Semi-automated simple sequence repeat analysis reveals narrow genetic base in Indian potato cultivars

Biologia Plantarum

Volumn 48, Issue 4, 2004, Pages 517-522

  Chimote, V P ^a   Chakrabarti, S K ^a   Pattanayak, D ^a   Naik, P S ^a  

^a CENTRAL POTATO RESEARCH INSTITUTE   (India)

Author keywords

genetic relationship; microsatellites; simple sequence repeats polymorphism; Solanum tuberosum

Indexed keywords

EMBRYOPHYTA; OROGENIA; SOLANUM; SOLANUM TUBEROSUM;

EID: 8544226993     PISSN: 00063134     EISSN: None     Source Type: Journal    
DOI: 10.1023/B:BIOP.0000047146.69936.ed     Document Type: Article

References (25)

1. Banerjee, H., Pai, R.A., Sharma, R.P.: Restriction fragment length polymorphism and random amplified polymorphic DNA analysis of chickpea accessions. - Biol. Plant. 42: 197-208, 1999.
2. Chakrabarti, S.K., Pattanayak, D., Naik, P.S.: Fingerprinting Indian potato cultivars by random amplified polymorphic DNA (RAPD) markers. - Potato Res. 44: 375-387, 2001.
3. Cordeiro, G.M., Taylor, G.O., Henry, R.J.: Characterization of microsatellite markers from sugarcane (Saccharum sp.), a highly polyploid species. - Plant Sci. 155: 161-168, 2000.
4. Doyle, J.J., Doyle, J.L.: A rapid DNA isolation procedure for small quantities of fresh leaf tissue. - Phytochem. Bull. 19: 11-15, 1987.
5. Jones, C.J., Edwards, K.J., Castoglione, S., Winfield, M.O., Sala, F., Van de Wiel, C., Bredemeijer, G., Vosman, B., Matthes, M., Daly, A., Brettschneider, R., Bettini, P., Buiatti, M., Maestri, E., Malcevschi, A., Marmiroli, N., Aert, R., Volckaert, G., Rueda, J., Linacero, R., Vazquez, A., Karp, A.: Reproducibility testing of RAPD, AFLP and SSR markers in plants by a network of European laboratories. - Mol. Breed. 3: 381-390, 1997.
6. Kawchuk, L.M., Lynch, DR, Thomas, J., Penner, B., Sillito, D., Kulcsar, F.: Characterization of Solarium tuberosum simple sequence repeats and application to potato cultivar identification. - Amer. Potato J. 73: 325-335, 1996.
7. McGregor, C.E., Lambert, C.A., Greyling, M.M., Louw, J.H., Warnich, L.: A comparative assessment of DNA fingerprinting techniques (RAPD, ISSR, AFLP and SSR) in tetraploid potato (Solarium tuberosum L.) germplasm. -Euphytica 113: 135-144, 2000.
8. McLauchlan, A., Henry, R.J., Issac, P.G., Edwards, K.J.: Molecular marker systems in cultivated hexaploid wheat and wild wheat relatives. - In: Henry, R.J. (ed.): Plant Genotyping. The DNA Fingerprinting of Plants. Pp. 147-160. CAB International, Oxon 2001.
9. Milbourne, D., Meyer, R.C., Bradshaw, J.E., Baird, E., Bonar, N., Provan, J., Powell, W., Waugh, R.: Comparison of PCR-based marker systems for the analysis of genetic relationship in cultivated potato. - Mol. Breed. 3: 127-136, 1997.
10. Milbourne, D., Meyer, R.C., Collins, A.J., Ramsay, L.D., Gebhardt, C., Waugh, R.: Isolation, characterization and mapping of simple sequence repeat loci in potato. - Mol. gen. Genet. 259: 233-245, 1998.
11. Mitchell, S.E., Kresovich, S., Jester, C.A., Hernandez, C.A., Szewc-McFadden, A.K.: Application of multiplex PCR and fluorescence-based, semi-automated allele sizing technology for genotyping plant genetic resources. - Crop Sci. 37: 617-624, 1997.
12. Nei, M., Li, W.H.: Mathematical modeling for studying genetic variation in terms of restriction endonucleases. - Proc. nat. Acad. Sci. USA 74: 5267-5273, 1979.
13. Pattanayak, D., Chakrabarti, S.K. Naik, P.S.: Genetic diversity of late blight resistant and susceptible Indian potato cultivars revealed by RAPD markers. - Euphytica 128: 183-189, 2002.
14. Powell, W., Morgnate, M., Andre, C., Hanafey, M., Vogel, J., Tingey, S., Rafalsky, A.: The utility of RFLP. RAPD, AFLP and SSR (microsatellite markers for germplasm analysis. -Mol. Breed. 2: 225-238, 1996.
15. Provan, J., Powell, W., Waugh, R.: Microsatellite analysis of relationships within cultivated potato (Solanum tuberosum). - Theor. appl. Genet. 92: 1078-1084, 1996.
16. Reddy, P.V., Soliman, K.M.: Identification of wild and cultivated Hordeum species using two-primer RAPD fragments. - Biol. Plant. 39: 543-552, 1997.
17. Rohlf, F.J.: Numerical Taxonomy and Multivariate Analysis System, Version 2.0. - Exeter Software, New York 1998.
18. Samec, P., Pošvec, Z., Stejskal, J., Našinec, V., Griga, M.: Cultivar identification and relationships in Pisum sativum L. based on RAPD and isoenzymes. - Biol. Plant. 41: 39-48, 1998.
19. Sanchez-Escribano, E.M., Martin, J.R., Carreno, J., Cenis, J.L.: Use of sequence-tagged microsatellite site markers for characterizing table grape cultivars. - Genome 42: 87-93, 1999.
20. Schneider, K., Douches, D.S.: Assessment of PCR-based simple sequence repeats to fingerprint North American potato cultivars. - Amer. Potato J. 74: 149-160, 1997.
21. Taylor, G.N., Soliman, K.M.: Detection of polymorphic DNA and taxonomic relationships among 10 wild perennial soybean species using specific and arbitrary nucleotide primers. - Biol. Plant. 42: 25-37, 1999.
22. Weber, J., May, P.E.: Abundant class of human DNA polymorphism, which can be typed using the polymerase chain reaction. - Amer. J. human Genet. 44: 388-396, 1989.
23. Wenz, H.M., Robertson, J.M., Menchen, S., Oaks, F., Demorest, D.M., Schiebler, D., Rosenblaum, B.B., Wike, C., Gilbert, D.A., Efcavitch, J.W.: High precision genotyping by denaturing polyacrylamide electrophoresis. -Genome Res. 8: 69-80, 1998.
24. Westman, A.L., Kresovich, S.: The potential for cross-taxa simple-repeat (SSR) amplification between Arabidopsis thaliana L. and crop brassicas. - Theor. appl. Genet. 96: 272-281, 1998.
25. Ziegle, J.S., Su, Y., Corcoran, K.P., Nie, L., Maynard, P.E., Hoff, L.B., McBridge, L.J., Kronick, M.N., Diehl, S.R.: Application of automated DNA sizing technology for genotyping microsatellite loci. - Genomics (San Diego) 14: 1026-1031, 1992.