Crystal structure of a FYVE-type zinc finger domain from the caspase regulator CARP2

Structure

Volumn 12, Issue 12, 2004, Pages 2257-2263

  Tibbetts, Michael D ^a   Shiozaki, Eric N ^a   Gu, Lichuan ^a   McDonald III, E Robert ^b   El Deiry, Wafik S ^b   Shi, Yigong ^a  

^a PRINCETON UNIVERSITY   (United States)

^b HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CASPASE ASSOCIATED RING PROTEIN 2; INOSITOL PHOSPHATE; PROTEIN; PROTEIN SUBUNIT; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

AMINO TERMINAL SEQUENCE; ARTICLE; CONTROLLED STUDY; CRYSTAL STRUCTURE; LIPID BILAYER; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN FUNCTION; STRUCTURE ANALYSIS;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CARRIER PROTEINS; CELL MEMBRANE; CRYSTALLIZATION; HUMANS; LIGANDS; MICE; MOLECULAR SEQUENCE DATA; PHOSPHATIDYLINOSITOLS; PROTEIN STRUCTURE, TERTIARY; ZINC FINGERS;

INSERTION SEQUENCES;

EID: 9944251920     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2004.10.007     Document Type: Article

References (38)

1. Allison T.J., Wood T.C., Briercheck D.M., Rastinejad F., Richardson J.P., Rule G.S. Crystal structure of the RNA-binding domain from transcription termination factor rho. Nat. Struct. Biol. 5:1998;352-356
2. Aravind L., Koonin E.V. Sap. a putative dna-binding motif involved in chromosomal organization Trends Biochem. Sci. 25:2000;112-114
3. Boldin M.P., Goncharov T.M., Goltsev Y.V., Wallach D.I. Involvement of MACH, a novel MORT1/FADD-interacting protease, in Fas/Apo-1 and TNF receptor-induced cell death. Cell. 85:1996;803-815
4. Brunger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kunstleve R.W., Jiang J.S., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography and NMR system. A new software suite for macromolecular structure determination Acta Crystallogr. D Biol. Crystallogr. 54:1998;905-921
5. Burd C.G., Emr S.D. Phosphatidylinositol(3)-phosphate signaling mediated by specific binding to RING FYVE domains. Mol. Cell. 2:1998;157-162
6. DeLano W.L. The PyMOL Molecular Graphics System. 2002;DeLano Scientific, San Carlos, CA
7. Deveraux Q.L., Reed J.C. IAP family proteins - suppressors of apoptosis. Genes Dev. 13:1999;239-252
8. Dumas J.J., Merithew E., Sudharshan E., Rajamani D., Hayes S., Lawe D., Corvera S., Lambright D.G. Multivalent endosome targeting by homodimeric EEA1. Mol. Cell. 8:2001;947-958
9. Fernandes-Alnemri T., Armstrong R.C., Krebs J., Srinivasula S.M., Wang L., Bullrich F., Fritz L.C., Trapani J.A., Tomaselli K.J., Litwack G., Alnemri E.S. In vitro activation of CPP32 and Mch3 by Mch4, a novel human apoptotic cysteine protease containing two FADD-like domains. Proc. Natl. Acad. Sci. USA. 93:1996;7464-7469
10. Gaullier J.M., Simonsen A., D'Arrigo A., Bremnes B., Stenmark H., Aasland R. FYVE fingers bind PtdIns(3)P. Nature. 394:1998;432-433
11. Gaullier J.M., Ronning E., Gillooly D.J., Stenmark H. Interaction of the EEA1 FYVE finger with phosphatidylinositol 3-phosphate and early endosomes. Role of conserved residues. J. Biol. Chem. 275:2000;24595-24600
12. Holm L., Sander C. Dali. a network tool for protein structure comparison Trends Biochem. Sci. 20:1995;478-480
13. Kraulis P.J. Molscript. a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24:1991;946-950
14. Kutateladze T., Overduin M. Structural mechanism of endosome docking by the FYVE domain. Science. 291:2001;1793-1796
15. Kutateladze T.G., Capelluto D.G., Ferguson C.G., Cheever M.L., Kutateladze A.G., Prestwich G.D., Overduin M. Multivalent mechanism of membrane insertion by the FYVE domain. J. Biol. Chem. 279:2004;3050-3057
16. Mao Y., Nickitenko A., Duan X., Lloyd T.E., Wu M.N., Bellen H., Quiocho F.A. Crystal structure of the VHS and FYVE tandem domains of Hrs, a protein involved in membrane trafficking and signal transduction. Cell. 100:2000;447-456
17. McDonald E.R., El-Deiry W.S. Suppression of caspase-8 and -10 associated RING proteins results in sensitization to death ligands and inhibition of tumor cell growth. Proc. Natl. Acad. Sci. USA. 101:2004;6170-6175
18. Misra S., Hurley J.H. Crystal structure of a phosphatidylinositol 3-phosphate-specific membrane-targeting motif, the FYVE domain of Vps27p. Cell. 97:1999;657-666
19. Nicholls A., Sharp K.A., Honig B. Protein folding and association. insights from the interfacial and thermodynamic properties of hydrocarbons Proteins. 11:1991;281-296
20. Ostermeier C., Brunger A.T. Structural basis of Rab effector specificity. crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A Cell. 96:1999;363-374
21. Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276:1997;307-326
22. Patki V., Lawe D.C., Corvera S., Virbasius J.V., Chawla A. A functional PtdIns(3)P-binding motif. Nature. 394:1998;433-434
23. Rodriguez A.C., Stock D. Crystal structure of reverse gyrase. insights into the positive supercoiling of DNA EMBO J. 21:2002;418-426
24. Sankaran V.G., Klein D.E., Sachdeva M.M., Lemmon M.A. High-affinity binding of a FYVE domain to phosphatidylinositol 3-phosphate requires intact phospholipid but not FYVE domain oligomerization. Biochemistry. 40:2001;8581-8587
25. Shi Y. Mechanisms of caspase inhibition and activation during apoptosis. Mol. Cell. 9:2002;459-470
26. Shiozaki E.N., Chai J., Rigotti D.J., Riedl S.J., Li P., Srinivasula S.M., Alnemri E.S., Fairman R., Shi Y. Mechanism of XIAP-mediated inhibition of caspase-9. Mol. Cell. 11:2003;519-527
27. Simonsen A., Lippe R., Christoforidis S., Gaullier J.M., Brech A., Callaghan J., Toh B.H., Murphy C., Zerial M., Stenmark H. EEA1 links PI(3)K function to Rab5 regulation of endosome fusion. Nature. 394:1998;494-498
28. Stahelin R.V., Long F., Diraviyam K., Bruzik K.S., Murray D., Cho W. Phosphatidylinositol 3-phosphate induces the membrane penetration of the FYVE domains of Vps27p and Hrs. J. Biol. Chem. 277:2002;26379-26388
29. Stahl B., Chou J.H., Li C., Sudhof T.C., Jahn R. Rab3 reversibly recruits rabphilin to synaptic vesicles by a mechanism analogous to raf recruitment by ras. EMBO J. 15:1996;1799-1809
30. Stenmark H., Aasland R. FYVE-finger proteins. effectors of an inositol lipid J. Cell Sci. 112:1999;4175-4183
31. Stenmark H., Aasland R., Toh B.H., D'Arrigo A. Endosomal localization of the autoantigen EEA1 is mediated by a zinc-binding FYVE finger. J. Biol. Chem. 271:1996;24048-24054
32. Terwilliger T.C. MAD phasing. treatment of dispersive differences as isomorphous replacement data Acta Crystallogr. 50:1994;17-23. a
33. A Acta Crystallogr. 50:1994;11-16. b
34. Terwilliger T.C., Berendzen J. Correlated phasing of multiple isomorphous replacement data. Acta Crystallogr. 52:1996;749-757
35. Tibbetts M.D., Zheng L., Lenardo M.J. The death effector domain protein family. regulators of cellular homeostasis Nat. Immunol. 4:2003;404-409
36. Walker J.R., Corpina R.A., Goldberg J. Structure of the Ku heterodimer bound to DNA and its implications for double-strand break repair. Nature. 412:2001;607-614
37. Xu R.X., Pawelczyk T., Xia T.H., Brown S.C. NMR structure of a protein kinase C-gamma phorbol-binding domain and study of protein-lipid micelle interactions. Biochemistry. 36:1997;10709-10717
38. Zhang G., Kazanietz M.G., Blumberg P.M., Hurley J.H. Crystal structure of the cys2 activator-binding domain of protein kinase C delta in complex with phorbol ester. Cell. 81:1995;917-924