Erratum: Ancestral vinclozolin exposure alters the epigenetic transgenerational inheritance of sperm small noncoding RNAs (Environmental Epigenetics DOI: 10.1093/eep/dvw001);Ancestral vinclozolin exposure alters the epigenetic transgenerational inheritance of sperm small noncoding RNAs

Environmental Epigenetics

Volumn 2, Issue 1, 2016, Pages

  Schuster, Andrew ^a   Skinner, Michael K ^b   Yan, Wei ^a  

^a UNIVERSITY OF NEVADA SCHOOL OF MEDICINE   (United States)

^b WASHINGTON STATE UNIVERSITY   (United States)

Author keywords

epigenetic inheritance; noncoding RNA; sperm; transgenerational; vinclozolin

Indexed keywords

EID: 85107690181     PISSN: None     EISSN: 20585888     Source Type: Journal    
DOI: 10.1093/eep/dvw004     Document Type: Erratum

References (57)

1. Anway MD, Cupp AS, Uzumcu M et al. Epigenetic transgenerational actions of endocrine disruptors and male fertility. Science 2005;308:1466-9.
2. Anway MD, Leathers C, Skinner MK. Endocrine disruptor vinclozolin induced epigenetic transgenerational adult-onset disease. Endocrinology 2006;147:5515-23.
3. Nilsson EE, Skinner MK. Environmentally induced epigenetic transgenerational inheritance of disease susceptibility. Transl Res 2015;165:12-7.
4. Yan W. Potential roles of noncoding RNAs in environmental epigenetic transgenerational inheritance. Mol Cell Endocrinol 2014;398:24-30.
5. Bruner-Tran KL, Osteen KG. Developmental exposure to TCDD reduces fertility and negatively affects pregnancy outcomes across multiple generations. Reprod Toxicol 2011;31:344-50.
6. Manikkam M, Guerrero-Bosagna C, Tracey R et al. Transgenerational actions of environmental compounds on reproductive disease and identification of epigenetic biomarkers of ancestral exposures. PLoS One 2012;7:e31901.
7. Manikkam M, Tracey R, Guerrero-Bosagna C et al. Plastics derived endocrine disruptors (BPA, DEHP and DBP) induce epigenetic transgenerational inheritance of adult-onset disease and sperm epimutations. PLoS One 2013;8:e55387.
8. Rissman EF, Adli M. Minireview: Transgenerational epigenetic inheritance: Focus on endocrine disrupting compounds. Endocrinology 2014;155:2770-80.
9. Manikkam M, Haque MM, Guerrero-Bosagna C et al. Pesticide methoxychlor promotes the epigenetic transgenerational inheritance of adult onset disease through the female germline. PLoS One 2014;9:e102091.
10. Guerrero-Bosagna C, Settles M, Lucker B et al. Epigenetic transgenerational actions of vinclozolin on promoter regions of the sperm epigenome. PLoS One 2010;5:e13100.
11. Skinner M, Guerrero-Bosagna C, Haque MM et al. Environmentally induced transgenerational epigenetic reprogramming of primordial germ cells and subsequent germline. PLoS One 2013;8:e66318.
12. Skinner MK, Savenkova M, Zhang B et al. Gene bionetworks involved in epigenetic transgenerational inheritance of altered mate preference: Environmental epigenetics and evolutionary biology. BMC Genomics 2014;16:337.
13. Casas E, Vavouri T. Sperm epigenomics: Challenges and opportunities. Front Genet 2014;5:330.
14. Sendler E, Johnson GD, Mao S et al. Stability, delivery and functions of human sperm RNAs at fertilization. Nucleic Acids Res 2013;41:4104-17.
15. Krawetz SA, Kruger A, Lalancette C et al. A survey of small RNAs in human sperm. Hum Reprod 2011;26:3401-12.
16. Ostermeier GC, Miller D, Huntriss JD et al. Reproductive biology: Delivering spermatozoan RNA to the oocyte. Nature 2004;429:154.
17. Jodar M, Selvaraju S, Sendler E et al. The presence, role and clinical use of spermatozoal RNAs. Hum Reprod Update 2013;19:604-24.
18. Wagner KD, Wagner N, Ghanbarian H et al. RNA induction and inheritance of epigenetic cardiac hypertrophy in the mouse. Dev Cell 2008;14:962-9.
19. Rassoulzadegan M, Grandjean V, Gounon P et al. RNA-mediated non-mendelian inheritance of an epigenetic change in the mouse. Nature 2006;441:469-74.
20. Yuan S, Oliver D, Schuster A et al. Breeding scheme and maternal small RNAs affect the efficiency of transgenerational inheritance of a paramutation in mice. Sci Rep 2015;5:9266.
21. Gapp K, Jawaid A, Sarkies P et al. Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice. Nat Neurosci 2014;17:667-9.
22. Ortogero N, Schuster AS, Oliver DK et al. A novel class of somatic small RNAs similar to germ cell pachytene PIWI-interacting small RNAs. J Biol Chem 2014;289:32824-34.
23. Ro S, Ma HY, Park C et al. The mitochondrial genome encodes abundant small noncoding RNAs. Cell Res. 2013;23:759-74.
24. Peng H, Shi J, Zhang Y et al. A novel class of tRNA-derived small RNAs extremely enriched in mature mouse sperm. Cell Res 2012;22:1609-12.
25. Gebetsberger J, Polacek N. Slicing tRNAs to boost functional ncRNA diversity. RNA Biol 2013;10:1798-806.
26. Kiani J, Grandjean V, Liebers R et al. RNA-mediated epigenetic heredity requires the cytosine methyltransferase Dnmt2. PLoS Genet 2013;9:e1003498.
27. Bartel DP. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 2004;116:281-97.
28. Kumar P, Anaya J, Mudunuri SB et al. Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets. BMC Biol 2014;12:78.
29. Ivanov P, Emara MM, Villen J et al. Angiogenin-induced tRNA fragments inhibit translation initiation. Mol Cell 2011;43:613-23.
30. Elbarbary RA, Takaku H, Uchiumi N et al. Modulation of gene expression by human cytosolic tRNase Z(L) through 50-halftRNA. PLoS One 2009;4:e5908.
31. Yamasaki S, Ivanov P, Hu GF et al. Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 2009;185:35-42.
32. Wang Q, Lee I, Ren J et al. Identification and functional characterization of tRNA-derived RNA fragments (tRFs) in respiratory syncytial virus infection. Mol Ther 2013;21:368-79.
33. Sobala A, Hutvagner G. Small RNAs derived from the 50 end of tRNA can inhibit protein translation in human cells. RNA Biol 2013;10:553-63.
34. Flicek P, Amode MR, Barrell D et al. Ensembl 2014. Nucleic Acids Res 2014;42(Database issue):D749-55.
35. Rehmsmeier M, Steffen P, Hochsmann M et al. Fast and effective prediction of microRNA/target duplexes. RNA 2004;10:1507-17.
36. Kruger J, Rehmsmeier M. RNAhybrid: MicroRNA target prediction easy, fast and flexible. Nucleic Acids Res 2006;34(Web Server issue):W451-4.
37. John B, Enright AJ, Aravin A et al. Human MicroRNA targets. PLoS Biol 2004;2:e363.
38. SkinnerMK, Guerrero-Bosagna C, HaqueMM. Environmentally induced epigenetic transgenerational inheritance of sperm epimutations promote genetic mutations. Epigenetics 2015; 10:762-71.
39. Skinner MK, Manikkam M, Haque MM, et al. Epigenetic transgenerational inheritance of somatic transcriptomes and epigenetic control regions. Genome Biol 2012;13:R91.
40. Skinner MK, Anway, MD, Savenkova MI et al. Transgenerational epigenetic programming of the brain transcriptome and anxiety behavior. PLoS One 2008;3:e3745.
41. Gillette R, Miller-Crews I, Skinner MK et al. Distinct actions of ancestral vinclozolin and juvenile stress on neural gene expression in the male rat. Front Genet 2015;6:56.
42. Crews D, Gillette R, Scarpino SV et al. Epigenetic transgenerational inheritance of altered stress responses. Proc Natl Acad Sci USA 2012;109:9143-8.
43. Blanco S, Dietmann S, Flores JV et al. Aberrant methylation of tRNAs links cellular stress to neuro-developmental disorders. EMBO J 2014;33:2020-39.
44. Hussain S, Tuorto F, Menon S et al. The mouse cytosine-5 RNA methyltransferase NSun2 is a component of the chromatoid body and required for testis differentiation. Mol Cell Biol 2013;33:1561-70.
45. Schaefer M, Pollex T, Hanna K et al. RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev 2010;24:1590-5.
46. Tuorto F, Liebers R, Musch T et al. RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol 2012;19:900-5.
47. Hussain S, Sajini AA, Blanco S et al. NSun2-mediated cytosine-5methylation of vault noncoding RNA determines its processing into regulatory small RNAs. Cell Rep 2013;4:255-61.
48. Kiani J, Rassoulzadegan M. A load of small RNAs in the sperm-how many bits of hereditary information? Cell Res 2013;23:18-9.
49. Kozomara A, Griffiths-Jones S. miRBase: Annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res 2014;42(Database issue):D68-73.
50. Chan PP, Lowe TM. GtRNAdb: A database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res 2009;37(Database issue):D93-7.
51. Sai Lakshmi S, Agrawal S. piRNABank: A web resource on classified and clustered Piwi-interacting RNAs. Nucleic Acids Res 2008;36(Database issue):D173-7.
52. Ortogero N, Hennig GW, Langille C et al. Computer-assisted annotation of murine Sertoli cell small RNA transcriptome. Biol Reprod 2013;88:3.
53. Song R, Hennig GW, Wu Q et al. Male germ cells express abundant endogenous siRNAs. Proc Natl Acad Sci USA 2011; 108:13159-64.
54. Langmead B, Trapnell C, Pop M et al. Ultrafast and memoryefficient alignment of short DNA sequences to the human genome. Genome Biol 2009;10:R25.
55. Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol 2014;15:550.
56. Kumar P, Mudunuri SB, Anaya J et al. tRFdb: A database for transfer RNA fragments. Nucleic Acids Res 2015;43(Database issue):D141-5.
57. Dennis G Jr, Sherman BT, Hosack DA et al. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003;4:P3.