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Volumn , Issue , 2008, Pages 477-496

Advent of diverse DNA markers to decipher genome sequence polymorphism

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENES;

EID: 85057363576     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter
Times cited : (7)

References (49)
  • 1
    • 0030138199 scopus 로고    scopus 로고
    • Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development
    • Bachem, C.W.B., R.S. van der Hoeven, S.M. de Bruijn, D. Vreugdenhil, M. Zabeau, and R.G.F. Visser (1996). Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development. Plant Journal 9:745-753.
    • (1996) Plant Journal , vol.9 , pp. 745-753
    • Bachem, C.W.B.1    Van Der Hoeven, R.S.2    De Bruijn, S.M.3    Vreugdenhil, D.4    Zabeau, M.5    Visser, R.G.F.6
  • 2
    • 0029392880 scopus 로고
    • Mapping of digested and undigested random amplified microsatellite polymorphisms in barley
    • Becker, J. and M. Heun (1995). Mapping of digested and undigested random amplified microsatellite polymorphisms in barley. Genome 38:991-998.
    • (1995) Genome , vol.38 , pp. 991-998
    • Becker, J.1    Heun, M.2
  • 3
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein, D., R.L. White, M. Skolnick, and R.W. Davis (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. American Journal of Human Genetics 32:314-331.
    • (1980) American Journal of Human Genetics , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 4
    • 0023055381 scopus 로고
    • A catalogue of splice junction and putative branch point sequences from plant introns
    • Brown, J.W. (1986). A catalogue of splice junction and putative branch point sequences from plant introns. Nucleic Acids Research 14:9549-9559.
    • (1986) Nucleic Acids Research , vol.14 , pp. 9549-9559
    • Brown, J.W.1
  • 5
    • 0000215709 scopus 로고    scopus 로고
    • Polymerase chain reaction with universal primers (UP PCR) and its applications to plant genome analysis
    • R.P. Adams, J.S. Miller, E.M. Goldenberg, and J.E. Adams, St. Louis: Missouri Botanical Garden
    • Bulat, S.A., N.V. Mironenko, M.N. Lapteva, and P.P. Strelchenko (1996). Polymerase chain reaction with universal primers (UP PCR) and its applications to plant genome analysis. In Conservation of plant genes II: Utilization of ancient and modern DNA, R.P. Adams, J.S. Miller, E.M. Goldenberg, and J.E. Adams (eds.). vol. 48, St. Louis: Missouri Botanical Garden, pp. 113-129.
    • (1996) Conservation of Plant Genes II: Utilization of Ancient and Modern DNA , vol.48 , pp. 113-129
    • Bulat, S.A.1    Mironenko, N.V.2    Lapteva, M.N.3    Strelchenko, P.P.4
  • 7
    • 0035040245 scopus 로고    scopus 로고
    • Inter-MITE polymorphism (IMP): A high throughput transposon-based genome mapping and finger printing approach
    • Chang, R.Y., L.S. O’Donoughue, and T.E. Bureau (2001). Inter-MITE polymorphism (IMP): A high throughput transposon-based genome mapping and finger printing approach. Theoretical and Applied Genetics 102:773-781.
    • (2001) Theoretical and Applied Genetics , vol.102 , pp. 773-781
    • Chang, R.Y.1    O’Donoughue, L.S.2    Bureau, T.E.3
  • 8
    • 0029098158 scopus 로고
    • Random amplified hybridization microsatellites (RAHM): Isolation of a new class of microsatellite-containing DNA clones
    • Cifarelli, R.A., M. Gallitelli, and F. Celliini (1995). Random amplified hybridization microsatellites (RAHM): Isolation of a new class of microsatellite-containing DNA clones. Nucleic Acids Research 23:3802-3803.
    • (1995) Nucleic Acids Research , vol.23 , pp. 3802-3803
    • Cifarelli, R.A.1    Gallitelli, M.2    Celliini, F.3
  • 9
    • 0029240502 scopus 로고
    • A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants
    • Demesure, B., N. Sodzi, and R.J. Petit (1995). A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology 4:129-131.
    • (1995) Molecular Ecology , vol.4 , pp. 129-131
    • Demesure, B.1    Sodzi, N.2    Petit, R.J.3
  • 10
    • 0032520694 scopus 로고    scopus 로고
    • Direct amplification of length polymorphisms (DALP), or how to get and characterize new markers in many species
    • Desmarais, E., I. Lanneluc, and J. Lagnel (1998). Direct amplification of length polymorphisms (DALP), or how to get and characterize new markers in many species. Nucleic Acids Research 26:1458-1465.
    • (1998) Nucleic Acids Research , vol.26 , pp. 1458-1465
    • Desmarais, E.1    Lanneluc, I.2    Lagnel, J.3
  • 11
    • 0036898179 scopus 로고    scopus 로고
    • A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA
    • Duminil, J., M.H. Pemonge, and R.J. Petit (2002). A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA. Molecular Ecology Notes 2:428-430.
    • (2002) Molecular Ecology Notes , vol.2 , pp. 428-430
    • Duminil, J.1    Pemonge, M.H.2    Petit, R.J.3
  • 14
    • 0032409406 scopus 로고    scopus 로고
    • Retrotransposonbased insertion polymorphisms (RBIP) for high throughput marker analysis
    • Flavell, A.J., M.R. Knox, S.R. Pearce, and T.H.N. Ellis (1998). Retrotransposonbased insertion polymorphisms (RBIP) for high throughput marker analysis. Plant Journal 16:643-650.
    • (1998) Plant Journal , vol.16 , pp. 643-650
    • Flavell, A.J.1    Knox, M.R.2    Pearce, S.R.3    Ellis, T.H.N.4
  • 15
    • 0035984048 scopus 로고    scopus 로고
    • Identification, analysis and utilization of conserved ortholog set markers for comparative genomics in higher plants
    • Fulton, T.M., R. Van der Hoeven, N.T. Eannetta, and S.D. Tanksley (2002). Identification, analysis and utilization of conserved ortholog set markers for comparative genomics in higher plants. Plant Cell 14:1457-1467.
    • (2002) Plant Cell , vol.14 , pp. 1457-1467
    • Fulton, T.M.1    Van Der Hoeven, R.2    Eannetta, N.T.3    Tanksley, S.D.4
  • 16
    • 0028311787 scopus 로고
    • Amplification of DNA markers from evolutionary diverse genomes using primers of simple-sequence repeats
    • Gupta, M., J. Chyi, J. Romero-Severson, and J.L. Owen (1994). Amplification of DNA markers from evolutionary diverse genomes using primers of simple-sequence repeats. Theoretical and Applied Genetics 89:998-1006.
    • (1994) Theoretical and Applied Genetics , vol.89 , pp. 998-1006
    • Gupta, M.1    Chyi, J.2    Romero-Severson, J.3    Owen, J.L.4
  • 17
    • 16344396626 scopus 로고    scopus 로고
    • Molecular markers from the transcribed/expressed region of the genome in higher plants
    • Gupta, P.K. and S. Rustogi (2004). Molecular markers from the transcribed/expressed region of the genome in higher plants. Functional and Integrative Genomics 4:139-162.
    • (2004) Functional and Integrative Genomics , vol.4 , pp. 139-162
    • Gupta, P.K.1    Rustogi, S.2
  • 18
    • 0034094869 scopus 로고    scopus 로고
    • The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat
    • Gupta, P.K. and R.K. Varshney (2000). The development and use of microsatellite markers for genetic analysis and plant breeding with emphasis on bread wheat. Euphytica 113:163-185.
    • (2000) Euphytica , vol.113 , pp. 163-185
    • Gupta, P.K.1    Varshney, R.K.2
  • 19
    • 0033889218 scopus 로고    scopus 로고
    • Differentiation of pathogenic Bartonella species by infrequent restriction site PCR
    • Handley, S.A. and R.L. Regnery (2000). Differentiation of pathogenic Bartonella species by infrequent restriction site PCR. Journal of Clinical Microbiology 38:3010-3015.
    • (2000) Journal of Clinical Microbiology , vol.38 , pp. 3010-3015
    • Handley, S.A.1    Regnery, R.L.2
  • 21
    • 0035872071 scopus 로고    scopus 로고
    • Sequence-tagged microsatellite profiling (STMP): A rapid technique for developing SSR markers
    • Hayden, M.J. and P.J. Sharp (2001). Sequence-tagged microsatellite profiling (STMP): A rapid technique for developing SSR markers. Nucleic Acids Research 29: e43.
    • (2001) Nucleic Acids Research , vol.29
    • Hayden, M.J.1    Sharp, P.J.2
  • 22
    • 0027763352 scopus 로고
    • PCR primed with VNTR core sequences yields species specific patterns and hypervariable probes
    • Heath, D.D., G.K. Iwama, and R.H. Devlin (1993). PCR primed with VNTR core sequences yields species specific patterns and hypervariable probes. Nucleic Acids Research 21:5782-5785.
    • (1993) Nucleic Acids Research , vol.21 , pp. 5782-5785
    • Heath, D.D.1    Iwama, G.K.2    Devlin, R.H.3
  • 23
    • 4544276003 scopus 로고    scopus 로고
    • Target region amplification polymorphism: A novel marker technique for plant genotyping
    • Hu, J. and B.A. Vick (2003). Target region amplification polymorphism: A novel marker technique for plant genotyping. Plant Molecular Biology Reporter 21: 289-294.
    • (2003) Plant Molecular Biology Reporter , vol.21 , pp. 289-294
    • Hu, J.1    Vick, B.A.2
  • 24
    • 85057382732 scopus 로고    scopus 로고
    • Diversity arrays: A solid state technology for sequence information independent genotyping
    • Jaccoud, D., K. Peng, D. Feinstein, and A. Kilian (2001). Diversity arrays: A solid state technology for sequence information independent genotyping. Nucleic Acids Research 49:425.
    • (2001) Nucleic Acids Research , vol.49 , pp. 425
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 27
    • 0034882348 scopus 로고    scopus 로고
    • Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica
    • Li, G. and C.F. Quiros (2001). Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: Its application to mapping and gene tagging in Brassica. Theoretical and Applied Genetics 103:455-461.
    • (2001) Theoretical and Applied Genetics , vol.103 , pp. 455-461
    • Li, G.1    Quiros, C.F.2
  • 28
    • 0027320058 scopus 로고
    • Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans
    • Meyer, W., T.G. Michell, E.Z. Freedman, and R. Vilgalys (1993). Hybridization probes for conventional DNA fingerprinting used as single primers in the polymerase chain reaction to distinguish strains of Cryptococcus neoformans. Journal of Clinical Biology 31:2274-2280.
    • (1993) Journal of Clinical Biology , vol.31 , pp. 2274-2280
    • Meyer, W.1    Michell, T.G.2    Freedman, E.Z.3    Vilgalys, R.4
  • 29
    • 0026052189 scopus 로고
    • Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations
    • Michelmore, R.W., I. Paran, and R.V. Kesseli (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proceedings of the National Academy of Sciences USA 88:9828-9832.
    • (1991) Proceedings of the National Academy of Sciences USA , vol.88 , pp. 9828-9832
    • Michelmore, R.W.1    Paran, I.2    Kesseli, R.V.3
  • 31
    • 0032078072 scopus 로고    scopus 로고
    • DCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics
    • Neff, M.M., J.D. Neff, J. Chory, and A.E. Pepper (1998). dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: Experimental applications in Arabidopsis thaliana genetics. Plant Journal 14:387-392.
    • (1998) Plant Journal , vol.14 , pp. 387-392
    • Neff, M.M.1    Neff, J.D.2    Chory, J.3    Pepper, A.E.4
  • 32
    • 3142583116 scopus 로고    scopus 로고
    • Characterization and comparison of three classes of microsatellite-based markers and their application in plants
    • Rakoczy-Trojanowska, M. and H. Bolibok (2004). Characterization and comparison of three classes of microsatellite-based markers and their application in plants. Cellular and Molecular Biology Letters 9:221-238.
    • (2004) Cellular and Molecular Biology Letters , vol.9 , pp. 221-238
    • Rakoczy-Trojanowska, M.1    Bolibok, H.2
  • 33
    • 33747439245 scopus 로고    scopus 로고
    • Molecular DNA marker analysis to assess the genetic fidelity of micropropagated woody plants
    • S.M. Jain and K. Ishii, Dordrecht, Netherlands: Kluwer Academic Publishers
    • Rani, V. and S.N. Raina (2003). Molecular DNA marker analysis to assess the genetic fidelity of micropropagated woody plants. In Micropropagation of woody trees and fruits, S.M. Jain and K. Ishii (eds.). Dordrecht, Netherlands: Kluwer Academic Publishers, pp. 75-101.
    • (2003) Micropropagation of Woody Trees and Fruits , pp. 75-101
    • Rani, V.1    Raina, S.N.2
  • 34
    • 0029095557 scopus 로고
    • Hybridization of microsatellites to RAPD: A new source of polymorphic markers
    • Richardson, T., S. Cato, J. Ramser, G. Kahl, and K. Weising (1995). Hybridization of microsatellites to RAPD: A new source of polymorphic markers. Nucleic Acids Research 23:3798-3799.
    • (1995) Nucleic Acids Research , vol.23 , pp. 3798-3799
    • Richardson, T.1    Cato, S.2    Ramser, J.3    Kahl, G.4    Weising, K.5
  • 35
    • 0042232552 scopus 로고    scopus 로고
    • Expressed sequence tags: Alternative or complement to whole genome sequences?
    • Rudd, S. (2003). Expressed sequence tags: Alternative or complement to whole genome sequences? Trends in Plant Science 8:321-329.
    • (2003) Trends in Plant Science , vol.8 , pp. 321-329
    • Rudd, S.1
  • 36
    • 2542424855 scopus 로고    scopus 로고
    • The application of LTR retrotransposons as molecular markers in plants
    • W.J. Miller and P. CapyTotowa, NJ: Humana Press
    • Schulman, A.H., A.J. Flavell, and T.H.N. Ellis (2004). The application of LTR retrotransposons as molecular markers in plants. In: Mobile genetic elements: Protocols and genomic applications, W.J. Miller and P. Capy (eds.). Totowa, NJ: Humana Press, pp. 145-171.
    • (2004) Mobile Genetic Elements: Protocols and Genomic Applications , pp. 145-171
    • Schulman, A.H.1    Flavell, A.J.2    Ellis, T.H.N.3
  • 37
    • 1642559189 scopus 로고    scopus 로고
    • Efficient validation of single nucleotide polymorphisms in plants by allele-specific PCR with an example from barley
    • Soleimani, V.D., B.R. Baum, and D.A. Johnson (2003). Efficient validation of single nucleotide polymorphisms in plants by allele-specific PCR with an example from barley. Plant Molecular Biology Reporter 21:281-288.
    • (2003) Plant Molecular Biology Reporter , vol.21 , pp. 281-288
    • Soleimani, V.D.1    Baum, B.R.2    Johnson, D.A.3
  • 38
    • 0030461788 scopus 로고    scopus 로고
    • Repetitive, genomespecific probes in wheat (Triticum aestivum L. em Thell) amplified with minisatellite core sequences
    • Somers, D.J., Z. Zhou, P.J. Bebeli, and J.P. Gustafson (1996). Repetitive, genomespecific probes in wheat (Triticum aestivum L. em Thell) amplified with minisatellite core sequences. Theoretical and Applied Genetics 93:982-989.
    • (1996) Theoretical and Applied Genetics , vol.93 , pp. 982-989
    • Somers, D.J.1    Zhou, Z.2    Bebeli, P.J.3    Gustafson, J.P.4
  • 39
    • 0001788530 scopus 로고
    • The use of synthetic oligonucleotides as specific hybridization probes in the diagnosis of genetic disorders
    • K.E. DavisOxford: IRL
    • Thein, S.I. and R.R. Wallace (1986). The use of synthetic oligonucleotides as specific hybridization probes in the diagnosis of genetic disorders. In Human genetic diseases: A practical approach, K.E. Davis (ed). Oxford: IRL, pp. 33-50.
    • (1986) Human Genetic Diseases: A Practical Approach , pp. 33-50
    • Thein, S.I.1    Wallace, R.R.2
  • 43
    • 0030991387 scopus 로고    scopus 로고
    • Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (SSAP)
    • Waugh, R., K. McClean, A.J. Flavell, S.R. Pearce, A. Kumar, and B.B.T. Thomas (1997). Genetic distribution of BARE-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (SSAP). Molecular and General Genetics 253:687-694.
    • (1997) Molecular and General Genetics , vol.253 , pp. 687-694
    • Waugh, R.1    McClean, K.2    Flavell, A.3    Pearce, S.R.4    Kumar, A.5    Thomas, B.B.T.6
  • 44
    • 0001464186 scopus 로고
    • Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction
    • Weining, S. and P. Langridge (1991). Identification and mapping of polymorphisms in cereals based on the polymerase chain reaction. Theoretical and Applied Genetics 82:209-216.
    • (1991) Theoretical and Applied Genetics , vol.82 , pp. 209-216
    • Weining, S.1    Langridge, P.2
  • 45
    • 0025633560 scopus 로고
    • Finger printing genomes using PCR with arbitrary primers
    • Welsh, J. and M. McClelland (1990). Finger printing genomes using PCR with arbitrary primers. Nucleic Acids Research 18:7213-7218.
    • (1990) Nucleic Acids Research , vol.18 , pp. 7213-7218
    • Welsh, J.1    McClelland, M.2
  • 48
    • 0035991196 scopus 로고    scopus 로고
    • Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula
    • Zhu, H., S.B. Cannon, N.D. Young, and D.R. Cook (2002). Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula. Molecular Plant-Microbe Interactions 15:529-539.
    • (2002) Molecular Plant-Microbe Interactions , vol.15 , pp. 529-539
    • Zhu, H.1    Cannon, S.B.2    Young, N.D.3    Cook, D.R.4
  • 49
    • 0028316648 scopus 로고
    • Genome fingerprinting by simple sequence repeat (SSR)–anchored polymerase chain reaction amplification
    • Zietkiewicz, E., A. Rafalski, and D. Labuda (1994). Genome fingerprinting by simple sequence repeat (SSR)–anchored polymerase chain reaction amplification. Genomics 20:176-183.
    • (1994) Genomics , vol.20 , pp. 176-183
    • Zietkiewicz, E.1    Rafalski, A.2    Labuda, D.3


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