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Volumn , Issue , 2009, Pages 1-406

Probabilistic methods for bioinformatics: With an introduction to bayesian networks

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EID: 85133595939     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1016/C2009-0-16189-5     Document Type: Book
Times cited : (37)

References (115)
  • 6
    • 67650886343 scopus 로고
    • "Multivariate Analysis with Latent Variables,"
    • Bentler P.N. "Multivariate Analysis with Latent Variables,". Review of Psychology 1980, 31.
    • (1980) Review of Psychology , vol.31
    • Bentler, P.N.1
  • 8
    • 0022219585 scopus 로고
    • "A Method of Estimating from Two Aligned Present-Day Sequences Their Ancestral Composition and Subsequent Rates of Substitution, Possibly Different in Two Lineages, Corrected for Multiple and Parallel Substitutions at the Sites,"
    • Blaisdell V.E. "A Method of Estimating from Two Aligned Present-Day Sequences Their Ancestral Composition and Subsequent Rates of Substitution, Possibly Different in Two Lineages, Corrected for Multiple and Parallel Substitutions at the Sites,". Journal of Molecular Evolution 1985, 22.
    • (1985) Journal of Molecular Evolution , vol.22
    • Blaisdell, V.E.1
  • 10
    • 0002074731 scopus 로고
    • "The Recovery of Trees From Measurements of Dissimilarity,"
    • Edinburgh University Press, E.R. Hodson, D.G. Kendall, P. Tautu (Eds.)
    • Buneman P. "The Recovery of Trees From Measurements of Dissimilarity,". Mathematics in the Archeological and Historical Sciences 1971, Edinburgh University Press. E.R. Hodson, D.G. Kendall, P. Tautu (Eds.).
    • (1971) Mathematics in the Archeological and Historical Sciences
    • Buneman, P.1
  • 12
    • 0002607026 scopus 로고    scopus 로고
    • "Bayesian Classification (Autoclass): Theory and Results,"
    • AAAI Press, D. Fayyad, G. Piatetsky-Shapiro, P. Smyth, R. Uthurusamy (Eds.)
    • Cheeseman P., Stutz J. "Bayesian Classification (Autoclass): Theory and Results,". Advances in Knowledge Discovery and Data Mining 1996, AAAI Press. D. Fayyad, G. Piatetsky-Shapiro, P. Smyth, R. Uthurusamy (Eds.).
    • (1996) Advances in Knowledge Discovery and Data Mining
    • Cheeseman, P.1    Stutz, J.2
  • 15
    • 0025401005 scopus 로고
    • "The Computational Complexity of Probabilistic Inference Using Bayesian Belief Networks,"
    • Cooper G.F. "The Computational Complexity of Probabilistic Inference Using Bayesian Belief Networks,". Artificial Intelligence 1990, 33.
    • (1990) Artificial Intelligence , vol.33
    • Cooper, G.F.1
  • 16
    • 34249832377 scopus 로고
    • "A Bayesian Method for the Induction of Probabilistic Networks from Data,"
    • Cooper G.F., Herskovits E. "A Bayesian Method for the Induction of Probabilistic Networks from Data,". Machine Learning 1992, 9.
    • (1992) Machine Learning , vol.9
    • Cooper, G.F.1    Herskovits, E.2
  • 17
    • 0027330925 scopus 로고
    • "Yeast GI Cyclins CLN1 and CLN2 and a GAP-like Protein Have a Role in Bud Formation,"
    • Cvrckova F., Nasmyth K. "Yeast GI Cyclins CLN1 and CLN2 and a GAP-like Protein Have a Role in Bud Formation,". EMBO. J. 1993, 12.
    • (1993) EMBO. J. , vol.12
    • Cvrckova, F.1    Nasmyth, K.2
  • 19
    • 0027560587 scopus 로고
    • "Approximate Probabilistic Inference in Bayesian Belief Networks Is NP-hard,"
    • Dagum P., Luby M. "Approximate Probabilistic Inference in Bayesian Belief Networks Is NP-hard,". Artificial Intelligence 1993, 60(1).
    • (1993) Artificial Intelligence , vol.60 , Issue.1
    • Dagum, P.1    Luby, M.2
  • 20
    • 0001918661 scopus 로고
    • "La prévision: See Lois Logiques, ses Sources Subjectives,"
    • de Finetti B. "La prévision: See Lois Logiques, ses Sources Subjectives,". Annales de l'Institut Henri Poincaré 1937, 7.
    • (1937) Annales de l'Institut Henri Poincaré , vol.7
    • de Finetti, B.1
  • 21
    • 57749191683 scopus 로고    scopus 로고
    • "Canonical Probabilistic Models for Knowledge Engineering,"
    • Technical Report IA-02-01, Dpto. Inteligencia Artificial, UNED, Madrid
    • Diez, F.J., and M.J. Druzdzel, "Canonical Probabilistic Models for Knowledge Engineering," Technical Report IA-02-01, Dpto. Inteligencia Artificial, UNED, Madrid, 2002.
    • (2002)
    • Diez, F.J.1    Druzdzel, M.J.2
  • 28
    • 0038558013 scopus 로고    scopus 로고
    • "Exact Genetic Linkage Computations for General Pedigrees,"
    • Fishelson M., Geiger D. "Exact Genetic Linkage Computations for General Pedigrees,". Bioinformatics 2002, 18(supplement 1).
    • (2002) Bioinformatics , vol.18
    • Fishelson, M.1    Geiger, D.2
  • 30
    • 0037262841 scopus 로고    scopus 로고
    • "Being Bayesian about Network Structure: A Bayesian Approach to Structure Discovery in Bayesian Networks,"
    • Friedman N., Koller K. "Being Bayesian about Network Structure: A Bayesian Approach to Structure Discovery in Bayesian Networks,". Machine Learning 2003, 20.
    • (2003) Machine Learning , vol.20
    • Friedman, N.1    Koller, K.2
  • 34
    • 0026099641 scopus 로고
    • "Robustness of Maximum Likelihood Tree Estimation Against Different Patterns of Base Substitutions,"
    • Fukami-Kobayashi K., Tateno Y. "Robustness of Maximum Likelihood Tree Estimation Against Different Patterns of Base Substitutions,". Journal of Molecular Evolution 1991, 32(1).
    • (1991) Journal of Molecular Evolution , vol.32 , Issue.1
    • Fukami-Kobayashi, K.1    Tateno, Y.2
  • 35
    • 0007319555 scopus 로고
    • "Weighing and Integrating Evidence for Stochastic Simulation in Bayesian Networks,"
    • North-Holland, M. Henrion, R.D. Shachter, L.N. Kanal, J.F. Lemmer (Eds.)
    • Fung R., Chang K. "Weighing and Integrating Evidence for Stochastic Simulation in Bayesian Networks,". Uncertainty in Artificial Intelligence 5 1990, North-Holland. M. Henrion, R.D. Shachter, L.N. Kanal, J.F. Lemmer (Eds.).
    • (1990) Uncertainty in Artificial Intelligence 5
    • Fung, R.1    Chang, K.2
  • 39
    • 0003860037 scopus 로고    scopus 로고
    • Chapman & Hall/CRC, W.R. Gilks, S. Richardson, D.J. Spiegelhalter (Eds.)
    • Markov Chain Monte Carlo in Practice 1996, Chapman & Hall/CRC. W.R. Gilks, S. Richardson, D.J. Spiegelhalter (Eds.).
    • (1996) Markov Chain Monte Carlo in Practice
  • 41
    • 0029068893 scopus 로고
    • "Maximum Likelihood Estimation of the Heterogeneity of Substitution Rates Among Nucleotide Sites,"
    • Gu X., Fu Y.-X, Li W.-H "Maximum Likelihood Estimation of the Heterogeneity of Substitution Rates Among Nucleotide Sites,". Molecular Biology and Evolution 1995, 12.
    • (1995) Molecular Biology and Evolution , vol.12
    • Gu, X.1    Fu, Y.-X.2    Li, W.-H.3
  • 42
    • 0030886602 scopus 로고    scopus 로고
    • "A Direct Link Between Sister Chromatid Cohesion and Chromosome Condensation Revealed Through the Analysis of MCDI in s. cerevisiae,"
    • Guacci V., Koshland D., Strunnikov A. "A Direct Link Between Sister Chromatid Cohesion and Chromosome Condensation Revealed Through the Analysis of MCDI in s. cerevisiae,". Cell 1997, 9(1).
    • (1997) Cell , vol.9 , Issue.1
    • Guacci, V.1    Koshland, D.2    Strunnikov, A.3
  • 45
    • 0027565033 scopus 로고
    • "Relative Efficiencies of the Maximum Likelihood, Maximum Parsimony, and Neighbor-Joining Methods for Estimating Protein Phylogeny,"
    • Hasegawa M., Fujiwara M. "Relative Efficiencies of the Maximum Likelihood, Maximum Parsimony, and Neighbor-Joining Methods for Estimating Protein Phylogeny,". Molecular Phylogenetics and Evolution 1993, 2(1).
    • (1993) Molecular Phylogenetics and Evolution , vol.2 , Issue.1
    • Hasegawa, M.1    Fujiwara, M.2
  • 46
    • 77956890234 scopus 로고
    • "Monte Carlo Sampling Methods Using Markov Chains and Their Applications,"
    • Hastings W.K. "Monte Carlo Sampling Methods Using Markov Chains and Their Applications,". Biometrika 1970, 57(1).
    • (1970) Biometrika , vol.57 , Issue.1
    • Hastings, W.K.1
  • 47
    • 0003846041 scopus 로고    scopus 로고
    • "A Tutorial on Learning with Bayesian Networks,"
    • Technical Report # MSR-TR-95-06, Microsoft Research
    • Heckerman, D., "A Tutorial on Learning with Bayesian Networks," Technical Report # MSR-TR-95-06, Microsoft Research, 1996.
    • (1996)
    • Heckerman, D.1
  • 48
    • 21244466733 scopus 로고    scopus 로고
    • "Embedded Bayesian Network Classifiers,"
    • Technical Report MSR-TR-97-06, Microsoft Research, Redmond, Washington
    • Heckerman, D., and C. Meek, "Embedded Bayesian Network Classifiers," Technical Report MSR-TR-97-06, Microsoft Research, Redmond, Washington, 1997.
    • (1997)
    • Heckerman, D.1    Meek, C.2
  • 49
    • 0008605871 scopus 로고
    • "Kutató: An Entropy-Driven System for the Construction of Probabilistic Expert Systems from Databases,"
    • North-Holland, R.D. Shachter, T.S. Levitt, L.N. Kanal, J.F. Lemmer (Eds.)
    • Herskovits E.H., Cooper G.F. "Kutató: An Entropy-Driven System for the Construction of Probabilistic Expert Systems from Databases,". Uncertainty in Artificial Intelligence; Proceedings of the Sixth Conference 1990, North-Holland. R.D. Shachter, T.S. Levitt, L.N. Kanal, J.F. Lemmer (Eds.).
    • (1990) Uncertainty in Artificial Intelligence; Proceedings of the Sixth Conference
    • Herskovits, E.H.1    Cooper, G.F.2
  • 51
    • 0029113744 scopus 로고
    • "The Robustness of Two Phylogenetic Methods: Four-Taxon Simulations Reveal a Slight Superiority of Maximum Likelihood Over Neighbor-Joining,"
    • Huelsenbeck J.P. "The Robustness of Two Phylogenetic Methods: Four-Taxon Simulations Reveal a Slight Superiority of Maximum Likelihood Over Neighbor-Joining,". Molecular Biology and Evolution 1995, 12(5).
    • (1995) Molecular Biology and Evolution , vol.12 , Issue.5
    • Huelsenbeck, J.P.1
  • 54
    • 0025061094 scopus 로고
    • "Limitations of the Evolutionary Method of Phylogenetic Analysis,"
    • Jin L., Nei M. "Limitations of the Evolutionary Method of Phylogenetic Analysis,". Molecular Biology and Evolution 1990, 7(1).
    • (1990) Molecular Biology and Evolution , vol.7 , Issue.1
    • Jin, L.1    Nei, M.2
  • 57
    • 0020748627 scopus 로고
    • "3-Point Approximations for Continuous Random Variables,"
    • Keefer D.L. "3-Point Approximations for Continuous Random Variables,". Management Science 1983, 29.
    • (1983) Management Science , vol.29
    • Keefer, D.L.1
  • 60
    • 0019296687 scopus 로고
    • "A Simple Model for Estimating Evolutionary Rates of Base Substitutions Through Comparative Studies of Nucleotide Sequences,"
    • Kimura M. "A Simple Model for Estimating Evolutionary Rates of Base Substitutions Through Comparative Studies of Nucleotide Sequences,". Molecular Evolution 1980, 16.
    • (1980) Molecular Evolution , vol.16
    • Kimura, M.1
  • 61
    • 0027623753 scopus 로고
    • "Linear-Space Best-First Search,"
    • Korf R. "Linear-Space Best-First Search,". Artificial Intelligence 1993, 62.
    • (1993) Artificial Intelligence , vol.62
    • Korf, R.1
  • 62
    • 0028177080 scopus 로고
    • "A Simulation Comparison of Phylogeny Algorithms Under Equal and Unequal Evolution Rates,"
    • Kuhner M.K., Felsenstein J. "A Simulation Comparison of Phylogeny Algorithms Under Equal and Unequal Evolution Rates,". Molecular Biology and Evolution 1994, 11(3).
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.3
    • Kuhner, M.K.1    Felsenstein, J.2
  • 64
    • 49749119715 scopus 로고    scopus 로고
    • "Modeling and Valuing Real Options Using Influence Diagrams,"
    • School of Business Working Paper No. 283, University of Kansas
    • Lander, D. M., and P. Shenoy, "Modeling and Valuing Real Options Using Influence Diagrams," School of Business Working Paper No. 283, University of Kansas, 1999.
    • (1999)
    • Lander, D.M.1    Shenoy, P.2
  • 65
    • 0001006209 scopus 로고
    • "Local Computation with Probabilities in Graphical Structures and Their Applications to Expert Systems,"
    • Lauritzen S.L., Spiegelhalter D.J. "Local Computation with Probabilities in Graphical Structures and Their Applications to Expert Systems,". Journal of the Royal Statistical Society B 1988, 50(2).
    • (1988) Journal of the Royal Statistical Society B , vol.50 , Issue.2
    • Lauritzen, S.L.1    Spiegelhalter, D.J.2
  • 67
    • 0028466297 scopus 로고
    • "Efficient Inference in Bayes' Networks as a Combinatorial Optimization Problem,"
    • Li Z., D'Ambrosio B. "Efficient Inference in Bayes' Networks as a Combinatorial Optimization Problem,". International Journal of Approximate Inference 1994, 11.
    • (1994) International Journal of Approximate Inference , vol.11
    • Li, Z.1    D'Ambrosio, B.2
  • 68
    • 0025061094 scopus 로고
    • "Limitations of the Evolutionary Parsimony Method of Phylogenetic Analysis,"
    • Li J., Nei M. "Limitations of the Evolutionary Parsimony Method of Phylogenetic Analysis,". Molecular Biology and Evolution 1990, 7(1).
    • (1990) Molecular Biology and Evolution , vol.7 , Issue.1
    • Li, J.1    Nei, M.2
  • 70
    • 0028904997 scopus 로고
    • "Dehydrotestosterone Is the Active Androgen in the Maintenance of Nitric Oxide-Mediated Penile Erection in the Rat,"
    • Lugg J.A., Raifer J., González C.N.F. "Dehydrotestosterone Is the Active Androgen in the Maintenance of Nitric Oxide-Mediated Penile Erection in the Rat,". Endocrinology 1995, 136(4).
    • (1995) Endocrinology , vol.136 , Issue.4
    • Lugg, J.A.1    Raifer, J.2    González, C.N.F.3
  • 71
    • 85133595702 scopus 로고    scopus 로고
    • "Finasteride: A Review of Its Use in Male Pattern Baldness,"
    • McClennan K.J., Markham A. "Finasteride: A Review of Its Use in Male Pattern Baldness,". Drugs 1999, 57(1).
    • (1999) Drugs , vol.57 , Issue.1
    • McClennan, K.J.1    Markham, A.2
  • 73
    • 0037117685 scopus 로고    scopus 로고
    • "Genetic Programming and Rough Sets: A Hybrid Approach to Bankruptcy Classification,"
    • McKee T.E., Lensberg T. "Genetic Programming and Rough Sets: A Hybrid Approach to Bankruptcy Classification,". Journal of Operational Research 2002, 138.
    • (2002) Journal of Operational Research , vol.138
    • McKee, T.E.1    Lensberg, T.2
  • 77
    • 44049116681 scopus 로고
    • "Connectionist Learning of Belief Networks,"
    • Neal R. "Connectionist Learning of Belief Networks,". Artificial Intelligence 1992, 56.
    • (1992) Artificial Intelligence , vol.56
    • Neal, R.1
  • 79
    • 0011729197 scopus 로고
    • "A Survey of Uncertain and Approximate Inference,"
    • Wiley, L. Zadeh, J. Kacprzyk (Eds.)
    • Neapolitan R.E. "A Survey of Uncertain and Approximate Inference,". Fuzzy Logic for the Management of Uncertainty 1992, Wiley. L. Zadeh, J. Kacprzyk (Eds.).
    • (1992) Fuzzy Logic for the Management of Uncertainty
    • Neapolitan, R.E.1
  • 84
    • 33846691679 scopus 로고    scopus 로고
    • "Phylogenetic Reconstruction: Increasing the Accuracy of Pairwise Distance Estimation Using Bayesian Inference of Evolutionary Rates,"
    • Ninio M., Privman E., Pupko T., Friedman N. "Phylogenetic Reconstruction: Increasing the Accuracy of Pairwise Distance Estimation Using Bayesian Inference of Evolutionary Rates,". Bioinformatics 2006, 23.
    • (2006) Bioinformatics , vol.23
    • Ninio, M.1    Privman, E.2    Pupko, T.3    Friedman, N.4
  • 86
    • 46149134436 scopus 로고
    • "Fusion, Propagation, and Structuring in Belief Networks,"
    • Pearl J. "Fusion, Propagation, and Structuring in Belief Networks,". Artificial Intelligence 1986, 29.
    • (1986) Artificial Intelligence , vol.29
    • Pearl, J.1
  • 89
    • 0009169408 scopus 로고
    • "The Logic of Influence Diagrams,"
    • Wiley, (a shorter version originally appeared in Kybernetica, Vol. 25, No. 2, 1989.), R.M. Oliver, J.Q. Smith (Eds.)
    • Pearl J., Geiger D., Verma T.S. "The Logic of Influence Diagrams,". Influence Diagrams, Belief Networks and Decision Analysis 1990, Wiley, (a shorter version originally appeared in Kybernetica, Vol. 25, No. 2, 1989.). R.M. Oliver, J.Q. Smith (Eds.).
    • (1990) Influence Diagrams, Belief Networks and Decision Analysis
    • Pearl, J.1    Geiger, D.2    Verma, T.S.3
  • 95
    • 0346532088 scopus 로고
    • "The Bonferroni and the Scheffe Multiple Comparison Procedures,"
    • Savin N.E. "The Bonferroni and the Scheffe Multiple Comparison Procedures,". Review of Economic Studies 1980, 47(1).
    • (1980) Review of Economic Studies , vol.47 , Issue.1
    • Savin, N.E.1
  • 98
    • 0001203638 scopus 로고
    • "Simulation Approaches to General Probabilistic Inference in Bayesian Networks,"
    • North-Holland, M. Henrion, R.D. Shachter, L.N. Kanal, J.F. Lemmer (Eds.)
    • Shachter R.D., Peot M. "Simulation Approaches to General Probabilistic Inference in Bayesian Networks,". Uncertainty in Artificial Intelligence 5 1990, North-Holland. M. Henrion, R.D. Shachter, L.N. Kanal, J.F. Lemmer (Eds.).
    • (1990) Uncertainty in Artificial Intelligence 5
    • Shachter, R.D.1    Peot, M.2
  • 100
    • 1542510106 scopus 로고    scopus 로고
    • "Phylogenetic Estimation of Context-Dependent Substitution Rates by Maximum Likelihood,"
    • Siepel A., Haussler D. "Phylogenetic Estimation of Context-Dependent Substitution Rates by Maximum Likelihood,". Molecular Biology and Evolution 2004, 21(3).
    • (2004) Molecular Biology and Evolution , vol.21 , Issue.3
    • Siepel, A.1    Haussler, D.2
  • 105
    • 0028205953 scopus 로고
    • "Relative Efficiencies of the Maximum-Likelihood, Neighbor-Joining, and Maximum Parsimony Methods When Substitution Rate Varies with Site,"
    • Tateno T.Y., Takezaki N., Nei M. "Relative Efficiencies of the Maximum-Likelihood, Neighbor-Joining, and Maximum Parsimony Methods When Substitution Rate Varies with Site,". Molecular Biology and Evolution 1994, 11(2).
    • (1994) Molecular Biology and Evolution , vol.11 , Issue.2
    • Tateno, T.Y.1    Takezaki, N.2    Nei, M.3
  • 106
    • 0001789959 scopus 로고    scopus 로고
    • "Introduction to General State-Space Markov Chain Theory,"
    • Chapman & Hall/CRC, W.R. Gilks, S. Richardson, D.J. Spiegelhalter (Eds.)
    • Tierney L. "Introduction to General State-Space Markov Chain Theory,". Markov Chain Monte Carlo in Practice 1996, Chapman & Hall/CRC. W.R. Gilks, S. Richardson, D.J. Spiegelhalter (Eds.).
    • (1996) Markov Chain Monte Carlo in Practice
    • Tierney, L.1
  • 107
    • 0011565585 scopus 로고
    • "Random Sequences,"
    • Ph.D. thesis, University of Amsterdam
    • van Lambalgen, M., "Random Sequences," Ph.D. thesis, University of Amsterdam, 1987.
    • (1987)
    • van Lambalgen, M.1
  • 108
    • 0002899344 scopus 로고
    • "Grundlagen der Wahrscheinlichkeitsrechnung,"
    • von Mises R. "Grundlagen der Wahrscheinlichkeitsrechnung,". Mathematische Zeitschrift 1919, 5.
    • (1919) Mathematische Zeitschrift , vol.5
    • von Mises, R.1
  • 109
    • 85133623936 scopus 로고
    • "General Methods of Sequence Comparisons,"
    • Waterman M.S. "General Methods of Sequence Comparisons,". Mathematical Biology 1984, 46.
    • (1984) Mathematical Biology , vol.46
    • Waterman, M.S.1
  • 112
    • 0028064845 scopus 로고
    • "Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates Over Sites: Approximate Methods,"
    • Yang Z. "Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates Over Sites: Approximate Methods,". Journal of Molecular Evolution 1994, 39(3).
    • (1994) Journal of Molecular Evolution , vol.39 , Issue.3
    • Yang, Z.1
  • 113
    • 0030451420 scopus 로고    scopus 로고
    • "Among-Site Rate Variation and Its Impact on Phylogenetic Analysis,"
    • Yang Z. "Among-Site Rate Variation and Its Impact on Phylogenetic Analysis,". Trends in Ecology and Evolution 1996, 11.
    • (1996) Trends in Ecology and Evolution , vol.11
    • Yang, Z.1
  • 114
    • 84942928572 scopus 로고
    • "Probability Theory and Fuzzy Logic Are Complementary Rather Than Competitive,"
    • Zadeh L. "Probability Theory and Fuzzy Logic Are Complementary Rather Than Competitive,". Technometrics 1995, 37.
    • (1995) Technometrics , vol.37
    • Zadeh, L.1
  • 115
    • 0028108336 scopus 로고
    • "Estimation of Evolutionary Distances Between Nucleotide Sequences,"
    • Zharkikh A. "Estimation of Evolutionary Distances Between Nucleotide Sequences,". Journal of Molecular Evolution 1994, 39.
    • (1994) Journal of Molecular Evolution , vol.39
    • Zharkikh, A.1


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