-
1
-
-
85019065151
-
The human microbiota in health and disease
-
Wang, B., Yao, M., Lv, L., Ling, Z., Li, L., The human microbiota in health and disease. Engineering 3 (2017), 71–82.
-
(2017)
Engineering
, vol.3
, pp. 71-82
-
-
Wang, B.1
Yao, M.2
Lv, L.3
Ling, Z.4
Li, L.5
-
2
-
-
85036536730
-
The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota
-
Milani, C., Duranti, S., Bottacini, F., Casey, E., Turroni, F., Mahony, J., Belzer, C., Delgado Palacio, S., Montes, S.A., Mancabelli, L., et al. The first microbial colonizers of the human gut: composition, activities, and health implications of the infant gut microbiota. Microbiol Mol Biol Rev, 81, 2017, 10.1128/MMBR.00036-17.
-
(2017)
Microbiol Mol Biol Rev
, vol.81
-
-
Milani, C.1
Duranti, S.2
Bottacini, F.3
Casey, E.4
Turroni, F.5
Mahony, J.6
Belzer, C.7
Delgado Palacio, S.8
Montes, S.A.9
Mancabelli, L.10
-
3
-
-
84968918909
-
Population-level analysis of gut microbiome variation
-
Falony, G., Joossens, M., Vieira-Silva, S., Wang, J., Darzi, Y., Faust, K., Kurilshikov, A., Bonder, M.J., Valles-Colomer, M., Vandeputte, D., et al. Population-level analysis of gut microbiome variation. Science 352 (2016), 560–564.
-
(2016)
Science
, vol.352
, pp. 560-564
-
-
Falony, G.1
Joossens, M.2
Vieira-Silva, S.3
Wang, J.4
Darzi, Y.5
Faust, K.6
Kurilshikov, A.7
Bonder, M.J.8
Valles-Colomer, M.9
Vandeputte, D.10
-
4
-
-
84946919159
-
Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
-
Conceição-Neto, N., Zeller, M., Lefrère, H., De Bruyn, P., Beller, L., Deboutte, W., Yinda, C.K., Lavigne, R., Maes, P., Van Ranst, M., et al. Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis. Sci Rep, 5, 2015.
-
(2015)
Sci Rep
, vol.5
-
-
Conceição-Neto, N.1
Zeller, M.2
Lefrère, H.3
De Bruyn, P.4
Beller, L.5
Deboutte, W.6
Yinda, C.K.7
Lavigne, R.8
Maes, P.9
Van Ranst, M.10
-
5
-
-
84946740229
-
The human gut virome: a multifaceted majority
-
Ogilvie, L.A., Jones, B.V., The human gut virome: a multifaceted majority. Front Microbiol, 6, 2015, 918.
-
(2015)
Front Microbiol
, vol.6
, pp. 918
-
-
Ogilvie, L.A.1
Jones, B.V.2
-
6
-
-
0038386690
-
Global screening for human viral pathogens
-
Anderson, N.G., Gerin, J.L., Anderson, N.L., Global screening for human viral pathogens. Emerg Infect Dis 9 (2003), 768–774.
-
(2003)
Emerg Infect Dis
, vol.9
, pp. 768-774
-
-
Anderson, N.G.1
Gerin, J.L.2
Anderson, N.L.3
-
7
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart, M., Hewson, I., Felts, B., Mahaffy, J.M., Nulton, J., Salamon, P., Rohwer, F., Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol 185 (2003), 6220–6223.
-
(2003)
J Bacteriol
, vol.185
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
Salamon, P.6
Rohwer, F.7
-
8
-
-
31144459030
-
RNA viral community in human feces: prevalence of plant pathogenic viruses
-
Zhang, T., Breitbart, M., Lee, W.H., Run, J.-Q., Wei, C.L., Soh, S.W.L., Hibberd, M.L., Liu, E.T., Rohwer, F., Ruan, Y., RNA viral community in human feces: prevalence of plant pathogenic viruses. PLoS Biol, 4, 2005, e3.
-
(2005)
PLoS Biol
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.H.3
Run, J.-Q.4
Wei, C.L.5
Soh, S.W.L.6
Hibberd, M.L.7
Liu, E.T.8
Rohwer, F.9
Ruan, Y.10
-
9
-
-
84920929686
-
An enteric virus can replace the beneficial function of commensal bacteria
-
Kernbauer, E., Ding, Y., Cadwell, K., An enteric virus can replace the beneficial function of commensal bacteria. Nature 516 (2014), 94–98.
-
(2014)
Nature
, vol.516
, pp. 94-98
-
-
Kernbauer, E.1
Ding, Y.2
Cadwell, K.3
-
10
-
-
84942883364
-
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
-
Reyes, A., Blanton, L.V., Cao, S., Zhao, G., Manary, M., Trehan, I., Smith, M.I., Wang, D., Virgin, H.W., Rohwer, F., et al. Gut DNA viromes of Malawian twins discordant for severe acute malnutrition. Proc Natl Acad Sci U S A 112 (2015), 11941–11946.
-
(2015)
Proc Natl Acad Sci U S A
, vol.112
, pp. 11941-11946
-
-
Reyes, A.1
Blanton, L.V.2
Cao, S.3
Zhao, G.4
Manary, M.5
Trehan, I.6
Smith, M.I.7
Wang, D.8
Virgin, H.W.9
Rohwer, F.10
-
11
-
-
85030324291
-
Viruses with circular single-stranded DNA genomes are everywhere!
-
Shulman, L.M., Davidson, I., Viruses with circular single-stranded DNA genomes are everywhere!. Annu Rev Virol 4 (2017), 159–180.
-
(2017)
Annu Rev Virol
, vol.4
, pp. 159-180
-
-
Shulman, L.M.1
Davidson, I.2
-
12
-
-
80053528043
-
The human gut virome: inter-individual variation and dynamic response to diet
-
Minot, S., Sinha, R., Chen, J., Li, H., Keilbaugh, S.A., Wu, G.D., Lewis, J.D., Bushman, F.D., The human gut virome: inter-individual variation and dynamic response to diet. Genome Res 21 (2011), 1616–1625.
-
(2011)
Genome Res
, vol.21
, pp. 1616-1625
-
-
Minot, S.1
Sinha, R.2
Chen, J.3
Li, H.4
Keilbaugh, S.A.5
Wu, G.D.6
Lewis, J.D.7
Bushman, F.D.8
-
13
-
-
84880652104
-
Rapid evolution of the human gut virome
-
Minot, S., Bryson, A., Chehoud, C., Wu, G.D., Lewis, J.D., Bushman, F.D., Rapid evolution of the human gut virome. Proc Natl Acad Sci U S A 110 (2013), 12450–12455.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 12450-12455
-
-
Minot, S.1
Bryson, A.2
Chehoud, C.3
Wu, G.D.4
Lewis, J.D.5
Bushman, F.D.6
-
14
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes, A., Haynes, M., Hanson, N., Angly, F.E., Heath, A.C., Rohwer, F., Gordon, J.I., Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466 (2010), 334–338.
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, F.E.4
Heath, A.C.5
Rohwer, F.6
Gordon, J.I.7
-
15
-
-
84943657766
-
Early life dynamics of the human gut virome and bacterial microbiome in infants
-
Lim, E.S., Zhou, Y., Zhao, G., Bauer, I.K., Droit, L., Ndao, I.M., Warner, B.B., Tarr, P.I., Wang, D., Holtz, L.R., Early life dynamics of the human gut virome and bacterial microbiome in infants. Nat Med 21 (2015), 1228–1234.
-
(2015)
Nat Med
, vol.21
, pp. 1228-1234
-
-
Lim, E.S.1
Zhou, Y.2
Zhao, G.3
Bauer, I.K.4
Droit, L.5
Ndao, I.M.6
Warner, B.B.7
Tarr, P.I.8
Wang, D.9
Holtz, L.R.10
-
16
-
-
84962090717
-
The significance of mutualistic phages for bacterial ecology and evolution
-
Obeng, N., Pratama, A.A., Elsas, J.D., van, The significance of mutualistic phages for bacterial ecology and evolution. Trends Microbiol 24 (2016), 440–449.
-
(2016)
Trends Microbiol
, vol.24
, pp. 440-449
-
-
Obeng, N.1
Pratama, A.A.2
Elsas, J.D.3
van4
-
17
-
-
77957945540
-
Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell
-
Rakhuba, D.V., Kolomiets, E.I., Dey, E.S., Novik, G.I., Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell. Polish J Microbiol 59 (2010), 145–155.
-
(2010)
Polish J Microbiol
, vol.59
, pp. 145-155
-
-
Rakhuba, D.V.1
Kolomiets, E.I.2
Dey, E.S.3
Novik, G.I.4
-
18
-
-
85061025040
-
Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins
-
The researchers investigated the gut virome in adult twins and found that it was very diverse and individual but still they were able to identify many phages as part of a ‘core virome’. The virome composition seemed more similar between twins compared to unrelated individuals. This finding stands in contrast with what is previously found and could possibly be due to the fact that in this paper they used specialized bioinformatic tools (HMMs) to reduce the amount of unannotated sequences.
-
Moreno-Gallego, J.L., Chou, S.-P., Di Rienzi, S.C., Goodrich, J.K., Spector, T.D., Bell, J.T., Youngblut, N.D., Hewson, I., Reyes, A., Ley, R.E., Virome diversity correlates with intestinal microbiome diversity in adult monozygotic twins. Cell Host Microbe 25 (2019), 261–272.e5 The researchers investigated the gut virome in adult twins and found that it was very diverse and individual but still they were able to identify many phages as part of a ‘core virome’. The virome composition seemed more similar between twins compared to unrelated individuals. This finding stands in contrast with what is previously found and could possibly be due to the fact that in this paper they used specialized bioinformatic tools (HMMs) to reduce the amount of unannotated sequences.
-
(2019)
Cell Host Microbe
, vol.25
, pp. 261-272.e5
-
-
Moreno-Gallego, J.L.1
Chou, S.-P.2
Di Rienzi, S.C.3
Goodrich, J.K.4
Spector, T.D.5
Bell, J.T.6
Youngblut, N.D.7
Hewson, I.8
Reyes, A.9
Ley, R.E.10
-
19
-
-
84905041075
-
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
-
Dutilh, B.E., Cassman, N., McNair, K., Sanchez, S.E., Silva, G.G.Z., Boling, L., Barr, J.J., Speth, D.R., Seguritan, V., Aziz, R.K., et al. A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes. Nat Commun, 5, 2014, 4498.
-
(2014)
Nat Commun
, vol.5
-
-
Dutilh, B.E.1
Cassman, N.2
McNair, K.3
Sanchez, S.E.4
Silva, G.G.Z.5
Boling, L.6
Barr, J.J.7
Speth, D.R.8
Seguritan, V.9
Aziz, R.K.10
-
20
-
-
85033594015
-
Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut
-
The researchers discovered a new family of CrAss-like phages that are very abundant members of the human gut viromes. This study highlights the fact that still so little is known about the gut virome.
-
Yutin, N., Makarova, K.S., Gussow, A.B., Krupovic, M., Segall, A., Edwards, R.A., Koonin, E.V., Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut. Nat Microbiol 3 (2018), 38–46 The researchers discovered a new family of CrAss-like phages that are very abundant members of the human gut viromes. This study highlights the fact that still so little is known about the gut virome.
-
(2018)
Nat Microbiol
, vol.3
, pp. 38-46
-
-
Yutin, N.1
Makarova, K.S.2
Gussow, A.B.3
Krupovic, M.4
Segall, A.5
Edwards, R.A.6
Koonin, E.V.7
-
21
-
-
85056598186
-
ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis
-
Shkoporov, A.N., Khokhlova, E.V., Fitzgerald, C.B., Stockdale, S.R., Draper, L.A., Ross, R.P., Hill, C., ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis. Nat Commun, 9, 2018, 4781.
-
(2018)
Nat Commun
, vol.9
-
-
Shkoporov, A.N.1
Khokhlova, E.V.2
Fitzgerald, C.B.3
Stockdale, S.R.4
Draper, L.A.5
Ross, R.P.6
Hill, C.7
-
22
-
-
85046684250
-
Viromes of one year old infants reveal the impact of birth mode on microbiome diversity
-
Their findings indicate that birth mode is strongly correlated with virome diversity but not with bacteriome diversity.
-
McCann, A., Ryan, F.J., Stockdale, S.R., Dalmasso, M., Blake, T., Ryan, C.A., Stanton, C., Mills, S., Ross, P.R., Hill, C., Viromes of one year old infants reveal the impact of birth mode on microbiome diversity. PeerJ, 6, 2018, e4694 Their findings indicate that birth mode is strongly correlated with virome diversity but not with bacteriome diversity.
-
(2018)
PeerJ
, vol.6
-
-
McCann, A.1
Ryan, F.J.2
Stockdale, S.R.3
Dalmasso, M.4
Blake, T.5
Ryan, C.A.6
Stanton, C.7
Mills, S.8
Ross, P.R.9
Hill, C.10
-
23
-
-
85023186212
-
The human microbiome
-
Blum, H.E., The human microbiome. Adv Med Sci 62 (2017), 414–420.
-
(2017)
Adv Med Sci
, vol.62
, pp. 414-420
-
-
Blum, H.E.1
-
24
-
-
77953904042
-
Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine
-
Cadwell, K., Patel, K.K., Maloney, N.S., Liu, T.-C., Ng, A.C.Y., Storer, C.E., Head, R.D., Xavier, R., Stappenbeck, T.S., Virgin, H.W., Virus-plus-susceptibility gene interaction determines Crohn's disease gene Atg16L1 phenotypes in intestine. Cell 141 (2010), 1135–1145.
-
(2010)
Cell
, vol.141
, pp. 1135-1145
-
-
Cadwell, K.1
Patel, K.K.2
Maloney, N.S.3
Liu, T.-C.4
Ng, A.C.Y.5
Storer, C.E.6
Head, R.D.7
Xavier, R.8
Stappenbeck, T.S.9
Virgin, H.W.10
-
25
-
-
84922245262
-
Disease-specific alterations in the enteric virome in inflammatory bowel disease
-
Norman, J.M., Handley, S.A., Baldridge, M.T., Droit, L., Liu, C.Y., Keller, B.C., Kambal, A., Monaco, C.L., Zhao, G., Fleshner, P., et al. Disease-specific alterations in the enteric virome in inflammatory bowel disease. Cell 160 (2015), 447–460.
-
(2015)
Cell
, vol.160
, pp. 447-460
-
-
Norman, J.M.1
Handley, S.A.2
Baldridge, M.T.3
Droit, L.4
Liu, C.Y.5
Keller, B.C.6
Kambal, A.7
Monaco, C.L.8
Zhao, G.9
Fleshner, P.10
-
26
-
-
85026472565
-
Looking into enteric virome in patients with IBD
-
Lopes, S., Andrade, P., Conde, S., Liberal, R., Dias, C.C., Fernandes, S., Pinheiro, J., Simões, J.S., Carneiro, F., Magro, F., et al. Looking into enteric virome in patients with IBD. Inflamm Bowel Dis 23 (2017), 1278–1284.
-
(2017)
Inflamm Bowel Dis
, vol.23
, pp. 1278-1284
-
-
Lopes, S.1
Andrade, P.2
Conde, S.3
Liberal, R.4
Dias, C.C.5
Fernandes, S.6
Pinheiro, J.7
Simões, J.S.8
Carneiro, F.9
Magro, F.10
-
27
-
-
85043304296
-
Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC
-
Conceição-Neto, N., Deboutte, W., Dierckx, T., Machiels, K., Wang, J., Yinda, K.C., Maes, P., Van Ranst, M., Joossens, M., Raes, J., et al. Low eukaryotic viral richness is associated with faecal microbiota transplantation success in patients with UC. Gut 67 (2018), 1558–1559.
-
(2018)
Gut
, vol.67
, pp. 1558-1559
-
-
Conceição-Neto, N.1
Deboutte, W.2
Dierckx, T.3
Machiels, K.4
Wang, J.5
Yinda, K.C.6
Maes, P.7
Van Ranst, M.8
Joossens, M.9
Raes, J.10
-
28
-
-
85025599680
-
Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children
-
Zhao, G., Vatanen, T., Droit, L., Park, A., Kostic, A.D., Poon, T.W., Vlamakis, H., Siljander, H., Härkönen, T., Hämäläinen, A.-M., et al. Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children. Proc Natl Acad Sci U S A 114 (2017), E6166–E6175.
-
(2017)
Proc Natl Acad Sci U S A
, vol.114
, pp. E6166-E6175
-
-
Zhao, G.1
Vatanen, T.2
Droit, L.3
Park, A.4
Kostic, A.D.5
Poon, T.W.6
Vlamakis, H.7
Siljander, H.8
Härkönen, T.9
Hämäläinen, A.-M.10
-
29
-
-
85056802026
-
Diagnostic potential and interactive dynamics of the colorectal cancer virome
-
Hannigan, G.D., Duhaime, M.B., Ruffin, M.T., Koumpouras, C.C., Schloss, P.D., Schloss, P.D., Diagnostic potential and interactive dynamics of the colorectal cancer virome. mBio, 9, 2018.
-
(2018)
mBio
, vol.9
-
-
Hannigan, G.D.1
Duhaime, M.B.2
Ruffin, M.T.3
Koumpouras, C.C.4
Schloss, P.D.5
Schloss, P.D.6
-
30
-
-
84954499068
-
The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin
-
Phan, T.G., da Costa, A.C., Del Valle Mendoza, J., Bucardo-Rivera, F., Nordgren, J., O'Ryan, M., Deng, X., Delwart, E., The fecal virome of South and Central American children with diarrhea includes small circular DNA viral genomes of unknown origin. Arch Virol 161 (2016), 959–966.
-
(2016)
Arch Virol
, vol.161
, pp. 959-966
-
-
Phan, T.G.1
da Costa, A.C.2
Del Valle Mendoza, J.3
Bucardo-Rivera, F.4
Nordgren, J.5
O'Ryan, M.6
Deng, X.7
Delwart, E.8
-
31
-
-
84961777823
-
Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome
-
Monaco, C.L., Gootenberg, D.B., Zhao, G., Handley, S.A., Ghebremichael, M.S., Lim, E.S., Lankowski, A., Baldridge, M.T., Wilen, C.B., Flagg, M., et al. Altered virome and bacterial microbiome in human immunodeficiency virus-associated acquired immunodeficiency syndrome. Cell Host Microbe 19 (2016), 311–322.
-
(2016)
Cell Host Microbe
, vol.19
, pp. 311-322
-
-
Monaco, C.L.1
Gootenberg, D.B.2
Zhao, G.3
Handley, S.A.4
Ghebremichael, M.S.5
Lim, E.S.6
Lankowski, A.7
Baldridge, M.T.8
Wilen, C.B.9
Flagg, M.10
-
32
-
-
49349118069
-
Viral diversity and dynamics in an infant gut
-
Breitbart, M., Haynes, M., Kelley, S., Angly, F., Edwards, R.A., Felts, B., Mahaffy, J.M., Mueller, J., Nulton, J., Rayhawk, S., et al. Viral diversity and dynamics in an infant gut. Res Microbiol 159 (2008), 367–373.
-
(2008)
Res Microbiol
, vol.159
, pp. 367-373
-
-
Breitbart, M.1
Haynes, M.2
Kelley, S.3
Angly, F.4
Edwards, R.A.5
Felts, B.6
Mahaffy, J.M.7
Mueller, J.8
Nulton, J.9
Rayhawk, S.10
-
33
-
-
84867511679
-
Nearly constant shedding of diverse enteric viruses by two healthy infants
-
Kapusinszky, B., Minor, P., Delwart, E., Nearly constant shedding of diverse enteric viruses by two healthy infants. J Clin Microbiol 50 (2012), 3427–3434.
-
(2012)
J Clin Microbiol
, vol.50
, pp. 3427-3434
-
-
Kapusinszky, B.1
Minor, P.2
Delwart, E.3
-
34
-
-
83055177100
-
Diversity and abundance of single-stranded DNA viruses in human feces
-
Kim, M.-S., Park, E.-J., Roh, S.W., Bae, J.-W., Diversity and abundance of single-stranded DNA viruses in human feces. Appl Environ Microbiol 77 (2011), 8062–8070.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 8062-8070
-
-
Kim, M.-S.1
Park, E.-J.2
Roh, S.W.3
Bae, J.-W.4
-
35
-
-
84918533502
-
Characterization of virus-like particles associated with the human faecal and caecal microbiota
-
Hoyles, L., McCartney, A.L., Neve, H., Gibson, G.R., Sanderson, J.D., Heller, K.J., van Sinderen, D., Characterization of virus-like particles associated with the human faecal and caecal microbiota. Res Microbiol 165 (2014), 803–812.
-
(2014)
Res Microbiol
, vol.165
, pp. 803-812
-
-
Hoyles, L.1
McCartney, A.L.2
Neve, H.3
Gibson, G.R.4
Sanderson, J.D.5
Heller, K.J.6
van Sinderen, D.7
-
36
-
-
85067644021
-
Viral Abundance in Aquatic Systems: A Comparison Between Marine and Fresh Waters
-
Maranger, R., Bird, D.F., Viral Abundance in Aquatic Systems: A Comparison Between Marine and Fresh Waters. 1995.
-
(1995)
-
-
Maranger, R.1
Bird, D.F.2
-
37
-
-
85018237311
-
Re-examination of the relationship between marine virus and microbial cell abundances
-
Wigington, C.H., Sonderegger, D., Brussaard, C.P.D., Buchan, A., Finke, J.F., Fuhrman, J.A., Lennon, J.T., Middelboe, M., Suttle, C.A., Stock, C., et al. Re-examination of the relationship between marine virus and microbial cell abundances. Nat Microbiol, 1, 2016, 15024.
-
(2016)
Nat Microbiol
, vol.1
-
-
Wigington, C.H.1
Sonderegger, D.2
Brussaard, C.P.D.3
Buchan, A.4
Finke, J.F.5
Fuhrman, J.A.6
Lennon, J.T.7
Middelboe, M.8
Suttle, C.A.9
Stock, C.10
-
38
-
-
85040718793
-
Essentials of Medical Laboratory Practice
-
F.A. Davis Company
-
Lieseke, C.L., Zeibig, E.A., Essentials of Medical Laboratory Practice. 2012, F.A. Davis Company.
-
(2012)
-
-
Lieseke, C.L.1
Zeibig, E.A.2
-
39
-
-
84865169911
-
Going viral: next-generation sequencing applied to phage populations in the human gut
-
Reyes, A., Semenkovich, N.P., Whiteson, K., Rohwer, F., Gordon, J.I., Going viral: next-generation sequencing applied to phage populations in the human gut. Nat Rev Microbiol 10 (2012), 607–617.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 607-617
-
-
Reyes, A.1
Semenkovich, N.P.2
Whiteson, K.3
Rohwer, F.4
Gordon, J.I.5
-
40
-
-
85029670713
-
Gut microbiota and IBD: causation or correlation?
-
Ni, J., Wu, G.D., Albenberg, L., Tomov, V.T., Gut microbiota and IBD: causation or correlation?. Nat Rev Gastroenterol Hepatol, 14, 2017, 573.
-
(2017)
Nat Rev Gastroenterol Hepatol
, vol.14
, pp. 573
-
-
Ni, J.1
Wu, G.D.2
Albenberg, L.3
Tomov, V.T.4
-
41
-
-
84879515171
-
Bacteriophage adhering to mucus provide a non-host-derived immunity
-
Barr, J.J., Auro, R., Furlan, M., Whiteson, K.L., Erb, M.L., Pogliano, J., Stotland, A., Wolkowicz, R., Cutting, A.S., Doran, K.S., et al. Bacteriophage adhering to mucus provide a non-host-derived immunity. Proc Natl Acad Sci U S A 110 (2013), 10771–10776.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 10771-10776
-
-
Barr, J.J.1
Auro, R.2
Furlan, M.3
Whiteson, K.L.4
Erb, M.L.5
Pogliano, J.6
Stotland, A.7
Wolkowicz, R.8
Cutting, A.S.9
Doran, K.S.10
-
42
-
-
84855245603
-
Antibiotics in feed induce prophages in swine fecal microbiomes
-
Allen, H.K., Looft, T., Bayles, D.O., Humphrey, S., Levine, U.Y., Alt, D., Stanton, T.B., Antibiotics in feed induce prophages in swine fecal microbiomes. mBio, 2, 2011.
-
(2011)
mBio
, vol.2
-
-
Allen, H.K.1
Looft, T.2
Bayles, D.O.3
Humphrey, S.4
Levine, U.Y.5
Alt, D.6
Stanton, T.B.7
-
43
-
-
84943258596
-
Effects of long term antibiotic therapy on human oral and fecal viromes
-
Abeles, S.R., Ly, M., Santiago-Rodriguez, T.M., Pride, D.T., Effects of long term antibiotic therapy on human oral and fecal viromes. PLoS One, 10, 2015, e0134941.
-
(2015)
PLoS One
, vol.10
-
-
Abeles, S.R.1
Ly, M.2
Santiago-Rodriguez, T.M.3
Pride, D.T.4
-
44
-
-
84954512213
-
Antibiotic selection pressure determination through sequence-based metagenomics
-
Willmann, M., El-Hadidi, M., Huson, D.H., Schütz, M., Weidenmaier, C., Autenrieth, I.B., Peter, S., Antibiotic selection pressure determination through sequence-based metagenomics. Antimicrob Agents Chemother 59 (2015), 7335–7345.
-
(2015)
Antimicrob Agents Chemother
, vol.59
, pp. 7335-7345
-
-
Willmann, M.1
El-Hadidi, M.2
Huson, D.H.3
Schütz, M.4
Weidenmaier, C.5
Autenrieth, I.B.6
Peter, S.7
-
45
-
-
85044154294
-
Dynamics of the human gut phageome during antibiotic treatment
-
This longitudinal virome study investigated the effect of antibiotics on phage composition and found an increase in abundance of antibiotic resistant genes.
-
Górska, A., Peter, S., Willmann, M., Autenrieth, I., Schlaberg, R., Huson, D., Dynamics of the human gut phageome during antibiotic treatment. Comput Biol Chem 74 (2018), 420–427 This longitudinal virome study investigated the effect of antibiotics on phage composition and found an increase in abundance of antibiotic resistant genes.
-
(2018)
Comput Biol Chem
, vol.74
, pp. 420-427
-
-
Górska, A.1
Peter, S.2
Willmann, M.3
Autenrieth, I.4
Schlaberg, R.5
Huson, D.6
-
46
-
-
85030318437
-
Viral communities of the human gut: metagenomic analysis of composition and dynamics
-
Aggarwala, V., Liang, G., Bushman, F.D., Viral communities of the human gut: metagenomic analysis of composition and dynamics. Mob DNA, 8, 2017, 12.
-
(2017)
Mob DNA
, vol.8
, pp. 12
-
-
Aggarwala, V.1
Liang, G.2
Bushman, F.D.3
-
47
-
-
84930658013
-
VirSorter: mining viral signal from microbial genomic data
-
Roux, S., Enault, F., Hurwitz, B.L., Sullivan, M.B., VirSorter: mining viral signal from microbial genomic data. PeerJ, 3, 2015, e985.
-
(2015)
PeerJ
, vol.3
-
-
Roux, S.1
Enault, F.2
Hurwitz, B.L.3
Sullivan, M.B.4
-
48
-
-
85052907786
-
Reproducible protocols for metagenomic analysis of human faecal phageomes
-
Shkoporov, A.N., Ryan, F.J., Draper, L.A., Forde, A., Stockdale, S.R., Daly, K.M., McDonnell, S.A., Nolan, J.A., Sutton, T.D.S., Dalmasso, M., et al. Reproducible protocols for metagenomic analysis of human faecal phageomes. Microbiome, 6, 2018, 68.
-
(2018)
Microbiome
, vol.6
, pp. 68
-
-
Shkoporov, A.N.1
Ryan, F.J.2
Draper, L.A.3
Forde, A.4
Stockdale, S.R.5
Daly, K.M.6
McDonnell, S.A.7
Nolan, J.A.8
Sutton, T.D.S.9
Dalmasso, M.10
-
49
-
-
85060870452
-
Bacteriophages of the human gut: the “known unknown” of the microbiome
-
Shkoporov, A.N., Hill, C., Bacteriophages of the human gut: the “known unknown” of the microbiome. Cell Host Microbe 25 (2019), 195–209.
-
(2019)
Cell Host Microbe
, vol.25
, pp. 195-209
-
-
Shkoporov, A.N.1
Hill, C.2
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