-
1
-
-
84994666208
-
Text Mining for Precision Medicine: Bringing Structure to EHRs and Biomedical Literature to Understand Genes and Health
-
[FREE Full text] [doi] [Medline: 27807747]
-
Simmons M, Singhal A, Lu Z. Text Mining for Precision Medicine: Bringing Structure to EHRs and Biomedical Literature to Understand Genes and Health. Adv Exp Med Biol 2016; 939:139-166 [FREE Full text] [doi: 10.1007/978-981-10-1503-8_7] [Medline: 27807747]
-
(2016)
Adv Exp Med Biol
, vol.939
, pp. 139-166
-
-
Simmons, M1
Singhal, A2
Lu, Z.3
-
2
-
-
85021315034
-
Mining Electronic Health Records to Guide and Support Clinical Decision Support Systems
-
PA, USA: IGI Global
-
Jonnagaddala H. Mining Electronic Health Records to Guide and Support Clinical Decision Support Systems. In: Healthcare Ethics and Training: Concepts, Methodologies, Tools, and Applications. PA, USA: IGI Global; 2017:184-201.
-
(2017)
Healthcare Ethics and Training: Concepts, Methodologies, Tools, and Applications
, pp. 184-201
-
-
Jonnagaddala, H.1
-
3
-
-
85021117594
-
Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review
-
Dec; [doi] [Medline: 28643174]
-
Luo Y, Thompson WK, Herr TM, Zeng Z, Berendsen MA, Jonnalagadda SR, et al. Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review. Drug Saf 2017 Dec; 40(11):1075-1089. [doi: 10.1007/s40264-017-0558-6] [Medline: 28643174]
-
(2017)
Drug Saf
, vol.40
, Issue.11
, pp. 1075-1089
-
-
Luo, Y1
Thompson, WK2
Herr, TM3
Zeng, Z4
Berendsen, MA5
Jonnalagadda, SR6
-
4
-
-
84960108978
-
Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery
-
Jan; [FREE Full text] [doi] [Medline: 26420781]
-
Gonzalez GH, Tahsin T, Goodale BC, Greene AC, Greene CS. Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Brief Bioinform 2016 Jan; 17(1):33-42 [FREE Full text] [doi: 10.1093/bib/bbv087] [Medline: 26420781]
-
(2016)
Brief Bioinform
, vol.17
, Issue.1
, pp. 33-42
-
-
Gonzalez, GH1
Tahsin, T2
Goodale, BC3
Greene, AC4
Greene, CS.5
-
5
-
-
84939221315
-
DisGeNET: A discovery platform for the dynamical exploration of human diseases and their genes
-
[FREE Full text] [doi] [Medline: 25877637]
-
Piñero J, Queralt-Rosinach N, Bravo A, Deu-Pons J, Bauer-Mehren A, Baron M, et al. DisGeNET: A discovery platform for the dynamical exploration of human diseases and their genes. Database (Oxford) 2015; 2015:bav028 [FREE Full text] [doi: 10.1093/database/bav028] [Medline: 25877637]
-
(2015)
Database (Oxford)
, vol.2015
, pp. bav028
-
-
Piñero, J1
Queralt-Rosinach, N2
Bravo, A3
Deu-Pons, J4
Bauer-Mehren, A5
Baron, M6
-
6
-
-
85102355579
-
-
SNOMED International. [accessed 2019-04-18] [WebCite Cache ID 77jn1Od9U]
-
SNOMED International. URL:http://www.snomed.org/snomed-ct/five-step-briefing [accessed 2019-04-18] [WebCite Cache ID 77jn1Od9U]
-
-
-
-
7
-
-
85015982066
-
The Human Phenotype Ontology in 2017
-
Dec 04; [FREE Full text] [doi] [Medline: 27899602]
-
Köhler S, Vasilevsky NA, Engelstad M, Foster E, McMurry J, Aymé S, et al. The Human Phenotype Ontology in 2017. Nucleic Acids Res 2017 Dec 04; 45(D1):D865-D876 [FREE Full text] [doi: 10.1093/nar/gkw1039] [Medline: 27899602]
-
(2017)
Nucleic Acids Res
, vol.45
, Issue.D1
, pp. D865-D876
-
-
Köhler, S1
Vasilevsky, NA2
Engelstad, M3
Foster, E4
McMurry, J5
Aymé, S6
-
8
-
-
84992365905
-
'IRDiRC Recognized Resources': A new mechanism to support scientists to conduct efficient, high-quality research for rare diseases
-
Dec; [FREE Full text] [doi] [Medline: 27782107]
-
Lochmüller H, Le Cam Y, Jonker AH, Lau LPI, Baynam G, Kaufmann P, et al. 'IRDiRC Recognized Resources': A new mechanism to support scientists to conduct efficient, high-quality research for rare diseases. Eur J Hum Genet 2017 Dec; 25(2):162-165 [FREE Full text] [doi: 10.1038/ejhg.2016.137] [Medline: 27782107]
-
(2017)
Eur J Hum Genet
, vol.25
, Issue.2
, pp. 162-165
-
-
Lochmüller, H1
Le Cam, Y2
Jonker, AH3
Lau, LPI4
Baynam, G5
Kaufmann, P6
-
9
-
-
84930526399
-
ClinGen. ClinGen-the Clinical Genome Resource
-
Dec 04; [FREE Full text] [doi] [Medline: 26014595]
-
Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ, ClinGen. ClinGen-the Clinical Genome Resource. N Engl J Med 2015 Dec 04; 372(23):2235-2242 [FREE Full text] [doi: 10.1056/NEJMsr1406261] [Medline: 26014595]
-
(2015)
N Engl J Med
, vol.372
, Issue.23
, pp. 2235-2242
-
-
Rehm, HL1
Berg, JS2
Brooks, LD3
Bustamante, CD4
Evans, JP5
Landrum, MJ6
-
10
-
-
77954506225
-
The open biomedical annotator
-
Mar 01; [FREE Full text] [Medline: 21347171]
-
Jonquet C, Shah NH, Musen MA. The open biomedical annotator. Summit Transl Bioinform 2009 Mar 01; 2009:56-60 [FREE Full text] [Medline: 21347171]
-
(2009)
Summit Transl Bioinform
, vol.2009
, pp. 56-60
-
-
Jonquet, C1
Shah, NH2
Musen, MA.3
-
11
-
-
84987596940
-
Automated semantic annotation of rare disease cases: A case study
-
[FREE Full text] [doi] [Medline: 24903515]
-
Taboada M, Rodríguez H, Martínez D, Pardo M, Sobrido MJ. Automated semantic annotation of rare disease cases: A case study. Database (Oxford) 2014; 2014 [FREE Full text] [doi: 10.1093/database/bau045] [Medline: 24903515]
-
(2014)
Database (Oxford)
, vol.2014
-
-
Taboada, M1
Rodríguez, H2
Martínez, D3
Pardo, M4
Sobrido, MJ.5
-
12
-
-
0035752429
-
Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program
-
[FREE Full text] [Medline: 11825149]
-
Aronson AR. Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program. Proc AMIA Symp 2001:17-21 [FREE Full text] [Medline: 11825149]
-
(2001)
Proc AMIA Symp
, pp. 17-21
-
-
Aronson, AR.1
-
13
-
-
78149490620
-
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): Architecture, component evaluation and applications
-
[FREE Full text] [doi] [Medline: 20819853]
-
Savova GK, Masanz JJ, Ogren PV, Zheng J, Sohn S, Kipper-Schuler KC, et al. Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): Architecture, component evaluation and applications. J Am Med Inform Assoc 2010; 17(5):507-513 [FREE Full text] [doi: 10.1136/jamia.2009.001560] [Medline: 20819853]
-
(2010)
J Am Med Inform Assoc
, vol.17
, Issue.5
, pp. 507-513
-
-
Savova, GK1
Masanz, JJ2
Ogren, PV3
Zheng, J4
Sohn, S5
Kipper-Schuler, KC6
-
14
-
-
84985041021
-
Automatic concept recognition using the human phenotype ontology reference and test suite corpora
-
[FREE Full text] [doi] [Medline: 25725061]
-
Groza T, Köhler S, Doelken S, Collier N, Oellrich A, Smedley D, et al. Automatic concept recognition using the human phenotype ontology reference and test suite corpora. Database (Oxford) 2015; 2015 [FREE Full text] [doi: 10.1093/database/bav005] [Medline: 25725061]
-
(2015)
Database (Oxford)
, vol.2015
-
-
Groza, T1
Köhler, S2
Doelken, S3
Collier, N4
Oellrich, A5
Smedley, D6
-
15
-
-
85041271039
-
Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules
-
[FREE Full text] [doi] [Medline: 29250549]
-
Lobo M, Lamurias A, Couto FM. Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules. Biomed Res Int 2017; 2017:8565739 [FREE Full text] [doi: 10.1155/2017/8565739] [Medline: 29250549]
-
(2017)
Biomed Res Int
, vol.2017
, pp. 8565739
-
-
Lobo, M1
Lamurias, A2
Couto, FM.3
-
16
-
-
84880508099
-
PhenoTips: Patient phenotyping software for clinical and research use
-
Aug; [doi] [Medline: 23636887]
-
Girdea M, Dumitriu S, Fiume M, Bowdin S, Boycott KM, Chénier S, et al. PhenoTips: Patient phenotyping software for clinical and research use. Hum Mutat 2013 Aug; 34(8):1057-1065. [doi: 10.1002/humu.22347] [Medline: 23636887]
-
(2013)
Hum Mutat
, vol.34
, Issue.8
, pp. 1057-1065
-
-
Girdea, M1
Dumitriu, S2
Fiume, M3
Bowdin, S4
Boycott, KM5
Chénier, S6
-
20
-
-
0031573117
-
Long Short-Term Memory
-
Nov; [doi]
-
Hochreiter S, Schmidhuber J. Long Short-Term Memory. Neural Computation 1997 Nov; 9(8):1735-1780. [doi: 10.1162/neco.1997.9.8.1735]
-
(1997)
Neural Computation
, vol.9
, Issue.8
, pp. 1735-1780
-
-
Hochreiter, S1
Schmidhuber, J.2
-
21
-
-
85102340261
-
-
Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data [accessed 2019-04-24]
-
Lafferty J, McCallum A, Pereira FCN. University of Pennsylvania ScholarlyCommons. 2001. Conditional Random Fields: Probabilistic Models for Segmenting and Labeling Sequence Data URL:https://repository.upenn.edu/cgi/viewcontent. cgi?article=1162 & context=cis_papers [accessed 2019-04-24]
-
(2001)
University of Pennsylvania ScholarlyCommons
-
-
Lafferty, J1
McCallum, A2
Pereira, FCN.3
-
23
-
-
84971287198
-
MIMIC-III, a freely accessible critical care database
-
May 24; [FREE Full text] [doi] [Medline: 27219127]
-
Johnson AEW, Pollard TJ, Shen L, Lehman LWH, Feng M, Ghassemi M, et al. MIMIC-III, a freely accessible critical care database. Sci Data 2016 May 24; 3:160035 [FREE Full text] [doi: 10.1038/sdata.2016.35] [Medline: 27219127]
-
(2016)
Sci Data
, vol.3
, pp. 160035
-
-
Johnson, AEW1
Pollard, TJ2
Shen, L3
Lehman, LWH4
Feng, M5
Ghassemi, M6
-
24
-
-
85028710555
-
PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models
-
Dec; [doi] [Medline: 28866570]
-
Glueck M, Naeini MP, Doshi-Velez F, Chevalier F, Khan A, Wigdor D, et al. PhenoLines: Phenotype Comparison Visualizations for Disease Subtyping via Topic Models. IEEE Trans Vis Comput Graph 2018 Dec; 24(1):371-381. [doi: 10.1109/TVCG.2017.2745118] [Medline: 28866570]
-
(2018)
IEEE Trans Vis Comput Graph
, vol.24
, Issue.1
, pp. 371-381
-
-
Glueck, M1
Naeini, MP2
Doshi-Velez, F3
Chevalier, F4
Khan, A5
Wigdor, D6
-
25
-
-
85024496142
-
Deep learning with word embeddings improves biomedical named entity recognition
-
Jul 15; [FREE Full text] [doi] [Medline: 28881963]
-
Habibi M, Weber L, Neves M, Wiegandt DL, Leser U. Deep learning with word embeddings improves biomedical named entity recognition. Bioinformatics 2017 Jul 15; 33(14):i37-i48 [FREE Full text] [doi: 10.1093/bioinformatics/btx228] [Medline: 28881963]
-
(2017)
Bioinformatics
, vol.33
, Issue.14
, pp. i37-i48
-
-
Habibi, M1
Weber, L2
Neves, M3
Wiegandt, DL4
Leser, U.5
-
27
-
-
84925408575
-
Large-Scale Object Classification Using Label Relation Graphs
-
NY, USA: Springer
-
Deng J, Ding N, Jia Y, Frome A, Murphy K, Bengio S, et al. Large-Scale Object Classification Using Label Relation Graphs. In: Computer Vision - ECCV 2014. NY, USA: Springer; 2014.
-
(2014)
Computer Vision - ECCV 2014
-
-
Deng, J1
Ding, N2
Jia, Y3
Frome, A4
Murphy, K5
Bengio, S6
-
33
-
-
85038368581
-
-
arXiv. [accessed 2019-04-24] [WebCite Cache ID 77sQBej4D]
-
Vaswani A, Shazeer N, Parmar N, Uszkoreit J, Jones L, Gomez AN, et al. arXiv. 2017. Attention Is All You Need URL:https://arxiv.org/abs/1706.03762 [accessed 2019-04-24] [WebCite Cache ID 77sQBej4D]
-
(2017)
Attention Is All You Need
-
-
Vaswani, A1
Shazeer, N2
Parmar, N3
Uszkoreit, J4
Jones, L5
Gomez, AN6
-
35
-
-
84941620184
-
-
arXiv. [accessed 2019-04-24] [WebCite Cache ID 77sQZGHQF]
-
Kingma DP, Ba J. arXiv. 2014. A Method for Stochastic Optimization URL:https://arxiv.org/abs/1412.6980 [accessed 2019-04-24] [WebCite Cache ID 77sQZGHQF]
-
(2014)
A Method for Stochastic Optimization
-
-
Kingma, DP1
Ba, J.2
-
36
-
-
84927693105
-
The National Institutes of Health undiagnosed diseases program
-
Dec; [FREE Full text] [doi] [Medline: 25313974]
-
Tifft CJ, Adams DR. The National Institutes of Health undiagnosed diseases program. Curr Opin Pediatr 2014 Dec; 26(6):626-633 [FREE Full text] [doi: 10.1097/MOP.0000000000000155] [Medline: 25313974]
-
(2014)
Curr Opin Pediatr
, vol.26
, Issue.6
, pp. 626-633
-
-
Tifft, CJ1
Adams, DR.2
-
37
-
-
0345863927
-
The Unified Medical Language System (UMLS): Integrating biomedical terminology
-
Jan 01; [FREE Full text] [doi] [Medline: 14681409]
-
Bodenreider O. The Unified Medical Language System (UMLS): Integrating biomedical terminology. Nucleic Acids Res 2004 Jan 01; 32(Database issue):D267-D270 [FREE Full text] [doi: 10.1093/nar/gkh061] [Medline: 14681409]
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.Database issue
, pp. D267-D270
-
-
Bodenreider, O.1
-
38
-
-
85102354146
-
-
[accessed 2019-04-24] [WebCite Cache ID 77sLcntjU]
-
GitHub. Neural CR URL:https://github.com/ccmbioinfo/NeuralCR [accessed 2019-04-24] [WebCite Cache ID 77sLcntjU]
-
GitHub. Neural CR
-
-
-
39
-
-
84965153327
-
Skip-thought vectors
-
December 07-12, Montreal, Canada
-
Kiros R, Zhu Y, Salakhutdinov R, Zemel RS, Torralba A, Urtasun R, et al. Skip-thought vectors. In: Advances in neural information processing systems. 2015 Presented at: Proceedings of the 28th International Conference on Neural Information Processing Systems Skip-Thought Vectors; December 07-12, 2015; Montreal, Canada p. 3302.
-
(2015)
Advances in neural information processing systems. 2015 Presented at: Proceedings of the 28th International Conference on Neural Information Processing Systems Skip-Thought Vectors
, pp. 3302
-
-
Kiros, R1
Zhu, Y2
Salakhutdinov, R3
Zemel, RS4
Torralba, A5
Urtasun, R6
|