I. & Bloembergen, N. (1956) J. Chem. Phys. 25, 261-266.
76. Sundaramoorthy, M., Gold, M. H. & Poulos, T. L. (1994) J. Biol. Chem. 269, 32759-32767.
77. Teraoka, J. & Kitagawa, T. (1981) J. Biol. Chem. 256, 3969-3977.
78. Traylor, T. G. & Traylor, P. S. (1995) in Active oxygen in biochemistry (Valentine, J. S., Foote, C. S., Greenberg, A. & Liebman, J. F., eds) vol. 34, pp. 84-187 Chapman and Hall, London.
79. Turano, P., Ferrer, J. C., Cheeseman, M. R., Thomson, A. J., Banci, L., Bertini, I. & Mauk, A. G. (1995) Biochemistry 34, 13895-13905.
80. Veitch, N. C. & Williams, R. J. R. (1990) Eur. J. Biochem. 189, 351-362.
81. Veitch, N. C. (1995) Biochem. Soc. Trans. 23, 232-240.
82. Veitch, N. C., Williams, R. J. P., Bone, N. M., Burke, J. F. & Smith, A. T. (1995) Eur. J. Biochem. 233, 650-658.
83. Vitello, L. B., Erman, J. E., Miller, M. A., Mauro, J. M. & Kraut, J. (1992) Biochemistry 31, 11 524-11 535.
84. Vitello, L. B., Erman, J. E., Miller, M. A., Wang, J. & Kraut, J. (1993) Biochemistry 32, 9807.
85. Welinder, K. G. (1992a) Curr. Opin. Struct. Biol. 2, 388-393.
86. Welinder, K. G. (1992b) in Plant peroxidases 1980-1990: topics and detailed literature on molecular, biochemical and physiological aspects (Penel, C., Gaspar, T. & Greppin, H., eds) pp. 1-24, University of Geneva, Geneva.
87. Wilcox, S. K., Jensen, G. M., Fitzgerald, M. M., McRee, D. E. & Goodin, D. B. (1996) Biochemistry 35, 4858-4866.
88. Yonetani, T. & Ray, G. S. (1965) J. Biol. Chem. 240, 4503-4508.
89. Zeng, J. & Fenna, R. E. (1992) J. Mol. Biol. 226, 185-207.
90. Zhao, D., Gilfoyle, D. J., Smith, A. T. & Loew, G. H. (1996) Proteins Struct. Funct. Genet. 26, 204-216.