Analysis of proteins by mass spectrometry

Modern Protein Chemistry: Practical Aspects

Volumn , Issue , 2001, Pages 71-102

  Bier, Mark E ^a  

^a CARNEGIE MELLON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0011302611     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (75)

1. Barber, M., Bordoli, R. S., Garner, G. V., Gordon, D. B., Sedgwick, R. D., Tetler, L. W., and Tyler, A. N., Biochem. J., 1981, 197, 401–404.
2. Barber, M., Bordoli, R. S., Sedgwick, R. D., and Tyler, A. N., Nature, 1981, 293, 270–275.
3. Schulten, H. R., Int. J. Mass Spectrom. Ion Phys., 1979, 32, 97–283.
4. MacFarlane, R. D. and Torgerson, D. F., Science, 1976, 191, 920–923.
5. Aleksandrov, M. L., Gall, L. N., Krasnow, V. N., Nikolaev, V. I., Palenko, V. A., Shkurov, V. A., Baram, G. I., Gracher, M. A., Knorre, V. D., and Kusner, Y. S., Bioorg. Khim., 1984, 10, 710.
6. Meng, C. K., Mann, M., and Fenn, J. B., Z. Phys. D., 1988, 2, 95.
7. Fenn, J. B., Mann, M., Meng, C. K., and Wong, S. F., Mass Spectrom. Rev., 1990, 9, 37.
8. Covey, T. R., Bonner, R. F., and Shushan, B. I., Rapid Comm. Mass Spec., 1988, 2, 249–256.
9. Fenn, J. B., Mann, M., Meng, C. K., Wong, S. F., and Whitehouse, C. M., Science, 1989, 246, 64–71.
10. Karas, M. and Hillenkamp, F., Anal. Chem., 1988, 60, 299–2301.
11. Karas, M., Bachmann, D., Bahr, U., and Hillenkamp, F., Int. J. Mass Spectrom. Ion Process., 1987, 78, 53–68.
12. Karas, M., Bahr, U., and Hillenkamp, F., Int. J. Mass Spectrom. Ion Proces., 1989, 92, 231–242.
13. Dole, M., Mach, L. L., Hines, R. L., Mobley, R. C., Ferguson, L. D., and Alice, M. B. J., Chem. Phys., 1968, 49, 2240.
14. Clegg, G. A. and Dole, M., Biopolymers, 1971, 10, 821–826.
15. Dole, M., Cox, H. L., and Gieniec, J., Advances in Chemistry Series, 1973, No. 125, Polymer Molecular Weight Methods, Mason, E. A., Ed., Electrospray Mass Spectroscopy, 1973, chap. 7, 73.
16. Gieniec, J., Mack, L. L., Nakamae, K., Gupta, C., Kumar, V., and Dole, M., Biomed. Mass Spectrom., 1984, 11, 259–268.
17. Fenn, J. B., Mann, M., Meng, C. K., and Wong, S. F., Mass Spectrom. Rev., 1990, 9, 37.
18. Aleksandrov, M. L., Gall, L. N., Krasnow, V. N., Nikolaev, V. I., Palenko, V. A., Shkurov, V. A., Baram, G. I., Gracher, M. A., Knorre, V. D., and Kusner, Y. S., Bioorg. Khim., 1984, 10, 710.
19. Meng, C. K., Mann, M., and Fenn, J. B., Z. Phys. D., 1988, 2, 95.
20. Dohmeier, D. M. and Jorgenson, J. W., Microelectrospray Method and Apparatus, U.S. Patent 5, 115, 131, 1992.
21. Lewis, K. C., Dohmeier, D. M., Jorgenson, J. W., Kaufmann, S. L., Zarrin, F., and Dorman, F. D., Anal. Chem., 1994, 66, 2285–2292.
22. Wilm, M. S. and Mann, M., Int. J. of Mass Spectrom. Ion Proces., 1994, 136, 167–180.
23. Wilm, M. and Mann, M., Anal. Chem., 1996, 66, 1–8.
24. Hillenkamp, F., Karas M., and Giessmann, U., Process and Device for the Laser Desorption of Analyte Molecular Ions, Especially of Biomolecules, U.S. Patent 5, 118, 937, 1992.
25. Yates, J., Rapid Commun. Mass Spectrom., 1993, 7(1), 20–26.
26. Schwartz, J. C. and Bier, M.E., Rapid Commun. Mass Spectrom., 1993, 7(1), 27–32.
27. Personal communication, Dr. Alan Schoen and Dr. Hans Schweingruber, Ther-moFinnigan Corporation, San Jose, CA, 2001.
28. March, R. E. and Hughes, R. J., Eds., Chemical Analysis, Vol. 102, Quadrupole Storage Mass Spectrometry, Wiley Interscience, New York, 1989, 471.
29. Bier, M. E. and Schwartz, J. C., Electrospray ionization quadrupole ion trap mass spectrometry, in Electrospray Ionization Mass Spectrometry: Fundamentals, Instrumentation, and Applications, Cole, R. Ed., John Wiley & Sons, New York, 1997, chap 7.
30. Henry, K. D., Williams, E. R., Wang, B. H., McLafferty, F. W. Shabanowitz, J., and Hunt, D. F., Proc. Natl. Acad. Sci. U.S.A., 1989, 86, 9075–9078.
31. Martin, S. E., Shabanowitz, J., Hunt, D. F., and Marto, J. A., Anal. Chem., 2000, 72(18), 4266–4274.
32. ZIPTIPS−, Millipore Corp., Suprotip−, The Nest Group, Inc., Southborough, MA, and AMICON, Inc., Beverly, MA.
33. Figeys, D. and Aebersold, R., Electrophoresis, 1998, 19, 885–892.
34. Figeys, D., Ducret, A., Yates, J. R., and Aebersold, R., Natl. Biotech., 1996, 14, 1579–1583.
35. Roepstorff, P. and Fohlman, J. Biomed. Mass Spetrom., 1984, 11(11), 601.
36. Martin, S. E., Shabanowitz, J., Hunt, D. F., and Marto, J. A., Anal. Chem., 2000, 72, 4266–4274.
37. Chait, B. T., Wang, R., Beavis, R. C., and Kent, S. B., Science, 1993, 262, 89–92.
38. Wang, R., Chait, B. T., and Kent S. B. H., Techniques in Protein Chemistry, Vol. V, Crabb, F. W., Ed., Academic, San Diego, CA, 1994, 19–26.
39. Patterson, D. H., Tarr, G. E., Regnier, F. E., and Martin, S. A., Anal. Chem., 1995, 67, 3971–3978.
40. Bonetto, V., Bergman, A. C, Jornvall, H., and Sillard, R., Anal. Chem., 1997, 69, 1315–1319.
41. Yates, J. R., Electrophoresis, 1998, 19, 893–900.
42. Haynes, P. A., Fripp, N., and Aebersold, R., Electrophoresis, 1998, 19, 939–945.
43. Stone, K. L., DeAngelis, R., LoPresti, M., Jones, J., and Papov, V. V., Electrophoresis, 1998, 19, 1046.
44. The University of California, San Francisco.
45. European Molecular Biology Laboratory, Meyerhofstr. 1, 69117 Heidelberg, Germany.
46. SEQUEST−, Eng, J. and Yates, J., Department of Cell Biology, SR11, Scripps Research Institute, La Jolla, CA.
47. Bier, M. E. Department of Chemistry, Carnegie Mellon University and Grabowski, J., Department of Chemistry, University of Pittsburgh, personal communication.
48. Chalmers, M. J. and Gaskel, S. J., Curr. Opin. Biotechnol, 2000, 11(4), 384–390.
49. European Molecular Biology Laboratory, Meyerhofstr. 1, 69117 Heidelberg, Germany.
50. Mann, M. and Wilm, M., Anal. Chem., 1994, 66, 4390–4399.
51. Eng, J. K., McCormack, A. L., and Yates, J. R., J. Am. Soc. Mass Spectrom., 1994, 5, 976–989.
52. Yates, J. R., Eng, J. K., McCormack, A. L., and Schieltz, D., Anal. Chem., 1995, 67, 1426–1436.
53. Yates, J. R., J. Mass Spectrom., 1998, 33, 1–19.
54. Stahl, D. C., Martino, P. A., Swiderek, K. M., Davis, M. T., and Lee T. D., Proc. 40th ASMS Conf. Mass Spectrom. Allied Topics, Washington, D.C., 1992, 1801–1802.
55. Mylchreest, I., Campbell, C., Wheeler, K., and Wakefield, M., Proc. 43rd Conf. Mass Spectrom. Allied Topics, Atlanta, GA, 1995, 436.
56. Arnott, D., King, K., Bier, M., Land A., and Stults, J., Proc. 43rd ASMS Conf. Mass Spectrom. Allied Topics, Atlanta, GA, 1995, 31.
57. Yates, J. R., Eng, J., Schieltz, D., and Link, A., Proc. 43rd Conf. Mass Spectrom. Allied Topics, Atlanta, GA, 1995, 325.
58. Gillece-Castro, B. L., Arnott, D. P., Bier, M. E., Land, A. P., and Stults, J. T., Proc. 43rd Conf. Mass Spectrom. Allied Topics, Atlanta, GA, 1995, 302.
59. Cao, P. and Stults, J. T., J. Chromatogr. A, 1999, 853(1–2), 225–235.
60. Cao, P. and Stults, J. T., Rapid Commun. Mass Spectrom., 2000, 14(17), 1600–1606.
61. Sogaard, M., Anderson, J. S., Roepstorff, P., and Svensson, P., Biotechnology, 1993, 11, 1162–1165.
62. Lapolla, A., Fedele, D., Plebani, M., Garbeglio, M., Seraglia, R., D’Alpaos, M., Arico, C. N., and Traldi, P., Rapid Comm. Mass Spectrom., 1999, 13, 8–14.
63. Settineri, C. A. and Burlingame, A. L., J. Chromatogr. Libr., 1995, 58, 447–514.
64. Zhang, Z. and Smith, D. L., Protein Sci., 1993, 2, 522–531.
65. Deng, Y. and Smith, D. L., J. Mol. Biol., 1999, 294(1), 247–258.
66. Deng, Y. and Smith, D. L., Anal. Biochem., 1999, 276(2), 150–160.
67. Feng, R. and Konishi, Y., J. Am. Soc. Mass Spectrom., 1993, 4, 638–645.
68. Konermann, L., Rosell, F. I., Mauk, A. G., and Douglas, D. J., Biochemistry, 1997, 36, (21), 6448–6454.
69. Lee, V. W. S., Chen, Y.-L., and Konermann, L., Anal. Chem., 1999, 71(19), 4154–4159.
70. Jimenez, C. R., van Veelen, P. A., Li, K. W., Wildering, W. C., Geraerts, W. P. M., Tjaden, U. R., and van der Greef, J., J. Neurochem., 1994, 62(1), 404–407.
71. Huff, T., Muller, C. S. G., and Hannappel, E., FEBS Lett., 1997, 414, 39–44.
72. Chaurand, P., Stoeckli, M., and Caprioli, R. M., Anal. Chem., 1999, 71(23), 5263–5270.
73. Jimenez, C. R., Li, K. W., Dreisewerd, K., Spijker, S., Kingston, R., Bateman, R. H., Burlingame, A. L., Smit, A. B., van Minnen, J., and Geraerts, W. P. M., Biochemistry, 1998, 37(7), 2070–2076.
74. Koomen, J. M., Stoeckli, M., and Caprioli, R. M., J. Mass Spectrom., 2000, 35(2), 258–264.
75. Caprioli, R., Chaurand, P., Stoeckli, M., Norris, J. L., and Baxter, S. A., 48th Conf. Mass Spectrom. Allied Topics, Long Beach, CA, 2000.