메뉴 건너뛰기




Volumn 14, Issue 4, 2004, Pages 985-1003

Significance analysis of ROC indices for comparing diagnostic markers: Applications to gene microarray data

Author keywords

Colon tumor dataset; False discovery rate (FDR); Familywise error rate (FWE); Number of true null hypotheses; Receiver operating characteristic curve

Indexed keywords

BIOLOGICAL MARKER; DNA;

EID: 9244231792     PISSN: 10543406     EISSN: None     Source Type: Journal    
DOI: 10.1081/BIP-200035475     Document Type: Review
Times cited : (11)

References (28)
  • 1
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Alon, U., Barkai, N., Notterman, D. A., Gish, K., Ybarra, S., Mack, D., Levine, A. J. (1999). Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc. Natl. Acad. Sci. USA 96:6745-6750.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 2
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise, C., McLachlan, G. J. (2002). Selection bias in gene extraction on the basis of microarray gene-expression data. Proc. Natl. Acad. Sci. USA 99:6562-6566.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., Hochberg, Y. (1995). Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R Statist. Soc. B 57:289-300.
    • (1995) J. R Statist. Soc. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0034370950 scopus 로고    scopus 로고
    • On the adaptive control of the false discovery rate in multiple testing with independent statistics
    • Benjamini, Y., Hochberg, Y. (2000). On the adaptive control of the false discovery rate in multiple testing with independent statistics. J. Educ. Behav. Statist. 25:60-83.
    • (2000) J. Educ. Behav. Statist. , vol.25 , pp. 60-83
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 4444257989 scopus 로고    scopus 로고
    • Multiple-testing strategy for analyzing cDNA array data on gene expression
    • Delongchamp, R. R., Bowyer, J. F., Chen, J. J., Kodell, R. L. (2004). Multiple-testing strategy for analyzing cDNA array data on gene expression. Biometrics 60:774-782.
    • (2004) Biometrics , vol.60 , pp. 774-782
    • Delongchamp, R.R.1    Bowyer, J.F.2    Chen, J.J.3    Kodell, R.L.4
  • 6
    • 0041833610 scopus 로고    scopus 로고
    • Partial AUC estimation and regression
    • Dodd, L. E., Pepe, M. S. (2003). Partial AUC estimation and regression. Biometrics 59:614-623.
    • (2003) Biometrics , vol.59 , pp. 614-623
    • Dodd, L.E.1    Pepe, M.S.2
  • 8
    • 0033636139 scopus 로고    scopus 로고
    • Support vector machine classification and validation of cancer tissue samples using microarray expression data
    • Furey, T. S., Duffy, N., Cristianini, N., Bednarski, D., Schummer, M., Haussler, D. (2000). Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinformatics 16:906-914.
    • (2000) Bioinformatics , vol.16 , pp. 906-914
    • Furey, T.S.1    Duffy, N.2    Cristianini, N.3    Bednarski, D.4    Schummer, M.5    Haussler, D.6
  • 9
    • 0041530047 scopus 로고    scopus 로고
    • Resampling-based multiple testing for microarray data analysis
    • Ge, Y., Dudoit, S., Speed, T. P. (2003). Resampling-based multiple testing for microarray data analysis. TEST 12:1-44.
    • (2003) TEST , vol.12 , pp. 1-44
    • Ge, Y.1    Dudoit, S.2    Speed, T.P.3
  • 11
    • 0039077714 scopus 로고
    • Some implications of an alternative definition of multiple comparison problem
    • Halperin, M., Lan, K. K. G., Hamdy, M. (1988). Some implications of an alternative definition of multiple comparison problem. Biometrika 75:773-778.
    • (1988) Biometrika , vol.75 , pp. 773-778
    • Halperin, M.1    Lan, K.K.G.2    Hamdy, M.3
  • 14
    • 0141924402 scopus 로고    scopus 로고
    • Comparison of methods for estimating number of true null hypothesis in multiplicity testing
    • Hsueh, H., Chen, J. J., Kodell, R. L. (2003). Comparison of methods for estimating number of true null hypothesis in multiplicity testing. J. Biopharmaceutical Statist. 13:675-689.
    • (2003) J. Biopharmaceutical Statist. , vol.13 , pp. 675-689
    • Hsueh, H.1    Chen, J.J.2    Kodell, R.L.3
  • 15
    • 0027241306 scopus 로고
    • How well do prediction equations predict? Using receiver operating characteristic curves and accuracy curves to compare validity and generalizability
    • Katz, D., Foxman, B. (1993). How well do prediction equations predict? Using receiver operating characteristic curves and accuracy curves to compare validity and generalizability. Epidemiology 4:319-326.
    • (1993) Epidemiology , vol.4 , pp. 319-326
    • Katz, D.1    Foxman, B.2
  • 16
    • 0038021028 scopus 로고    scopus 로고
    • A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns
    • Liu, H., Li, J., Wong, L. (2002). A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns. Genome Inf. 13:51-60.
    • (2002) Genome Inf. , vol.13 , pp. 51-60
    • Liu, H.1    Li, J.2    Wong, L.3
  • 17
    • 0036166439 scopus 로고    scopus 로고
    • Tumor classification by partial least squares using microarray gene expression data
    • Nguyen, D. V., Rocke, D. M. (2002). Tumor classification by partial least squares using microarray gene expression data. Bioinformatics 18:39-50.
    • (2002) Bioinformatics , vol.18 , pp. 39-50
    • Nguyen, D.V.1    Rocke, D.M.2
  • 18
    • 0037368548 scopus 로고    scopus 로고
    • Selecting differentially expressed genes from microarray experiments
    • Pepe, M. S., Longton, G., Anderson, G. L., Schummer, M. (2001). Selecting differentially expressed genes from microarray experiments. Biometrics 59:133-142.
    • (2001) Biometrics , vol.59 , pp. 133-142
    • Pepe, M.S.1    Longton, G.2    Anderson, G.L.3    Schummer, M.4
  • 19
    • 0035375137 scopus 로고    scopus 로고
    • Computational analysis of microarray analysis
    • Quackenbush, J. (2001). Computational analysis of microarray analysis. Nat. Rev. Genet. 2:418-427.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 418-427
    • Quackenbush, J.1
  • 21
    • 0036020892 scopus 로고    scopus 로고
    • A direct approach to false discovery rates
    • Storey, J. D. (2002). A direct approach to false discovery rates. J. R. Statist. Soci. B 64:479-498.
    • (2002) J. R. Statist. Soci. B , vol.64 , pp. 479-498
    • Storey, J.D.1
  • 22
    • 0023890867 scopus 로고
    • Measuring the accuracy of diagnostic systems
    • Swets, J. A. (1988). Measuring the accuracy of diagnostic systems. Science 240:1285-1293.
    • (1988) Science , vol.240 , pp. 1285-1293
    • Swets, J.A.1
  • 24
    • 0024385165 scopus 로고
    • On the statistical analysis of ROC curves
    • Thompson, M. L., Zucchini, W. (1989). On the statistical analysis of ROC curves. Statist. Med. 8:1277-1290.
    • (1989) Statist. Med. , vol.8 , pp. 1277-1290
    • Thompson, M.L.1    Zucchini, W.2
  • 25
    • 0346102887 scopus 로고    scopus 로고
    • Estimation of false discovery rates in multiple testing: Application to gene microarray data
    • Tsai, C. A., Hsueh, H. M., Chen, J. J. (2003). Estimation of false discovery rates in multiple testing: Application to gene microarray data. Biometrics 59:1071-1081.
    • (2003) Biometrics , vol.59 , pp. 1071-1081
    • Tsai, C.A.1    Hsueh, H.M.2    Chen, J.J.3
  • 26
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher, V. G., Tibshirani, R., Chu, G. (2001). Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl. Acad. Sci. USA 98:5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 28
    • 0034117005 scopus 로고    scopus 로고
    • Using the false discovery rate in the genetic dissection of complex traits
    • Letter to Editor
    • Zaykin, D. V., Young, S. S., Westfall, P. H. (2000). Letter to Editor. Using the false discovery rate in the genetic dissection of complex traits. Genetics 154:1917-1918.
    • (2000) Genetics , vol.154 , pp. 1917-1918
    • Zaykin, D.V.1    Young, S.S.2    Westfall, P.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.