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Volumn 665, Issue , 2003, Pages 355-366

Highly Accurate Real-Time Classification of Channel-Captured DNA Termini

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; CLASSIFICATION (OF INFORMATION); DNA; HIDDEN MARKOV MODELS; MIXTURES;

EID: 85113818368     PISSN: 0094243X     EISSN: 15517616     Source Type: Conference Proceeding    
DOI: 10.1063/1.1584910     Document Type: Conference Paper
Times cited : (9)

References (26)
  • 1
    • 0032762996 scopus 로고    scopus 로고
    • Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single rna molecules
    • Akeson M, D. Branton, J.J. Kasianowicz, E. Brandin, D.W. Deamer. 1999. Microsecond Time-Scale Discrimination Among Polycytidylic Acid, Polyadenylic Acid, and Polyuridylic Acid as Homopolymers or as Segments Within Single RNA Molecules. Biophys. J. 77(6):3227-3233.
    • (1999) Biophys. J. , vol.77 , Issue.6 , pp. 3227-3233
    • Akeson, M.1    Branton, D.2    Kasianowicz, J.J.3    Brandin, E.4    Deamer, D.W.5
  • 2
    • 0012838456 scopus 로고    scopus 로고
    • Pore planning: Functional membrane proteins by design
    • Bayley, H. 2000. Pore planning: Functional membrane proteins by design. J. Gen. Physiol. 116. 1
    • (2000) J. Gen. Physiol. , vol.116 , pp. 1
    • Bayley, H.1
  • 3
    • 0001849156 scopus 로고    scopus 로고
    • Multicategory classification by support vector machines
    • Bredensteiner, E.J.; and K.P. Bennett. 1999. Multicategory classification by support vector machines. Comput. Optim. and Appl. 12. 53-79.
    • (1999) Comput. Optim. And Appl. , vol.12 , pp. 53-79
    • Bredensteiner, E.J.1    Bennett, K.P.2
  • 4
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges, C.J.C. 1998. A tutorial on support vector machines for pattern recognition. Data Min. Knowl. Discov., 2. 121-67.
    • (1998) Data Min. Knowl. Discov. , vol.2 , pp. 121-167
    • Burges, C.J.C.1
  • 5
    • 0025716139 scopus 로고
    • Characterization of single channel currents using digital signal processing techniques based on Hidden Markov models
    • Chung, S.H., J.B. Moore, L. Xia, L. S. Premkumar, and P. W. Gage. 1990. Characterization of single channel currents using digital signal processing techniques based on Hidden Markov models. Phil. Trans. R. Soc. Lond. B 329. 265-285.
    • (1990) Phil. Trans. R. Soc. Lond. B , vol.329 , pp. 265-285
    • Chung, S.H.1    Moore, J.B.2    Xia, L.3    Premkumar, L.S.4    Gage, P.W.5
  • 6
    • 0032311432 scopus 로고    scopus 로고
    • Signal processing techniques for channel current analysis based on hidden Markov models
    • Part B. P. M. Conn editior Academic Press, Inc., San Diego.
    • Chung, S-H., and P. W. Gage. 1998. Signal processing techniques for channel current analysis based on hidden Markov models. In Methods in Enzymology; Ion channels, Part B. P. M. Conn editior. Academic Press, Inc., San Diego. 420-437.
    • (1998) Methods in Enzymology; Ion Channels , pp. 420-437
    • Chung, S.-H.1    Gage, P.W.2
  • 7
    • 0003996053 scopus 로고
    • Fitting and statistical analysis of single-channel products
    • B. Sakmann and E. Neher editors. Second edition Plenum Publishing Corp., New York.
    • Colquhoun, D., and F. J. Sigworth. 1995. Fitting and statistical analysis of single-channel products. In Single-channel recording. B. Sakmann and E. Neher editors. Second edition. Plenum Publishing Corp., New York. 483-587.
    • (1995) Single-channel Recording , pp. 483-587
    • Colquhoun, D.1    Sigworth, F.J.2
  • 10
    • 0034733465 scopus 로고    scopus 로고
    • Utility of the wavelet transform to analyze the stationarity of single ionic channel recordings
    • Diserbo M, P. Masson, P. Gourmelon, and R. Caterini, 2000. Utility of the wavelet transform to analyze the stationarity of single ionic channel recordings. J. Neurosci. Methods 99(1-2):137-141.
    • (2000) J. Neurosci. Methods , vol.99 , Issue.1-2 , pp. 137-141
    • Diserbo, M.1    Masson, P.2    Gourmelon, P.3    Caterini, R.4
  • 12
    • 0028567173 scopus 로고
    • Subunit stoichiometry of staphylococcal alpha-hemolysin in crystals and on membranes: A heptameric transmembrane pore
    • Gouaux J.E., 0. Braha, M.R. Hobaugh, L. Song, S. Cheley, C. Shustak, and H. Bayley, 1994. Subunit stoichiometry of staphylococcal alpha-hemolysin in crystals and on membranes: A heptameric transmembrane pore. Proc. Natl. Acad. Sci. USA 91:12828-12831.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 12828-12831
    • Gouaux, J.E.1    Braha, O.2    Hobaugh, M.R.3    Song, L.4    Cheley, S.5    Shustak, C.6    Bayley, H.7
  • 13
    • 0002853450 scopus 로고    scopus 로고
    • Exploiting generative models in discriminative classifiers
    • Cambridge, MA, MIT Press
    • Jaakkola, T. S., and D. Haussler. 1998. Exploiting generative models in discriminative classifiers. In Advances in Neural Processing Systems 11. Cambridge, MA, 1999. MIT Press.
    • (1998) Advances in Neural Processing Systems , vol.11 , pp. 1999
    • Jaakkola, T.S.1    Haussler, D.2
  • 14
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale SVM learning practical
    • B. Scholkopf C. J. C. Burges, and A. J. Smola editors MIT Press, Cambridge, USA. Ch. 11
    • Joachims, T. 1998. Making large-scale SVM learning practical. In Advances in Kernel Methods-Support Vector Learning. B. Scholkopf, C. J. C. Burges, and A. J. Smola editors. MIT Press, Cambridge, USA. Ch. 11.
    • (1998) Advances in Kernel Methods-Support Vector Learning
    • Joachims, T.1
  • 15
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • Kasianowicz, J.J., E. Brandin, D. Branton, and D.W. Deamer, 1996. Characterization of Individual Polynucleotide Molecules Using a Membrane Channel. Proc. Natl. Acad. Sci. USA 93(24):13770-13773.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , Issue.24 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 18
    • 0035831563 scopus 로고    scopus 로고
    • Voltage-driven DNA translocations through a nanopore
    • Meller A, L. Nivon, and D. Branton, 2001. Voltage-driven DNA translocations through a nanopore. Phys. Rev. Lett. 86(15):3435-3438.
    • (2001) Phys. Rev. Lett. , vol.86 , Issue.15 , pp. 3435-3438
    • Meller, A.1    Nivon, L.2    Branton, D.3
  • 19
    • 0031334889 scopus 로고    scopus 로고
    • An improved training algorithm for support vector machines
    • J. Principe, L. Gile, N. Morgan, and E. Wilson editors IEEE, New York.
    • Osuna, E.; R. Freund, and F. Girosi. 1997. An improved training algorithm for support vector machines. In Neural Networks for Signal Processing VII. J. Principe, L. Gile, N. Morgan, and E. Wilson editors. IEEE, New York. 276-85.
    • (1997) Neural Networks for Signal Processing , vol.7 , pp. 276-285
    • Osuna, E.1    Freund, R.2    Girosi, F.3
  • 21
    • 85113772580 scopus 로고    scopus 로고
    • MIT Press, Cambridge, USA. Ch. 12
    • Scholkopf, C. J. C. Burges, and A. J. Smola editors. MIT Press, Cambridge, USA. Ch. 12.
    • Burges C. J., S.C.1    Smola, A.J.2
  • 22
    • 0032539693 scopus 로고    scopus 로고
    • A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
    • 365
    • SantaLucia J. 1998. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc. Natl. Acad. Sci. USA 95(4):1460-1465. 365
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , Issue.4 , pp. 1460-1465
    • SantaLucia, J.1
  • 23
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore
    • Song L., M.R. Hobaugh, C. Shustak, S. Cheley, H. Bayley, and J.E. Gouaux, 1996. Structure of Staphylococcal Alpha-Hemolysin, a Heptameric Transmembrane Pore. Science 274 (5294):1859-1866.
    • (1996) Science , vol.274 , Issue.5294 , pp. 1859-1866
    • Song, L.1    Hobaugh, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 25
    • 0035107270 scopus 로고    scopus 로고
    • Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel
    • Vercoutere W., S. Winters-Hilt, H. Olsen, D.W. Deamer, D. Haussler, and M. Akeson, 2001. Rapid discrimination among individual DNA hairpin molecules at single-nucleotide resolution using an ion channel. Nat. Biotechnol. 19 (3):248-252
    • (2001) Nat. Biotechnol. , vol.19 , Issue.3 , pp. 248-252
    • Vercoutere, W.1    Winters-Hilt, S.2    Olsen, H.3    Deamer, D.W.4    Haussler, D.5    Akeson, M.6
  • 26
    • 0037306228 scopus 로고    scopus 로고
    • Highly accurate classification of watson-crick base-pairs on termini of single dna molecules
    • Winters-Hilt, S., W. Vercoutere, V. S. DeGuzman, D.W. Deamer, M. Akeson, and D. Haussler, 2003. Highly Accurate Classification of Watson-Crick Base-Pairs on Termini of Single DNA Molecules. Biophys. J. 84 (2) 1-10.
    • (2003) Biophys. J. , vol.84 , Issue.2 , pp. 1-10
    • Winters-Hilt, S.1    Vercoutere, W.2    DeGuzman, V.S.3    Deamer, D.W.4    Akeson, M.5    Haussler, D.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.