Dual origin of the cultivated rice based on molecular markers of newly collected annual and perennial strains of wild rice species, Oryza nivara and O. rufipogon

Genetic Resources and Crop Evolution

Volumn 50, Issue 5, 2003, Pages 529-538

  Yamanaka, Shinsuke ^a,c   Nakamura, Ikuo ^b   Nakai, Hirokazu ^a   Sato, Yo Ichiro ^a  

^a SHIZUOKA UNIVERSITY   (Japan)

^b CHIBA UNIVERSITY   (Japan)

^c UNIVERSITY OF TSUKUBA   (Japan)

Author keywords

Annual and perennial types; Genus Oryza; indica japonica differentiation; Origin of cultivated rice; p SINE1 r2; Sampling method; Wild relatives of rice

Indexed keywords

BIOMARKER; CULTIVATION; GENOME; RICE; SAMPLING;

EMBRYOPHYTA; JAPONICA; ORYZA; ORYZA NIVARA; ORYZA RUFIPOGON; ORYZA SATIVA; TRANSPOSONS; ZIZANIA;

EID: 0344155086     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1023926802198     Document Type: Article

References (37)

1. Akimoto M., Shimamoto Y. and Morishima H. 1999. The extinction of genetic resources of Asian wild rice, Oryza rufipogon Griff.: A case study in Thailand. Genet. Resour. Crop Evol. 46: 419-425.
2. Barbier P. 1989a. Genetic variation and ecotypic differentiation in the wild rice species Oryza rufipogon. I. Population differentiation in life-history traits and isozyme loci. Jpn. J. Genet. 64: 259-271.
3. Barbier P. 1989b. Genetic variation and ecotypic differentiation in the wild rice species Oryza rufipogon. II. Influence of the mating system and life-history traits on the genetic structure of populations. Jpn. J. Genet. 64: 273-285.
4. Barbier P., Morishima H. and Ishihama A. 1991. Phylogenetic relationship of annual and perennial wild rice: probing by direct DNA sequencing. Theor. Appl. Genet. 81: 693-702.
5. Chang T.T. 1976. The origin, evolution, cultivation, dissemination, and diversification of Asian and African rices. Euphytica 25: 425-441.
6. Chen W.B., Nakamura I., Sato Y.-I. and Nakai H. 1993. Distribution of deletion type in cpDNA of cultivated and wild rice. Jpn. J. Genet. 68: 597-603.
7. Dally A.M. and Second G. 1990. Chloroplast DNA diversity in wild and cultivated species of rice (Genus Oryza, section Oryza). Cladistic-mutation and genetic-distance analysis. Theor. Appl. Genet. 80: 209-222.
8. Deininger P.L. 1989. SINEs: Short interspersed repeated DNA elements in higher eucaryotes. In: Berg D.E. and Howe M.M. (eds), Mobile DNA. American Society for Microbiology, Washington D. C., pp. 619-636.
9. Dellaporta S.L., Wood J. and Hicks J.B. 1983. A plant DNA minipreparation: version II. Plant Mol. Biol. Rept. 1: 19-21.
10. Fukui K., Ohmido N. and Khush G.S. 1994. Variability in rDNA loci in the genus Oryza detected through fluorescence in situ hybridization. Theor. Appl. Genet. 87: 893-899.
11. Hirano H.-Y., Mochizuki K., Umeda M., Ohtsubo H., Ohtsubo E. and Sano Y. 1994. Retrotransposition of a plant SINE into the wx locus during evolution of rice. J. Mol. Evol. 38: 132-137.
12. Ishii T., Terauchi T. and Tsunewaki K. 1988. Restriction endonuclease analysis of chloroplast DNA from A-genome diploid species of rice. Jpn. J. Genet. 63: 523-536.
13. Kanazawa A., Akimoto M., Morishima H. and Shimamoto Y. 2000. Inter-and intra-specific distribution of Stowaway transposable elements in AA-genome species of wild rice. Theor. Appl. Genet. 101: 327-335.
14. Kanno A., Watanabe N., Nakamura I. and Hirai A. 1993. Variations in chloroplast DNA from rice (Oryza sativa): differences between deletions mediated by short direct-repeat sequences within a single species. Theor. Appl. Genet. 86: 579-586.
15. Kato S., Kosaka H. and Hara S. 1928. On the affinity of rice varieties as shown by the fertility of hybrid plants. Bull. Sci. Fac. Agr. Kyushu Univ. 3: 132-147.
16. Mochizuki K., Umeda M. and Ohtsubo H. 1992. Characterization of a plant SINE, p-SINE 1, in rice genomes. Jpn. J. Genet. 57: 155-166.
17. Morisima H., Oka H.-I. and Chang W.T. 1961. Directions of differentiations in populations of wild rice, Oryza perennis and O. sativa f. spontanea. Evolution 15: 339-326.
18. Morishima H. and Gadrinab L.U. 1987. Are the Asian common wild-rices differentiated into the Indica and Japonica types? In: and (eds), Crop Exploration and Utilization of Genetic Resources. Taiwan, pp. 11-20.
19. Morishima H. and Barbier P. 1990. Mating system and genetic structure of natural populations in wild rice Oryza rufipogon. Plant Species Biol. 5: 31-39.
20. Morishima H. 1991. Association between Pox-1 variation and seed productivity potential in wild rice. In: IRRI Genetics II. IRRI, Los Banos, Philippines (Ed.: IRRI). pp. 1-9.
21. Morishima H., Sano Y. and Oka H.-I. 1992. Evolutionary studies in cultivated rice and its wild relatives. Oxford Surveys in Evolutionary Biology 8: 135-184.
22. Motohashi R., Mochizuki K., Ohtsubo H. and Ohtsubo E. 1997. Structures and distribution of p-SINE1 members in rice genome. Theor. Appl. Genet. 95: 359-368.
23. Oka H.-I. 1958. Intervarietal variation and classification of cultivated rice. Ind. J. Genet. Plant Breed. 18: 79-89.
24. Oka H.-I. and Chang W.T. 1962. Rice varieties intermediate between wild and cultivated forms and the origin of Japonica type. Bot. Bull. Acad. Sinica. 3: 109-131.
25. Oka H.-I. 1974. Experimental studies on the origin of cultivated rice. Genetics 78: 475-486.
26. Oka H.-I. 1988. Origin of cultivated rice. JSSP/Elsevier, Tokyo, Amsterdam.
27. Sano Y., Morishima H. and Oka H.-I. 1980. Intermediate perennial-annual populations of Oryza perennis found in Thailand and their evolutionary significance. Bot. Mag. Tokyo 93: 291-305.
28. Sato Y.-I., Ishikawa R. and Morishima H. 1990. Non-random association of genes and characters found in indica x japonica hybrids of rice. Heredity 65: 75-79.
29. Sato Y.-I. (ed.) 1994. Ecological-genetic studies on wild and cultivated rice in tropical Asia (4th survey). Tropics 3: 189-245.
30. Sato Y.-I. 1996. Origin of rice and rice cultivation based on DNA analysis. NHK books, Tokyo.
31. Sato Y-I. 1999. Origin and dissemination of cultivated rice in the Eastern Asia In: Interdisciplinary Perspectives on the Origins of the Japanese. Int. Res. Center Jap. Studies, Kyoto, pp. 143-153.
32. Second G. 1985. Evolutionary relationship in the Sativa group of Oryza based on isozyme data. Genet. Sel. Evol. 17: 89-114.
33. Sharma S.D. and Shastry S.V. 1965. Taxisonomic studies in genus Oryza L. III. O. rufipogon Griff. sensu stricto and O. nivara Sharma et Shastry nom. nov. Indian J. Genet. Plant Breed. 25: 157-167.
34. Suh H.S., Sato Y.-I. and Morishima H. 1997. Genetic characterization of weedy rice (Oryza sativa L.) based on morpho-physiology, isozymes and RAPD markers. Theor. Appl. Genet. 94: 316-321.
35. Umeda M., Ohtsubo H. and Ohtsubo E. 1991. Diversification of the rice Waxy gene by insertion of mobile DNA elements into introns. Jpn. J. Genet. 66: 569-586.
36. Vaughan D.A. 1994. The Wild Relatives of Rice. IRRI, Los Banos, Philippines.
37. Vaughan D.A. and Chang T.T. 1992. In situ conservation of rice genetic resources. Econ. Bot. 46: 368-383.