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Volumn 3, Issue 4, 2004, Pages 519-526

Identification of microsatellite markers for differentiating some Basmati and non-Basmati rice varieties

Author keywords

Basmati; Genetic diversity; Microsatellite markers; Oryza sativa; SSR; Varietal differentiation

Indexed keywords

ALLELE; ARTICLE; CROSS BREEDING; CULTIVAR; DNA EXTRACTION; GENETIC POLYMORPHISM; GENOTYPE; MICROSATELLITE MARKER; NONHUMAN; PEDIGREE; PLANT GENETICS; RICE; STRAIN DIFFERENCE;

EID: 8744239069     PISSN: 09725849     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (15)

References (35)
  • 2
    • 0013222349 scopus 로고    scopus 로고
    • Basmati rice: A distinct variety (cultivar) of the Indian subcontinent
    • Nene Y L, Basmati rice: A distinct variety (cultivar) of the Indian subcontinent, Asian-Agri-History, 2 (1998) 175-188.
    • (1998) Asian-Agri-History , vol.2 , pp. 175-188
    • Nene, Y.L.1
  • 4
    • 1242271447 scopus 로고    scopus 로고
    • Taxonomy and origin of rice
    • edited by R K Singh et al (Oxford & IBH Pub Co Pvt Ltd, New Delhi, India)
    • Khush G S, Taxonomy and origin of rice, in Aromatic rices, edited by R K Singh et al (Oxford & IBH Pub Co Pvt Ltd, New Delhi, India), 2000, 5-13.
    • (2000) Aromatic Rices , pp. 5-13
    • Khush, G.S.1
  • 5
    • 34250103509 scopus 로고
    • Isozyme and classification of Asian rice varieties
    • Glaszmann J C, Isozyme and classification of Asian rice varieties, Theor Appl Genet, 74 (1987) 21-30.
    • (1987) Theor Appl Genet , vol.74 , pp. 21-30
    • Glaszmann, J.C.1
  • 6
    • 1242293906 scopus 로고    scopus 로고
    • India and the emerging global rice trade
    • edited by R K Singh et al (Oxford & IBH Pub Co Pvt Ltd, New Delhi, India)
    • Bhasin V K, India and the emerging global rice trade, in Aromatic rices, edited by R K Singh et al (Oxford & IBH Pub Co Pvt Ltd, New Delhi, India) 2000, 252-276.
    • (2000) Aromatic Rices , pp. 252-276
    • Bhasin, V.K.1
  • 9
    • 0036943205 scopus 로고    scopus 로고
    • Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP
    • Aggarwal R K, Shenoy V V, Ramadevi J, Rajkumar R & Singh L, Molecular characterization of some Indian Basmati and other elite rice genotypes using fluorescent-AFLP, Theor Appl Genet, 105 (2002) 680-690.
    • (2002) Theor Appl Genet , vol.105 , pp. 680-690
    • Aggarwal, R.K.1    Shenoy, V.V.2    Ramadevi, J.3    Rajkumar, R.4    Singh, L.5
  • 10
    • 0034343182 scopus 로고    scopus 로고
    • Detection of adulteration of Basmati rice with non-premium long grain rice
    • Bligh H F J, Detection of adulteration of Basmati rice with non-premium long grain rice, Int J Food Sci & Technol, 35 (2000) 257-265.
    • (2000) Int J Food Sci & Technol , vol.35 , pp. 257-265
    • Bligh, H.F.J.1
  • 11
    • 0033370236 scopus 로고    scopus 로고
    • Using amplified fragment length polymorphism and simple sequence length polymorphisms to identify cultivars of brown and white milled rice
    • Bligh H F J, Blackhall N W, Edwards K J & McClung A M, Using amplified fragment length polymorphism and simple sequence length polymorphisms to identify cultivars of brown and white milled rice, Crop Sci, 39 (1999) 1715-1721.
    • (1999) Crop Sci , vol.39 , pp. 1715-1721
    • Bligh, H.F.J.1    Blackhall, N.W.2    Edwards, K.J.3    McClung, A.M.4
  • 12
    • 0037197888 scopus 로고    scopus 로고
    • Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers
    • Nagaraju J, Kathirvel M, Ramesh Kumar R, Siddiq E A & Hasnain S E, Genetic analysis of traditional and evolved Basmati and non-Basmati rice varieties by using fluorescence-based ISSR-PCR and SSR markers, Proc Natl Sci Acad USA, 99 (2002) 5836-5841.
    • (2002) Proc Natl Sci Acad USA , vol.99 , pp. 5836-5841
    • Nagaraju, J.1    Kathirvel, M.2    Ramesh Kumar, R.3    Siddiq, E.A.4    Hasnain, S.E.5
  • 13
    • 0031239614 scopus 로고    scopus 로고
    • Microsatellite marker development, mapping and application in rice genetics and breeding
    • McCouch S R, Chen X, Panaud O, Temnykh S, Xu Y et al, Microsatellite marker development, mapping and application in rice genetics and breeding, Plant Mol Biol, 35 (1997) 89-99.
    • (1997) Plant Mol Biol , vol.35 , pp. 89-99
    • McCouch, S.R.1    Chen, X.2    Panaud, O.3    Temnykh, S.4    Xu, Y.5
  • 14
    • 1242316414 scopus 로고    scopus 로고
    • Microsatellite markers in rice: Abundance, diversity, and applications
    • IRRI, Los Banos, Philippines, edited by G S Khush et al (Science Publishers, Inc, New Delhi, India)
    • McCouch S R, Temnykh S, Lukashova A, Coburn J, DeClerck G et al, Microsatellite markers in rice: Abundance, diversity, and applications, in Rice genetics IV. IRRI, Los Banos, Philippines, edited by G S Khush et al (Science Publishers, Inc, New Delhi, India) 2001, 117-135.
    • (2001) Rice Genetics IV , pp. 117-135
    • McCouch, S.R.1    Temnykh, S.2    Lukashova, A.3    Coburn, J.4    DeClerck, G.5
  • 15
    • 0034006872 scopus 로고    scopus 로고
    • Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.)
    • Temnykh S, Park W D, Ayres N, Cartinhour S, Hauck N et al, Mapping and genome organization of microsatellite sequences in rice (Oryza sativa L.), Theor Appl Genet, 100 (2000) 697-712.
    • (2000) Theor Appl Genet , vol.100 , pp. 697-712
    • Temnykh, S.1    Park, W.D.2    Ayres, N.3    Cartinhour, S.4    Hauck, N.5
  • 16
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S R et al, Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential, Genome Res, 11 (2001) 1441-1452.
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3    Lipovich, L.4    Cartinhour, S.5    McCouch, S.R.6
  • 17
    • 5344227605 scopus 로고    scopus 로고
    • Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers
    • In press
    • Jain S, Jain R K & McCouch S R, Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers. Theor Appl Genet (In press).
    • Theor Appl Genet
    • Jain, S.1    Jain, R.K.2    McCouch, S.R.3
  • 18
    • 0040865518 scopus 로고    scopus 로고
    • Identification of domestic rice cultivars by RAPD method using milled rice grains as samples
    • Ohtsubo K, Fujii T, Hashino Y, Toyshima H, Okadome H et al, Identification of domestic rice cultivars by RAPD method using milled rice grains as samples, J JPN Soc Food Sci Technol, 44 (1997) 386-390.
    • (1997) J JPN Soc Food Sci Technol , vol.44 , pp. 386-390
    • Ohtsubo, K.1    Fujii, T.2    Hashino, Y.3    Toyshima, H.4    Okadome, H.5
  • 19
    • 0021695885 scopus 로고
    • Ribosomal spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics
    • Saghai-Maroof M A, Soliman K M, Jorgensen R A & Allard R W, Ribosomal spacer length polymorphism in barley: Mendelian inheritance, chromosomal location and population dynamics, Proc Natl Acad Sci USA, 81 (1984) 8014-8019.
    • (1984) Proc Natl Acad Sci USA , vol.81 , pp. 8014-8019
    • Saghai-Maroof, M.A.1    Soliman, K.M.2    Jorgensen, R.A.3    Allard, R.W.4
  • 20
    • 0020858877 scopus 로고
    • Molecular identification of the waxy locus in maize
    • Shure M, Wessler S & Federoff N, Molecular identification of the waxy locus in maize, Cell, 35 (1983) 225-233.
    • (1983) Cell , vol.35 , pp. 225-233
    • Shure, M.1    Wessler, S.2    Federoff, N.3
  • 21
    • 51249171888 scopus 로고
    • A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue
    • Tai H T & Tanksley S D, A rapid and inexpensive method for isolation of total DNA from dehydrated plant tissue, Plant Mol Biol Rep, 8 (1990) 297-303.
    • (1990) Plant Mol Biol Rep , vol.8 , pp. 297-303
    • Tai, H.T.1    Tanksley, S.D.2
  • 22
    • 1242271452 scopus 로고    scopus 로고
    • DNA isolation from milled rice samples for PCR-based molecular marker analysis
    • Pal S, Jain S, Saini N & Jain R K, DNA isolation from milled rice samples for PCR-based molecular marker analysis, Rice Genet Newslett, 18 (2001) 94-97.
    • (2001) Rice Genet Newslett , vol.18 , pp. 94-97
    • Pal, S.1    Jain, S.2    Saini, N.3    Jain, R.K.4
  • 24
    • 0030827321 scopus 로고    scopus 로고
    • Development of a microsatellite framework map providing genome wide coverage in rice (Oryza sativa L.)
    • Chen X, Temnykh S, Xu Y, Cho Y G & McCouch S R, Development of a microsatellite framework map providing genome wide coverage in rice (Oryza sativa L.), Theor Appl Genet, 95 (1997) 553-567.
    • (1997) Theor Appl Genet , vol.95 , pp. 553-567
    • Chen, X.1    Temnykh, S.2    Xu, Y.3    Cho, Y.G.4    McCouch, S.R.5
  • 25
    • 15444352074 scopus 로고    scopus 로고
    • Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers
    • Ghosh S, Karanjawala Z E, Hauser E R, Ally D, Knapp J I et al, Methods for precise sizing, automated binning of alleles, and reduction of error rates in large-scale genotyping using fluorescently labeled dinucleotide markers, Genome Res, 7 (1997) 165-178.
    • (1997) Genome Res , vol.7 , pp. 165-178
    • Ghosh, S.1    Karanjawala, Z.E.2    Hauser, E.R.3    Ally, D.4    Knapp, J.I.5
  • 28
    • 0031018376 scopus 로고    scopus 로고
    • Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with microsatellite loci
    • Akagi H Yokozeki Y, Inagaki A & Fujimura T, Highly polymorphic microsatellites of rice consist of AT repeats, and a classification of closely related cultivars with microsatellite loci, Theor Appl Genet, 94 (1997) 61-67.
    • (1997) Theor Appl Genet , vol.94 , pp. 61-67
    • Akagi, H.1    Yokozeki, Y.2    Inagaki, A.3    Fujimura, T.4
  • 29
    • 0034090835 scopus 로고    scopus 로고
    • Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.)
    • Cho Y G, Ishii T, Temnykh S, Chen X, Lipovich L & McCouch S R, Diversity of microsatellites derived from genomic libraries and GenBank sequences in rice (Oryza sativa L.), Theor Appl Genet, 100 (2000) 713-722.
    • (2000) Theor Appl Genet , vol.100 , pp. 713-722
    • Cho, Y.G.1    Ishii, T.2    Temnykh, S.3    Chen, X.4    Lipovich, L.5    McCouch, S.R.6
  • 30
    • 0032765550 scopus 로고    scopus 로고
    • The use of microsatellite polymorphism for the identification of Australian breeding lines of rice (Oryza sativa L.)
    • Garland S H, Lewin L, Abedinia A, Henry R & Blackeney A, The use of microsatellite polymorphism for the identification of Australian breeding lines of rice (Oryza sativa L.), Euphytica, 108 (1999) 53-63.
    • (1999) Euphytica , vol.108 , pp. 53-63
    • Garland, S.H.1    Lewin, L.2    Abedinia, A.3    Henry, R.4    Blackeney, A.5
  • 31
    • 0036302260 scopus 로고    scopus 로고
    • Evaluation of genetic diversity in rice subspecies using microsatellite markers
    • Ni J, Colowit P M & Mackill D J, Evaluation of genetic diversity in rice subspecies using microsatellite markers, Crop Sci, 42 (2002) 601-607.
    • (2002) Crop Sci , vol.42 , pp. 601-607
    • Ni, J.1    Colowit, P.M.2    Mackill, D.J.3
  • 32
    • 0031154020 scopus 로고    scopus 로고
    • Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers
    • Olufowote J O Xu Y, Chen X, Park W O, Beachell H M et al, Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers, Genome, 40 (1997) 370-378.
    • (1997) Genome , vol.40 , pp. 370-378
    • Olufowote, J.O.1    Xu, Y.2    Chen, X.3    Park, W.O.4    Beachell, H.M.5
  • 33
    • 0029954112 scopus 로고    scopus 로고
    • Development of microsatellite markers and characterization of simple sequence length polymorphism (SSR) in rice (Oryza sativa L.)
    • Panaud O, Chen X & McCouch S R, Development of microsatellite markers and characterization of simple sequence length polymorphism (SSR) in rice (Oryza sativa L.), Mol & Gen Genet, 252 (1996) 597-607.
    • (1996) Mol & Gen Genet , vol.252 , pp. 597-607
    • Panaud, O.1    Chen, X.2    McCouch, S.R.3
  • 34
    • 0027519769 scopus 로고
    • Abundance polymorphism, and genetic mapping of microsatellites in rice
    • Wu K S & Tanksley S D, Abundance, polymorphism, and genetic mapping of microsatellites in rice, Mol & Gen Genet, 241 (1993) 225-235.
    • (1993) Mol & Gen Genet , vol.241 , pp. 225-235
    • Wu, K.S.1    Tanksley, S.D.2
  • 35
    • 0036933585 scopus 로고    scopus 로고
    • Fluorescent-labeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativa L.)
    • Blair M W, Hedetale V & McCouch S R, Fluorescent-labeled microsatellite panels useful for detecting allelic diversity in cultivated rice (Oryza sativa L.), Theor Appl Genet, 105 (2002) 449-457.
    • (2002) Theor Appl Genet , vol.105 , pp. 449-457
    • Blair, M.W.1    Hedetale, V.2    McCouch, S.R.3


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