Proteome analysis of Spiroplasma melliferum (A56) and protein characterisation across species boundaries

Electrophoresis

Volumn 18, Issue 8, 1997, Pages 1335-1346

  Cordwell, Stuart J ^a   Basseal, David J ^a   Humphery Smith, Ian ^a  

^a NONE

Author keywords

Gene product mapping; Mollicutes; Protein analysis; Proteome; Spiroplasma melliferum; Two dimensional polyacrylamide gel electrophoresis

Indexed keywords

AMINO ACID ANALYSIS; AMINO ACID SEQUENCE; CONFERENCE PAPER; DNA SEQUENCE; ENERGY METABOLISM; GENETIC ANALYSIS; MASS SPECTROMETRY; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ANALYSIS; PROTEIN EXPRESSION; SPIROPLASMA;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE EXPRESSION; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PEPTIDE MAPPING; SEQUENCE ANALYSIS; SPECIES SPECIFICITY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPIROPLASMA;

EID: 0030817688     PISSN: 01730835     EISSN: None     Source Type: Journal    
DOI: 10.1002/elps.1150180809     Document Type: Conference Paper

References (93)

1. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J., Tomb, J.-F., Dougherty, B. A., Merrick, J. M., McKenney, K., Sutton, G., FitzHugh, W., Fields, C., Gocayne, J. D., Scott, J., Shirley, R., Liu, L.-I., Glodek, A., Kelley, J. M., Weidman, J. F., Phillips, C. A., Spriggs, T., Hedblom, E., Cotton, M. D., Utterback, T. R., Hanna, M. C., Nguyen, D. T., Saudek, D. M., Brandon, R. C., Fine, L. D., Fritchman, J. L., Fuhrmann, J. L., Geoghagen, N. S. M., Gnehm, C. L., McDonald, L. A., Small, K. V., Fraser, C. M., Smith, H. O., Venter, J. C., Science 1995, 269, 496-512.
2. Fraser, C. M., Gocayne, J. D., White, O., Adams, M. D., Clayton, R. A., Fleischmann, R. D., Bult, C. J., Kerlavage, A. R., Sutton, G., Kelley, J. M., Fritchman, J. L., Weidman, J. F., Small, K. V., Sandusky, M., Fuhrmann, J., Nguyen, D., Utterback, T. R., Saudek, D. M., Phillips, C. A., Merrick, J. M., Tomb, J.-F., Dougherty, B. A., Bott, K. F., Hu, P.-C., Lucier, T. S., Peterson, S. N., Smith, H. O., Hutchison, C. A. III, Venter, J. C., Science 1995 270, 397-403.
3. Bult, C. J., White, O., Olsen, G. J., Zhou, L., Fleischmann, R. D., Sutton, G. G., Blake, J. A., FitzGerald, L. M., Clayton, R. A., Gocayne, J. D., Kerlavage, A. R., Dougherty, B. A., Tomb, J. F., Adams, M. D., Reich, C. I., Overbeek, R., Kirkness, E. F., Weinstock, K. G., Merrick, J. M., Glodek, A., Scott, J. L., Geoghagen, N. S. M., Weidman, J. F., Fuhrmann, J. L., Nguyen, D., Utterback, T. R., Kelley, J. M., Peterson, J. D., Sadow, P. W., Hanna, M. C., Cotton, M. D., Roberts, K. M., Hurst, M. A., Kaine, B. P., Borodovsky, M., Klenk, H. P., Fraser, C. M., Smith, H. O., Woese, C. R., Venter, J. C., Science 1996, 273, 1058-1073.
4. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., Kimura, T., Hosouchi, T., Matsuno, A., Muraki, A., Nakazaki, N., Naruo, K., Okumura, S., Shimpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., Tabata, S., DNA Res. 1996, 3, 109-136.
5. Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., Kimura, T., Hosouchi, T., Matsuno, A., Muraki, A., Nakazaki N., Naruo, K., Okumura, S., Shimpo, S., Takeuchi, C., Wada, T., Watanabe, A., Yamada, M., Yasuda, M., Tabata, S., DNA Res. 1996, 3, 185-209.
6. Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.-C., Herrmann, R., Nucleic Acids Res. 1996, 24, 4420-4449.
7. Goffeau, A., Barrell, B. G., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J. D., Jacq, C., Johnston, M., Louis, E. J., Mewes, H. W., Murakami, Y., Philippsen, P., Tettelin, H., Oliver, S. G., Science 1996, 274, 546-567.
8. http://www.tigr.org/tdb/mdb/mdb.html
9. http://www.mcs.anl.gov/home/gaasterl/genomes.html
10. Liang, P., Pardee, A. B., Science 1992, 257, 967-971.
11. Liang, P., Averboukh, L., Pardee, A. B., Nucleic Acids Res. 1993, 21, 3269-3275.
12. Goffeau, A., Nature 1997, 385, 202-203.
13. Wasinger, V. C., Cordwell, S. J., Cerpa-Poljak, A., Yan, J. X., Gooley, A. A., Wilkins, M. R., Duncan, M. W., Harris, R., Williams, K. L., Humphery-Smith, I., Electrophoresis 1995, 16, 1090-1094.
14. Wilkins, M. R., Pasquali, C., Appel, R. D., Ou, K., Golaz, O., Sanchez, J.-C., Yan, J. X., Gooley, A. A., Hughes, G., Humphery-Smith, I., Williams, K. L., Hochstrasser, D., Bio/Technology 1996, 14, 61-65.
15. Jungblut, P., Dzionara, M., Klose, J., Wittmann-Leibold, B., J. Prot. Chem. 1992, 11, 603-612.
16. Shaw, G., Proc. Natl. Acad. Sci. USA 1993, 90, 5138-5142.
17. Hobohm, U., Houthhaeve, T., Sander, C., Anal. Biochem. 1994, 222, 202-209.
18. Galat, A., Bouet, F., Rivière, S., Electrophoresis 1995, 16, 1095-1103.
19. Golaz, O., Wilkins, M. R., Sanchez, J.-C., Appel, R. D., Hochstrasser, D. F., Williams, K. L., Electrophoresis 1996, 17, 573-579.
20. Maillet, I., Lagniel, G., Perrot, M., Boucherie, H., Labarre, J., J. Biol. Chem. 1996, 271, 10263-10270.
21. Yates, J. R. III, Speicher, S., Griffin, P. R., Hunkapiller, T., Anal. Biochem. 1993, 214, 397-408.
22. Pappin, D. J. C., Højrup, P., Bleasby, A. J., Curr. Biol. 1993, 3, 327-332.
23. Mann, M., Højrup, P., Roepstorff, P., Biol. Mass. Spectrom. 1993, 22, 338-345.
24. Henzel, W. J., Billeci, T. M., Stults, J. T., Wong, S. C., Grimley, C., Watanabe, C., Proc. Natl. Acad. Sci. USA 1993, 90, 5011-5015.
25. James, P., Quadroni, M., Carafoli, E., Gonnet, G., Biochem. Biophys. Res. Comm. 1993, 195, 58-64.
26. Mørtz, E., Vorm, O., Mann, M., Roepstorff, P., Biol. Mass Spectrom. 1994, 23, 249-261.
27. Strupat, K., Karas, M., Hillenkamp, F., Anal. Chem. 1994, 66, 464-470.
28. Vorm, O., Roepstorff, P., Mann, M., Anal. Chem. 1994, 66, 3281-3287.
29. Sutton, C. W., O'Neill, J. A., Cottrell, J. S., Anal. Biochem. 1994, 218, 34-46.
30. Sutton, C. W., Pemberton, K. S., Cottrell, J. S., Corbett, J. M., Wheeler, C. H., Dunn, M. J., Pappin, D. J., Electrophoresis 1995, 16, 308-316.
31. Clauser, K. R., Hall, S. C., Smith, D. M., Webb, J. W., Andrews, L. E., Tran, H. M., Epstein, L. B., Burlingame, A. L., Proc. Natl. Acad. Sci. USA 1995, 92, 5072-5076.
32. Patterson, S. D., Electrophoresis 1995, 16, 1104-1114.
33. Mann, M., Wilm, M., Trends Biochem. Sci. 1995, 20, 219-224.
34. Patterson, S. D., Aebersold, R., Electrophoresis 1995, 16, 1791-1814.
35. Gharahdaghi, F., Kirchner, M., Fernandez, J., Mische, S. M., Anal. Biochem. 1996, 233, 94-99.
36. Quadroni, M., Staudenmann, W., Kertesz, M., James, P., Eur. J. Biochem. 1996, 239, 773-781.
37. Figeys, D., Ducret, A., Yates, J. R. III, Aebersold, R., Nature Biotechnol. 1996, 14, 1579.
38. Vorm, O., Mann, M., J. Amer. Soc. Mass Spectrom. 1994, 5, 955-958.
39. Wilm, M., Shevchenko, A., Houthhaeve, T., Breit, S., Schweigerer, L., Fotsis, T., Mann, M., Nature 1996, 379, 466-469.
40. Shevchenko, A., Jensen, O. N., Podtelejnikov, A. V., Sagliocco, F., Wilm, M., Vorm, O., Mortensen, P., Shevchenko, A., Boucherie, H., Mann, M., Proc. Natl. Acad. Sci. USA 1996, 93, 14440-14445.
41. Thiede, B., Otto, A., Zimny-Arndt, U., Müller, E. C., Jungblut, P., Electrophoresis 1996, 17, 588-599.
42. Vandekerckhove, J., Bauw, G., Puype, M., Van Damme, J., Van Montagu, M., Eur. J. Biochem. 1985, 152, 9-19.
43. Matsudaira, P., J. Biol. Chem. 1987, 262, 10035-10038.
44. Eng, J. K., McCormack, A. L., Yates, J. R. III, J. Amer. Soc. Mass Spectrom. 1994, 5, 976-989.
45. Mann, M., Wilm, M., Anal. Chem. 1994, 66, 4390-4399.
46. Cordwell, S. J., Wilkins, M. R., Cerpa-Poljak, A., Gooley, A. A., Duncan, M., Williams, K. L., Humphery-Smith, I., Electrophoresis 1995, 16, 438-443.
47. Wrigley, C., Nature 1996, 381, 738-739.
48. VanBogelen, R. A., Sankar, P., Clark, R. L., Bogan, J. L., Neidhardt, F. C., Electrophoresis 1992, 13, 1014-1054.
49. Pasquali, C., Frutiger, S., Wilkins, M. R., Hughes, G. J., Appel, R. D., Bairoch, A., Schaller, D., Sanchez, J.-C., Hochstrasser, D. F., Electrophoresis 1996, 17, 547-555.
50. Garrels, J. I., Futcher, B., Kobayashi, R., Latter, G. I., Schwender, B., Volpe, T., Warner, J. R., McLaughlin, C. S., Electrophoresis 1994, 15, 1466-1486.
51. Neidhardt, F. C., VanBogelen, R. A., in: Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M., Umbarger, H. E. (Eds.), Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, American Society for Microbiology, Washington, DC 1987, pp. 1334-1345.
52. VanBogelen, R. A., Olsen, E. R., Wanner, B. L., Neidhardt, F. C., J. Bacteriol. 1996, 178, 4344-4366.
53. Völker, U., Engelmann, S., Maul, B., Riethdorf, S., Völker, A., Schmid, R., Mach, H., Hecker, M., Microbiology 1994, 140, 741-752.
54. Norris, S. J., Microbiol. Revs. 1993, 57, 750-779.
55. Giometti, C. S., Tollaksen, S. L., Mukund, S., Zhou, Z. H., Ma, K. R., Mai, X. H., Adams, M. W. W., J. Chromatogr. 1995, 698, 341-349.
56. Flahaut, S., Hartke, A., Giard, J.-C., Benachour, A., Boutibonnes, P., Auffray, Y., FEMS Microbiol. Lett. 1996, 138, 49-54.
57. Spectro, M. P., Aliabadi, Z., Gonzalez, T., Foster, J. W., J. Bacteriol. 1986, 168, 420-424.
58. Nyström, T., Olsson, R. M., Kjelleberg, S., Appl. Environ. Micro. 1992, 58, 55-65.
59. Paludanmuller, C., Weichart, D., Mcdougald, D., Kjelleberg, S., Microbiology 1996, 142, 1675-1684.
60. Norbeck, J., Blomberg, A., FEMS Microbiol. Lett. 1996, 137, 1-8.
61. Wheeler, C. H., Berry, S. L., Wilkins, M. R., Corbett, J. M., Ou, K., Gooley, A. A., Humphery-Smith, I., Williams, K. L., Dunn, M. J., Electrophoresis 1996, 17, 580-587.
62. Wise, M. J., Littlejohn, T., Humphery-Smith, I., Electrophoresis 1997, 18, 1399-1409.
63. Cordwell, S. J., Humphery-Smith, I., Electrophoresis 1997, 18, 1410-1417.
64. Carle, P., Laigret, F., Tully, J. G., Bové, J. M., Int. J. Syst. Bacteriol. 1995, 45, 178-181.
65. Clark, T. B., Whitcomb, R. F., Tully, J. G., Mouches, C., Saillard, C., Bové, J. M., Wroblewski, H., Carle, P., Rose, D. L., Henegar, R. B., Williamson, D. L., Int. J. Syst. Bacteriol. 1985, 35, 296-308.
66. Chastel, C., LeGoff, F., Humphery-Smith, I., Res. Microbiol. 1991, 142, 411-417.
67. Humphery-Smith, I., Chastel, C., LeGoff, F., Med. J. Aust. 1992, 156, 142.
68. Mouches, C., Vignault, J. C., Tully, J. G., Whitcomb, R. F., Bové, J. M., Curr. Microbiol. 1979, 2, 69-74.
69. Mouches, C., Menara, A., Tully, J. G., Bové, J. M., Rev. Infect. Dis. 1982, 4, S141-S147.
70. Humphery-Smith, I., Guyonnet, F., Chastel, C., Electrophoresis 1994, 15, 1212-1217.
71. Leibovitz, A., Am. J. Hyg. 1963, 78, 173-178.
72. Humphery-Smith, I., Chastel, C., Grulet, O., LeGoff, F., Zbl. Bakt. 1990, Suppl. 20, 922-924.
73. Bairoch, A., Nucleic Acids Res. 1993, 21, 3097-3103.
74. Cordwell, S. J., Wasinger, V. C., Cerpa-Poljak, A., Duncan, M. W., Humphery-Smith, I., J. Mass Spectrom. 1997, 32, 370-378.
75. King, K. W., Woodard, A., Dybvig, K., Gene 1994, 139, 111-115.
76. Marais, A., Bové, J. M., Renaudin, J., J. Bacteriol. 1996, 178, 862-870.
77. Marais, A., Bové, J. M., Renaudin, J., J. Bacteriol. 1996, 178, 7003-7009.
78. Davis, E. O., Jenner, P. J., Brooks, P. C., Colston, M. J., Sedgwick, S. G., Cell 1992, 71, 201-210.
79. Colston, M. J., Davis, E. O., Mol. Microbiol. 1994, 12, 359-363.
80. Himmelreich, R., Plagens, H., Hilbert, H., Reiner, B., Herrmann, R., Nucleic Acids Res. 1997, 25, 701-712.
81. Guptasarma, P., BioEssays 1995, 17, 987-997.
82. Humphery-Smith, I., Blackstock, W. P., J. Prot. Chem. 1997, in press.
83. Wasinger, V. C., Bjellqvist, B., Humphery-Smith, I., Electrophoresis 1997, 18, 1373-1383.
84. Cordwell, S. J., Basseal, D. J., Shaw, D. C., Bjellqvist, B., Humphery-Smith, I., Electrophoresis 1997, 18, 1393-1398.
85. Cordwell, S. J., Basseal, D. J., Pollack, J. D., Humphery-Smith, I., Gene, in press.
86. Wroblewski, H., Johannson, K.-E., Hjertén, S., Biochim. Biophys. Acta 1977, 465, 275-289.
87. Williamson, D. L., Renaudin, J., Bové, J. M., J. Bacteriol. 1991, 173, 4353-4362.
88. Zhu, P.-P., Reizer, J., Reizer, A., Peterkofsky, A., J. Biol. Chem. 1993, 268, 26531-26540.
89. Pollack, J. D., McElwain, M. C., DeSantis, D., Manolukas, J. T., Tully, J. G., Chang, C.-J., Whitcomb, R. F., Hackett, K. J., Williams, M. V., Int. J. Syst. Bacteriol. 1989, 39, 406-412.
90. Manolukas, J. T., Barile, M. F., Chandler, D. K. F., Pollack, J. D., J. Gen. Microbiol. 1988, 134, 791-800.
91. Pollack, J. D., Williams, M. V., Banzon, J., Jones, M. A., Harvey, L., Tully, J. G., Int. J. Syst. Bacteriol. 1996, 46, 885-890.
92. Shirazi, I., Tarshis, M., Rottem, S., Microbiology 1995, 141, 2323-2328.
93. Hackett, K. J., Clark, E. A., Whitcomb, R. F., Camp, M., Tully, J. G., Int. J. Syst. Bacteriol. 1996, 46, 912-915.