Asian rice and weedy rice - evolutionary perspectives

Crop Ferality and Volunteerism

Volumn , Issue , 2005, Pages 257-278

  Vaughan, Duncan A ^a   Sanchez, Paulino L ^a   Ushiki, Jun ^a   Kaga, Akito ^a   Tomooka, Norihiko ^a  

^a NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85055378638     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1201/9781420037999     Document Type: Chapter

References (76)

1. Arashi K. 1974. Consideration on red rice in Japan. Tokyo: Yusankaku (in Japanese). 295 pp.
2. Azmi M, Abdullah MZ, Mislamah B, Baki BB. 2000. Management of weedy rice (Oryza sativa L.):the Malaysian experience. In Wild and weedy rice in rice ecosystems in Asia - a review. Limited Proceedings No. 2. Baki BB, Chin DV, Mortimer M, Eds., pp. 91-96. Los Banos, Philippines:International Rice Research Institute.
3. Bennetzen J. 2002. Opening the door to comparative plant biology. Science 296:60-63.
4. Bres-Patry C, Lorieux M, Clémont G, Bangratz M, Ghesquiere A. 2001. Heredity and genetic mapping of domestication-related traits in a temperate japonica weedy rice. Theor. Appl. Genet. 102:118-126.
5. Buckler IV ES, Thornsberry JM, Kresovich S. 2001. Molecular diversity and domestication of grasses. Genet. Res. 77:213-218.
6. Cai HW, Morishima H. 2000. Genomic regions affecting seed shattering and seed dormancy in rice. Theor. Appl. Genet. 100:840-846.
7. Cai HW, Morishima H. 2002. QTL clusters reflect character associations in wild and cultivated rice. Theor. Appl. Genet. 104:1217-1228.
8. Chang TT. 1964. Present knowledge of rice genetics and cytogenetics. Technical Bulletin 1. Los Banos, Philippines: International Rice Research Institute. 96 pp.
9. Chang TT. 1983. The origin and early cultures of the cereal grains and food legumes. In The origins of Chinese civilization, Keightley DN, Ed., pp 65-94, Berkeley, CA: University of California Press.
10. Chang TT. 2003. Origin, domestication and diversification. In Rice: evolution, history, production and technology, Wayne Smith C, Dilday RH, Eds., Hoboken, NJ: Wiley and Sons, pp. 27-65.
11. Chen WB, Nakamura I, Sato YI, Nakai H. 1993. Distribution of deletion type in cpDNA of cultivated and wild rice. Jpn. J. Genet. 68:597-603.
12. Cheng C, Motohashi R, Tsuchimoto S, Fukuta Y, Ohtsubo H, Ohtsubo E. 2002. Polyphyletic origin of cultivated rice: based on the interspersion pattern of SINEs. Mol. Biol. Evol. 20:67-75.
13. Cheng KS. 1985. A statistical evaluation of the classification of rice cultivars into hsien and keng subspecies. Rice Genet. Newsl. 2:46-48 (http://143.48.220.116/newsletters/rice:genetics/rgn2/v2II4html).
14. Clark RM, Linton E, Messing J, Doebley JF. 2004. Pattern of diversity in the genomic region near the maize domestication gene tb1. Proc. Natl. Acad. Sci. USA 101:700-707.
15. Clayton WD, Renvoize SA. 1986. Genera Graminum, London HMSO publications, 387 pp.
16. Dally AM, Second G. 1990. Chloroplast DNA diversity in wild and cultivated species of rice (genus OOryza section Oryza): cladistic mutation and genetic distance analysis. Theor. Appl. Genet. 80:209-222.
17. de Wet JMJ. 1992. The three phases of cereal domestication. In Grass evolution and domestication, Chapman GP, Ed., Cambridge, UK: Cambridge University Press.
18. Epimaki M, Koinange K, Singh SP, Gepts P. 1996. Genetic control of the domestication syndrome in common bean. Crop Sci. 36:1037-1045.
19. Federici MT, Vaughan DA, Tomooka N, Kaga A, Wang XW, Doi K. 2001. Analysis of Uruguayan weedy rice genetic diversity using AFLP molecular markers. Electron. J. Biotechnol. 4(3) December 15, 2001 (http://ejb.ucv.cl/content/vol4/issue3/abstract/3/index.html).
20. Garrity DP. 1984. Rice environmental classification: a comparative review. In Terminology for rice growing environments, p. 11-26, Los Banos, Philippines: International Rice Research Institute.
21. Glaszmann JC. 1988. Geographic pattern of variation among Asian native rice cultivars (OOryza sativa L.) based on fifteen isozyme loci. Genome 30:782-792.
22. Gunawardena, I. 1983. Sri Lanka. In 1983 Rice germplasm conservation workshop, pp. 38-39, Los Banos, Philippines: International Rice Research Institute and International Board for Plant Genetic Resources.
23. Hammer K. 1984. The domestication syndrome. Kulturpflanze 32:11-34 (In German).
24. Harlan JR. 1965. The possible role of weed races in the evolution of cultivated plants. Euphytica 14:173-176.
25. Harlan JR. 1992. Origin and processes of domestication. In Grass evolution and domestication, Chapman GP, Ed., Cambridge, UK: Cambridge University Press, pp. 159-175.
26. Harper JL. 1977. Population biology of plants. London: Academic Press, 892 pp.
27. Hill JE, Smith RJ, Bayer DE. 1994. Rice weed control: current technology and emerging issues in temperate rice. Aust. J. Exp. Agric. 34:1021-1029.
28. Ho NK. 1991. Comparative ecological studies of weed flora in irrigated rice fields in the Muda area. Alor Setar, Malaysa: Muda Agricultural Development Authority, 97 pp.
29. Ishii T, Terauchi T, Tsunewaki T. 1988. Restriction endonuclease analysis of chloroplast DNA from A-genome diploid species of rice. Jpn. J. Genet. 63:523-536.
30. Ishii T. 2001 Occurrences of weedy rice in dry-seeded rice fields in Okayama Prefecture, J. Agric. Sci. (Nogyou-gijyutsu). 56:257-261 (in Japanese).
31. Ishikawa R, Nakamura I, Nishihara T, Kikuchi M, Senda M, Akada S, Harada T, Niizeki M. 2002. Origin of cytoplasmic substituted red cultivars found in Japan. Theor. Appl. Genet. 105:608-613.
32. Kellogg EA. 2000. The Grasses: a case study in macroevolution. Annu. Rev. Ecol. Syst. 31:217-238.
33. Li JM, Yuan LP. 2000. Hybrid rice: genetics, breeding and seed production. Plant Breed. Rev. 17:15-158.
34. Lin SY, Sasaki T, Yano M. 1998. Mapping quantitative trait loci controlling seed dormancy and heading date in rice, OOryza sativa L., using backcross inbred lines. Theor. Appl. Genet. 96:997-1003.
35. Mew TW, Leung H, Savary S, Vera Cruz CM, Leach JE. 2004. Looking ahead in disease research and management. Crit. Rev. Plant Sci. 23:103-127.
36. Miura, K, Lin SY, Yano M, Nagamine T. 2002. Mapping quantitative trait loci controlling seed longevity in rice (OOryza sativa L.). Theor. Appl.Genet. 104:981-986.
37. Miyajima Y, Takahashi N. 1974. Occurrences of red rice “Toukon” in Nagano Prefecture, J. Agric. Sci. (Nogyou-gijyutsu) 29:453-455 (in Japanese).
38. Morishima H. 2001. Evolution and domestication of rice. In Rice genetics IV, Khush GS, Brar DS, Hardy B, Eds., pp. 63-77. Enfield, New Hampshire: Science Publishers Inc.
39. Morishima H, Gadrinab LU. 1987. Are the Asian common wild-rices differentiated into the indica and japonica types? In Crop exploration and utilization of genetic resources, Hsieh SC, Ed., pp. 11-20. Changhua, Taiwan: Taichung Distr. Agric. Improv. Sta.
40. Morishima H, Oka HI. 1981. Phylogenetic differentiation of cultivated rice, XXII. Numerical evaluation of the indica-japonica differentiation. Jpn. J. Breed. 31:402-413.
41. Morishima H, Sano Y, Oka HI. 1992. Evolutionary studies in cultivated rice and its relatives. Oxford Surv. Evol. Biol. 8:135-184.
42. Miura K, Lin SY, Yano M, Nagamine T. 2002. Mapping quantitative trait loci controlling seed longevity in rice (OOryza sativa L.). Theor. Appl. Genet. 104:981-986.
43. Nagai YS, Sobrizal, Sanchez PL, Kurakazu T, Doi K, Yoshimura A. 2002. SSh3, a gene for seed shattering, commonly found in wild rices. Rice Genet. Newsl. 19:74-75 (http://143.48.220.116/newsletters/rice:genetics/rgn19/b31.html).
44. Ogawa T. 2003. Genome research in genus Oryza. In Monograph on genus Oryza, Nanda JS, Sharma SD, Eds., pp. 171-212. New Dehli: Oxford & IBH Publishing Co. Pvt. Ltd.
45. Ohtsubo H, Cheng C, Ohsawa I, Tsuchimoto S, Ohtsubo E. 2004. Rice retrotransposon pp-SINE1 and origin of cultivated rice. Breed. Sci. 54:1-11.
46. Oka HI. 1988. Origin of cultivated rice. Tokyo: Japan Scientific Societies Press, 254 pp.
47. Oka HI, Chang WT. 1959. The impact of cultivation on populations of wild rice, OOryza sativa f. pontanea. Phyton 13:105-117.
48. Oka HI, Chang WT. 1961. Hybrid swarms between wild and cultivated rice species Oryza perennis and O. sativa. Evolution 15:418-430.
49. Sanchez PL, Kurakazu T, Hirata C, Sobrizal, Yoshimura A. 2002. Identification and mapping of seed shattering genes using introgression lines from wild rice species. Rice Genet. Newsl. 19:78-79 (http://www.shigen.nig.ac.jp/rice/oryzabase/rgn/newsletter.jsp).
50. Sano R, Morishima H. 1992. Indica-japonica differentiation of rice cultivars viewed from variations in key characters and isozymes, with special reference to landraces from the Himalayan hilly areas. Theor. Appl. Genet. 84:266-274.
51. Sato YI, Ishikawa R, Morishima H. 1990. Non-random association of genes and characters found in indica x japonica hybrids of rice. Heredity 65:75-79.
52. Sato YI. 2000. Origin and evolution of wild, weedy and cultivated rice. In Wild and weedy rice in rice ecosystems in Asia - a review, Baki BB, Chin DV, Mortimer M, Eds., pp. 7-15. Los Banos, Philippines: International Rice Research Institute.
53. Second, G. 1985. Evolutionary relationships in the ssativa group of Oryza based on isozyme data. Genet. Sel. Evol. 17:89-114.
54. Second G. 1989. Additional observations and collection of the OOryza latifolia Desv. species complex. Rice Genet. Newsl. 6:73-76 (http://143.48.220.116/newsletters/rice:genetics/rgn6/v6p73.html).
55. Second G. 1991. Molecular markers in rice systematics and the evaluation of genetic resources. In Biotechnology for agriculture and forestry vol. 14 Rice, Bajaj YPS, Ed., pp. 468-494. Berlin: Springer-Verlag.
56. Second G. 1991. Trip to San Jose area, Occidental Mindoro. Mimeographed. Los Banos, Philippines:International Rice Research Institute Library.
57. Second G, Ghesquerre A. 1984. Collection and observation of wild rice (Oryza) species in western India. Report of a survey from October 1-28, 1984. Mimeographed. Los Banos, Philippines: International Rice Research Institute Library.
58. Suh SH, Sato YI, Morishima H. 1997. Genetic characterization of weedy rice (OOryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theor. Appl. Genet. 94:316-321.
59. Uozu S, Ikehashi H, Ohmido N, Ohtsubo H, Ohtsubo E, Fukui K. 1997. Repetitive sequences; cause of variation in genome size and chromosome morphology in the genus Oryza. Plant. Mol. Biol. 35:791-799.
60. Ushiki J, Ishikawa R, Ishii T, Tezuka M, Sakai N. 2004. Genetic polymorphism and speculation of origin of weedy rice strains in Japan. Weed Sci. Soc. Am. Abstracts 44:14.
61. Ushiki J, Ishikawa R, Ishii T. 2004. Genetic polymorphism of japonica and indica weedy rice strains found in Okayama prefecture. Breed. Res. 6186 (in Japanese).
62. Vaughan DA, Watanabe H, Hille Ris Lambers D, Zain MA, Tomooka N. 1999. Weedy rice complexes in direct seeding rice cultures. In Proc. Int. Symp. World Food Security, Horie T, Geng S, Amano T, Inamura T, Shiraiwa T, Eds., pp. 277-280. Kyoto: Crop Sci. Soc. Japan.
63. Vaughan DA, Tomooka N, Kaga A, Shcherban A, Xu RQ, Jinno Y, Doi K, Kashiwaba K. 2000. Population analyses using different molecular techniques to determine strategies for in-situ conservation - examples from the genera Glycine, Oryza and Vigna. In Integration of biodiversity and genome technology for crop improvement, Oono K, Komatsuda T, Kadowaki K, Vaughan DA, Eds., pp. 69-72. Tsukuba, Japan: National Institute of Agrobiological Resources.
64. Vaughan DA, Morishima H. 2003. The biosystematics of the genus Oryza. In Rice: Evolution, history, production and technology, Wayne Smith C, Dilday RH, Eds., pp. 27-65. Hoboken, NJ: Wiley and Sons.
65. Vaughan DA, Morishima H, Kadowaki K. 2003. OOryza diversity research. Curr. Opin. Plant Biol. 6:139-146.
66. Vaughan DA, Miyazaki S, Miyashita K. 2004. Rice gene pool and human migrations. In Biological resources and migration, Wessel G, Ed., pp. 1-13. Berlin: Springer-Verlag.
67. Vaughan LK, Ottis BV, Prazak-Havey AM, Bormans CA, Sneller C, Chandler JM, Park WD. 2001. Is all red rice found in commercial rice really Oryza sativa? Weed Sci. 49:468-476.
68. Wahab AH, Suhaimi O. 1991. Padi angin adverse effects and methods of its eradication (in Malay, English abstract). Teknol. Padi, MARDI 7:27-31.
69. Wan J, Nakazaki T, Kawaura K, Ikehashi H. 1997. Identification of marker loci for seed dormancy in rice (OOryza sativa L.). Crop Sci. 37:1759-1763.
70. Wang RL, Stec A, Hey J, Lukens L, Doebley J. 1999. The limits of selection during maize domestication. Nature 398:236-239.
71. Watabe, T. 1967. Glutinous rice in northern Thailand. Reports on Research in Southeast Asia Natural Science Series N-2. Kyoto: CSEAS, Kyoto University, 160 pp.
72. Watanabe H, Man A, Ismail MZ. 1996. Ecology of major weeds and their control in direct seeding rice culture of Malaysia. MARDI/MADA/JIRCAS collaborative study. Tsukuba, Japan: Japan Int. Res. Center Agricultural Sci., 202 pp.
73. Xiao J, Li J, Grandillo S, Ahn SN, Yuan LP, Tanksley SD, McCouch SR. 1998. Identification of traitimproving quantitative trait loci alleles from wild rice relative, Oryza rufipogon. Genetics 150:899-909.
74. 2 population of a cross between Oryza sativa and O. rufipogon. Theor. Appl. Genet. 98:243-251.
75. Yamanaka S, Nakamura I, Nakai H, Sato YI. 2003. Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O. rufipogon. Genet. Res. Crop Evol. 50:529-538.
76. Yamasaki M. 1929. On the variation of rice varieties in the resistance to the toxic action of potassium chlorate, and its practial significance. National Institute of Crop Science, Koonosu, Saitama, Ministry of Agriculture and Forestry, Jpn. Annu. Rep. 1:1-27 (in Japanese with English summary).