-
1
-
-
0019423856
-
Sequence, and organization of the human mitochondrial genome
-
Anderson, S. and A.T. Bankier, B.G. Barrell, M.H.L. De Bruijn, A.R. Coulson, J. Drouin et al. 1981. Sequence, and organization of the human mitochondrial genome. Nature 290: 457-465.
-
(1981)
Nature
, vol.290
, pp. 457-465
-
-
Anderson, S.1
Bankier, A.T.2
Barrell, B.G.3
De Bruijn, M.H.L.4
Coulson, A.R.5
Drouin, J.6
-
2
-
-
0033978501
-
A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida
-
Armstrong, M.R. and V.C. Block, and M.S. Phillips. 2000. A multipartite mitochondrial genome in the potato cyst nematode Globodera pallida. Genetics 154: 181-192.
-
(2000)
Genetics
, vol.154
, pp. 181-192
-
-
Armstrong, M.R.1
Block, V.C.2
Phillips, M.S.3
-
3
-
-
0002495627
-
Mitochondrial genomes of Anthozoa (Cnidaria)
-
Palmieri F., Papa S., Saccone C., and Gadaleta N. (eds), Elsevier Science BV Amsterdam, The Netherlands
-
Beagley, C.T. and J.L. Macfarlane, G.A. Pont-Kingdon, R. Okimoto, N. Okada, and D.R. Wolstenholme. 1995. Mitochondrial genomes of Anthozoa (Cnidaria). Palmieri F., Papa S., Saccone C., and Gadaleta N. (eds) Progress in cell research - Symposium on “Thirty Years of Progress in Mitochondrial Bioenergetics and Molecular Biology”. Elsevier Science BV Amsterdam, The Netherlands, pp 149-153.
-
(1995)
Progress in cell research - Symposium on “Thirty Years of Progress in Mitochondrial Bioenergetics and Molecular Biology
, pp. 149-153
-
-
Beagley, C.T.1
Macfarlane, J.L.2
Pont-Kingdon, G.A.3
Okimoto, R.4
Okada, N.5
Wolstenholme, D.R.6
-
4
-
-
0030006903
-
Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: One intron contains genes for subunits 1 and 3 of NADH dehydrogenase
-
Beagley, C.T. and N.A. Okada, and D.R. Wolstenholme. 1996. Two mitochondrial group I introns in a metazoan, the sea anemone Metridium senile: one intron contains genes for subunits 1 and 3 of NADH dehydrogenase. Proc. Natl. Acad. Sci. USA 93: 5619-5623.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5619-5623
-
-
Beagley, C.T.1
Okada, N.A.2
Wolstenholme, D.R.3
-
5
-
-
0031972433
-
The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): Introns, a paucity of tRNA genes, and a near-standard genetic code
-
Beagley, C.T. and R. Okimoto, and D.R. Wolstenholme. 1998. The mitochondrial genome of the sea anemone Metridium senile (Cnidaria): introns, a paucity of tRNA genes, and a near-standard genetic code. Genetics 148: 1091-1108.
-
(1998)
Genetics
, vol.148
, pp. 1091-1108
-
-
Beagley, C.T.1
Okimoto, R.2
Wolstenholme, D.R.3
-
6
-
-
0032417005
-
Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: Conserved gene order among octocorals
-
Beaton, M.J. and A.J. Roger, and T. Cavalier-Smith. 1998. Sequence analysis of the mitochondrial genome of Sarcophyton glaucum: conserved gene order among octocorals. J. Mol. Evol. 47: 697-708.
-
(1998)
J. Mol. Evol.
, vol.47
, pp. 697-708
-
-
Beaton, M.J.1
Roger, A.J.2
Cavalier-Smith, T.3
-
7
-
-
43949119443
-
The complete mitochondrial genome of the demosponge Negombata magnifica (Poecilosclerida)
-
Belinky, F. and C. Rot, M. Ilan and D. Huchon. 2008. The complete mitochondrial genome of the demosponge Negombata magnifica (Poecilosclerida). Mol. Phylogenet. Evol. 47: 1238-1243.
-
(2008)
Mol. Phylogenet. Evol.
, vol.47
, pp. 1238-1243
-
-
Belinky, F.1
Rot, C.2
Ilan, M.3
Huchon, D.4
-
8
-
-
0033218457
-
Phylogenetic relationships within the class Anthozoa (phylum Cnidaria) based on nuclear 18S rDNA sequences
-
Berntson, E.A. and S.C. France, and L.S. Mullineaux. 1999. Phylogenetic relationships within the class Anthozoa (phylum Cnidaria) based on nuclear 18S rDNA sequences. Mol. Phylogenet. Evol. 13: 417-433.
-
(1999)
Mol. Phylogenet. Evol.
, vol.13
, pp. 417-433
-
-
Berntson, E.A.1
France, S.C.2
Mullineaux, L.S.3
-
9
-
-
0028976102
-
Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
-
Boore, J.L. and T.M. Collins, D. Stanton, L.L. Daehler, and W.M. Brown. 1995. Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376: 163-165.
-
(1995)
Nature
, vol.376
, pp. 163-165
-
-
Boore, J.L.1
Collins, T.M.2
Stanton, D.3
Daehler, L.L.4
Brown, W.M.5
-
10
-
-
0031769998
-
Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
-
Boore, J.L. and W.M. Brown. 1998. Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Curr. Opin. Genet. Dev. 8: 668-674.
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 668-674
-
-
Boore, J.L.1
Brown, W.M.2
-
11
-
-
0019480730
-
Small is beautiful-portrait of a mitochondrial genome
-
Borst, P. and L.A. Grivell. 1981. Small is beautiful-portrait of a mitochondrial genome. Nature 290: 443-444.
-
(1981)
Nature
, vol.290
, pp. 443-444
-
-
Borst, P.1
Grivell, L.A.2
-
12
-
-
0141702035
-
Larval development in the Homoscleromorpha (Porifera, Demospongiae)
-
Boury-Esnault, N. and A. Ereskovsky, C. Bezac, and D. Tokina. 2003. Larval development in the Homoscleromorpha (Porifera, Demospongiae). Invertebr. Biol. 122: 187-202.
-
(2003)
Invertebr. Biol.
, vol.122
, pp. 187-202
-
-
Boury-Esnault, N.1
Ereskovsky, A.2
Bezac, C.3
Tokina, D.4
-
13
-
-
0024351697
-
Mitochondrial DNA in the bark weevils: Size, structure and heteroplasmy
-
Boyce, T. M. and M.E. Zwick, and C.F. Aquadro. 1989. Mitochondrial DNA in the bark weevils: Size, structure and heteroplasmy. Genetics 123: 825-836.
-
(1989)
Genetics
, vol.123
, pp. 825-836
-
-
Boyce, T.M.1
Zwick, M.E.2
Aquadro, C.F.3
-
14
-
-
33847251519
-
The complete mitochondrial genome of the black coral Chrysopathes formosa (Cnidaria: Anthozoa: Antipatharia) supports classification of antipatharians within the subclass Hexacorallia
-
Brugler, M.R. and S.C. France. 2007. The complete mitochondrial genome of the black coral Chrysopathes formosa (Cnidaria: Anthozoa: Antipatharia) supports classification of antipatharians within the subclass Hexacorallia. Mol. Phylogenet. Evol. 42: 776-788.
-
(2007)
Mol. Phylogenet. Evol.
, vol.42
, pp. 776-788
-
-
Brugler, M.R.1
France, S.C.2
-
15
-
-
0024967160
-
Accelerated evolution of a falsetruffle from a mushroom ancestor
-
Bruns, T.D. and R. Fogel, T.J. White, and J.D. Palmer. 1989. Accelerated evolution of a falsetruffle from a mushroom ancestor. Nature 339: 140-142.
-
(1989)
Nature
, vol.339
, pp. 140-142
-
-
Bruns, T.D.1
Fogel, R.2
White, T.J.3
Palmer, J.D.4
-
16
-
-
0037417915
-
Unique mitochondrial genome architecture in unicellular relatives of animals
-
Burger, G. and L. Forget, Y. Zhu, M.W. Gray, and B.F. Lang. 2003. Unique mitochondrial genome architecture in unicellular relatives of animals. Proc. Natl. Acad. Sci. USA 100: 892-897.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 892-897
-
-
Burger, G.1
Forget, L.2
Zhu, Y.3
Gray, M.W.4
Lang, B.F.5
-
17
-
-
0031770677
-
The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
-
Castresana, J. and G. Feldmaier-Fuchs, S. Yokobori, N. Satoh and S. Paabo. 1998. The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria. Genetics 150: 1115-1123.
-
(1998)
Genetics
, vol.150
, pp. 1115-1123
-
-
Castresana, J.1
Feldmaier-Fuchs, G.2
Yokobori, S.3
Satoh, N.4
Paabo, S.5
-
18
-
-
37249037188
-
The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): An idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations
-
Chen, C. and C.F. Dai, S. Plathong, C.Y. Chiou, and C.A. Chen. 2008. The complete mitochondrial genomes of needle corals, Seriatopora spp. (Scleractinia: Pocilloporidae): an idiosyncratic atp8, duplicated trnW gene, and hypervariable regions used to determine species phylogenies and recently diverged populations. Mol. Phylogenet. Evol. 46: 19-33.
-
(2008)
Mol. Phylogenet. Evol.
, vol.46
, pp. 19-33
-
-
Chen, C.1
Dai, C.F.2
Plathong, S.3
Chiou, C.Y.4
Chen, C.A.5
-
19
-
-
33644600635
-
Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models
-
Collins, A.G. and P. Schuchert, A.C. Marques, T. Jankowski, M. Medina, and B. Schierwater. 2006. Medusozoan phylogeny and character evolution clarified by new large and small subunit rDNA data and an assessment of the utility of phylogenetic mixture models. Syst. Biol. 55: 97-115.
-
(2006)
Syst. Biol.
, vol.55
, pp. 97-115
-
-
Collins, A.G.1
Schuchert, P.2
Marques, A.C.3
Jankowski, T.4
Medina, M.5
Schierwater, B.6
-
20
-
-
13844320937
-
Do early branching lineages signify ancestral traits?
-
Crisp, M.D. and L.G. Cook. 2005. Do early branching lineages signify ancestral traits? Trends Ecol. Evol. 20: 122-128.
-
(2005)
Trends Ecol. Evol.
, vol.20
, pp. 122-128
-
-
Crisp, M.D.1
Cook, L.G.2
-
21
-
-
0031880429
-
Reconstructing ancestral character states: A critical reappraisal
-
Cunningham, C.W. and K.E. Omland, and T.H. Oakley. 1998. Reconstructing ancestral character states: a critical reappraisal. Trends Ecol. Evol. 13: 361-366.
-
(1998)
Trends Ecol. Evol.
, vol.13
, pp. 361-366
-
-
Cunningham, C.W.1
Omland, K.E.2
Oakley, T.H.3
-
23
-
-
33745021824
-
Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum
-
Dellaporta, S.L. and A. Xu, S. Sagasser, W. Jakob, M.A. Moreno, L.W. Buss, and B. Schierwater. 2006. Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum. Proc. Natl. Acad. Sci. USA 103: 8751-8756.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 8751-8756
-
-
Dellaporta, S.L.1
Xu, A.2
Sagasser, S.3
Jakob, W.4
Moreno, M.A.5
Buss, L.W.6
Schierwater, B.7
-
24
-
-
42149157760
-
Broad phylogenomic sampling improves resolution of the animal tree of life
-
Dunn, C.W. and A. Hejnol, D.Q. Matus, K. Pang, W.E. Browne, S.A. Smith et al. 2008. Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452: 745-749.
-
(2008)
Nature
, vol.452
, pp. 745-749
-
-
Dunn, C.W.1
Hejnol, A.2
Matus, D.Q.3
Pang, K.4
Browne, W.E.5
Smith, S.A.6
-
25
-
-
1342304940
-
Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida)
-
Duran, S. and M. Pascual, and X. Turon. 2004. Low levels of genetic variation in mtDNA sequences over the western Mediterranean and Atlantic range of the sponge Crambe crambe (Poecilosclerida). Mar. Biol. 144: 31-35.
-
(2004)
Mar. Biol.
, vol.144
, pp. 31-35
-
-
Duran, S.1
Pascual, M.2
Turon, X.3
-
26
-
-
33845890795
-
Mitochondrial diversity of early-branching Metazoa is revealed by the complete mt genome of a haplosclerid demosponge
-
Erpenbeck, D. and O. Voigt, M. Adamski, M. Adamska, J. Hooper, G. Worheide, and B. Degnan. 2007. Mitochondrial diversity of early-branching Metazoa is revealed by the complete mt genome of a haplosclerid demosponge. Mol. Biol. Evol. 24: 19-22.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 19-22
-
-
Erpenbeck, D.1
Voigt, O.2
Adamski, M.3
Adamska, M.4
Hooper, J.5
Worheide, G.6
Degnan, B.7
-
27
-
-
84959798530
-
Cases in which parsimony or compatibility methods will be positively misleading
-
Felsenstein, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27: 401-410.
-
(1978)
Syst. Zool.
, vol.27
, pp. 401-410
-
-
Felsenstein, J.1
-
28
-
-
34548498404
-
The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: The putative D-loop and a novel ORF of unknown function
-
Flot, J.F. and S. Tillier. 2007. The mitochondrial genome of Pocillopora (Cnidaria: Scleractinia) contains two variable regions: the putative D-loop and a novel ORF of unknown function. Gene 401: 80-87.
-
(2007)
Gene
, vol.401
, pp. 80-87
-
-
Flot, J.F.1
Tillier, S.2
-
29
-
-
28444452245
-
Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia)
-
Fukami, H. and N. Knowlton. 2005. Analysis of complete mitochondrial DNA sequences of three members of the Montastraea annularis coral species complex (Cnidaria, Anthozoa, Scleractinia). Coral Reefs 24: 410-417.
-
(2005)
Coral Reefs
, vol.24
, pp. 410-417
-
-
Fukami, H.1
Knowlton, N.2
-
30
-
-
0036593395
-
Ancient phylogenetic relationships
-
Gribaldo, S. and H. Philippe. 2002. Ancient phylogenetic relationships. Theor. Popul. Biol. 61: 391-408.
-
(2002)
Theor. Popul. Biol.
, vol.61
, pp. 391-408
-
-
Gribaldo, S.1
Philippe, H.2
-
31
-
-
34547697011
-
Glass sponges and bilaterian animals share derived mitochondrial genomic features: A common ancestry or parallel evolution?
-
Haen, K.M. and B.F. Lang, S.A. Pomponi, and D.V. Lavrov. 2007. Glass sponges and bilaterian animals share derived mitochondrial genomic features: A common ancestry or parallel evolution? Mol. Biol. Evol. 24: 1518-1527.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1518-1527
-
-
Haen, K.M.1
Lang, B.F.2
Pomponi, S.A.3
Lavrov, D.V.4
-
32
-
-
3242702091
-
The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes
-
Helfenbein, K.G. and H.M. Fourcade, R.G. Vanjani, and J.L. Boore. 2004. The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Proc. Natl. Acad. Sci. USA 101: 10639-10643.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 10639-10643
-
-
Helfenbein, K.G.1
Fourcade, H.M.2
Vanjani, R.G.3
Boore, J.L.4
-
33
-
-
33645574750
-
No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation
-
Hellberg, M.E. 2006. No variation and low synonymous substitution rates in coral mtDNA despite high nuclear variation. BMC Evol. Biol. 6: 24.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 24
-
-
Hellberg, M.E.1
-
34
-
-
0000084234
-
A framework for the quantitative study of evolutionary trees
-
Hendy, M.D. and D. Penny. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38: 297-309.
-
(1989)
Syst. Zool.
, vol.38
, pp. 297-309
-
-
Hendy, M.D.1
Penny, D.2
-
35
-
-
0024292930
-
Nucleotide sequence and gene organization of sea urchin mitochondrial DNA
-
Jacobs, H.T. and D.J. Elliott, V.B. Math, and A. Farquharson. 1988. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J. Mol. Biol. 202: 185-217.
-
(1988)
J. Mol. Biol.
, vol.202
, pp. 185-217
-
-
Jacobs, H.T.1
Elliott, D.J.2
Math, V.B.3
Farquharson, A.4
-
36
-
-
40649123235
-
The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny
-
Kayal, E. and D.V. Lavrov. 2008. The mitochondrial genome of Hydra oligactis (Cnidaria, Hydrozoa) sheds new light on animal mtDNA evolution and cnidarian phylogeny. Gene 410: 177-186.
-
(2008)
Gene
, vol.410
, pp. 177-186
-
-
Kayal, E.1
Lavrov, D.V.2
-
37
-
-
0035909922
-
A receptor tyrosine kinase from choanoflagellates: Molecular insights into early animal evolution
-
King, N. and S.B. Carroll. 2001. A receptor tyrosine kinase from choanoflagellates: molecular insights into early animal evolution. Proc. Natl. Acad. Sci. USA 98: 15032-15037.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 15032-15037
-
-
King, N.1
Carroll, S.B.2
-
39
-
-
0033367329
-
Mitochondrial genome evolution and the origin of eukaryotes
-
Lang, B.F. and M.W. Gray, and G. Burger. 1999. Mitochondrial genome evolution and the origin of eukaryotes. Annu. Rev. Genet. 33: 351-397.
-
(1999)
Annu. Rev. Genet.
, vol.33
, pp. 351-397
-
-
Lang, B.F.1
Gray, M.W.2
Burger, G.3
-
40
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
Lartillot, N. and H. Philippe. 2004. A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol. Biol. Evol. 21: 1095-1109.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
41
-
-
0034610287
-
A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus
-
Lavrov, D.V. and W.M. Brown, and J.L. Boore. 2000. A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus. Proc. Natl. Acad. Sci. USA 97: 13738-13742.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 13738-13742
-
-
Lavrov, D.V.1
Brown, W.M.2
Boore, J.L.3
-
42
-
-
0035109373
-
Trichinella spiralis mtDNA: A nematode mitochondrial genome that encodes a putative ATP8, normally-structured tRNAs, and has a gene arrangement relatable to those of coelomate metazoans
-
Lavrov, D.V. and W.M. Brown. 2001. Trichinella spiralis mtDNA: A nematode mitochondrial genome that encodes a putative ATP8, normally-structured tRNAs, and has a gene arrangement relatable to those of coelomate metazoans. Genetics 157: 621-637.
-
(2001)
Genetics
, vol.157
, pp. 621-637
-
-
Lavrov, D.V.1
Brown, W.M.2
-
43
-
-
17744381377
-
Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution
-
Lavrov, D.V. and L. Forget, M. Kelly, and B.F. Lang. 2005. Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution. Mol. Biol. Evol. 22: 1231-1239.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1231-1239
-
-
Lavrov, D.V.1
Forget, L.2
Kelly, M.3
Lang, B.F.4
-
44
-
-
25144447548
-
Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements
-
Lavrov, D.V. and B.F. Lang. 2005a. Poriferan mtDNA and animal phylogeny based on mitochondrial gene arrangements. Syst. Biol. 54: 651-659.
-
(2005)
Syst. Biol.
, vol.54
, pp. 651-659
-
-
Lavrov, D.V.1
Lang, B.F.2
-
45
-
-
13944278871
-
Transfer RNA gene recruitment in mitochondrial DNA
-
Lavrov, D.V. and B.F. Lang. 2005b. Transfer RNA gene recruitment in mitochondrial DNA. Trends Genet. 21: 129-133.
-
(2005)
Trends Genet.
, vol.21
, pp. 129-133
-
-
Lavrov, D.V.1
Lang, B.F.2
-
46
-
-
50249083666
-
Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data
-
Lavrov, D.V. and M. Kelly, and X. Wang. 2008. Reconstructing ordinal relationships in the Demospongiae using mitochondrial genomic data. Mol. Phylogenet. Evol. 49: 111-124.
-
(2008)
Mol. Phylogenet. Evol.
, vol.49
, pp. 111-124
-
-
Lavrov, D.V.1
Kelly, M.2
Wang, X.3
-
47
-
-
33645214213
-
Mutation pressure and the evolution of organelle genomic architecture
-
Lynch, M. and B. Koskella, and S. Schaack. 2006. Mutation pressure and the evolution of organelle genomic architecture. Science 311: 1727-1730.
-
(2006)
Science
, vol.311
, pp. 1727-1730
-
-
Lynch, M.1
Koskella, B.2
Schaack, S.3
-
48
-
-
1642273215
-
Choanoflagellates, choanocytes, and animal multicellularity
-
Maldonado, M. 2004. Choanoflagellates, choanocytes, and animal multicellularity. Invertebr. Biol. 123: 1-22.
-
(2004)
Invertebr. Biol.
, vol.123
, pp. 1-22
-
-
Maldonado, M.1
-
49
-
-
0036792830
-
tRNomics: Analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domainspecific features
-
Marck, C. and H. Grosjean. 2002. tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domainspecific features. RNA 8: 1189-1232.
-
(2002)
RNA
, vol.8
, pp. 1189-1232
-
-
Marck, C.1
Grosjean, H.2
-
50
-
-
0032516147
-
Gene transfer to the nucleus and the evolution of chloroplasts
-
Martin, W. and B. Stoebe, V. Goremykin, S. Hapsmann, M. Hasegawa, and K.V. Kowallik. 1998. Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393: 162-165.
-
(1998)
Nature
, vol.393
, pp. 162-165
-
-
Martin, W.1
Stoebe, B.2
Goremykin, V.3
Hapsmann, S.4
Hasegawa, M.5
Kowallik, K.V.6
-
51
-
-
33745136089
-
Naked corals: Skeleton loss in Scleractinia
-
Medina, M. and A.G. Collins, T.L. Takaoka, J.V. Kuehl, and J.L. Boore. 2006. Naked corals: skeleton loss in Scleractinia. Proc. Natl. Acad. Sci. USA 103: 9096-9100.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 9096-9100
-
-
Medina, M.1
Collins, A.G.2
Takaoka, T.L.3
Kuehl, J.V.4
Boore, J.L.5
-
52
-
-
19544394896
-
Reconstructing phylogenies from gene-content and gene-order data
-
O. Gascuel. [ed.], Clarendon Press, Oxford
-
Moret, B.M. and J. Tang, and T. Warnow. Reconstructing phylogenies from gene-content and gene-order data. pp. 1-32. In: O. Gascuel. [ed.] 2004. Mathematics of Evolution and Phylogeny. Clarendon Press, Oxford.
-
(2004)
Mathematics of Evolution and Phylogeny
, pp. 1-32
-
-
Moret, B.M.1
Tang, J.2
Warnow, T.3
-
53
-
-
0023734317
-
Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification
-
Muramatsu, T. and K. Nishikawa, F. Nemoto, Y. Kuchino, S. Nishimura, T. Miyazawa, and S. Yokoyama. 1988. Codon and amino-acid specificities of a transfer RNA are both converted by a single post-transcriptional modification. Nature 336: 179-181.
-
(1988)
Nature
, vol.336
, pp. 179-181
-
-
Muramatsu, T.1
Nishikawa, K.2
Nemoto, F.3
Kuchino, Y.4
Nishimura, S.5
Miyazawa, T.6
Yokoyama, S.7
-
54
-
-
0029069973
-
A coral mitochondrial mutS gene
-
Pont-Kingdon, G.A. and N.A. Okada, J.L. Macfarlane, C.T. Beagley, D.R. Wolstenholme, T. Cavalier-Smith, and G.D. Clark-Walker. 1995. A coral mitochondrial mutS gene. Nature 375: 109-111.
-
(1995)
Nature
, vol.375
, pp. 109-111
-
-
Pont-Kingdon, G.A.1
Okada, N.A.2
Macfarlane, J.L.3
Beagley, C.T.4
Wolstenholme, D.R.5
Cavalier-Smith, T.6
Clark-Walker, G.D.7
-
55
-
-
0031979635
-
Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: A possible case of gene transfer from the nucleus to the mitochondrion
-
Pont-Kingdon, G. and N.A. Okada, J.L. Macfarlane, C.T. Beagley, C.D. Watkins-Sims, T. Cavalier-Smith, G.D. Clark-Walker, and D.R. Wolstenholme. 1998. Mitochondrial DNA of the coral Sarcophyton glaucum contains a gene for a homologue of bacterial MutS: a possible case of gene transfer from the nucleus to the mitochondrion. J. Mol. Evol. 46: 419-431.
-
(1998)
J. Mol. Evol.
, vol.46
, pp. 419-431
-
-
Pont-Kingdon, G.1
Okada, N.A.2
Macfarlane, J.L.3
Beagley, C.T.4
Watkins-Sims, C.D.5
Cavalier-Smith, T.6
Clark-Walker, G.D.7
Wolstenholme, D.R.8
-
56
-
-
0022847444
-
Large mitochondrial genome and mitochondrial DNA size polymorphism in the mosquito parasite, Romanomermis culicivorax
-
Powers, T.O. and E.G. Platzer, and B.C. Hyman. 1986. Large mitochondrial genome and mitochondrial DNA size polymorphism in the mosquito parasite, Romanomermis culicivorax. Curr. Genet. 11: 71-77.
-
(1986)
Curr. Genet.
, vol.11
, pp. 71-77
-
-
Powers, T.O.1
Platzer, E.G.2
Hyman, B.C.3
-
57
-
-
40549134511
-
The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: Evidence for programmed translational frameshifting
-
Rosengarten, R.D. and E.A. Sperling, M.A. Moreno, S.P. Leys, and S.L. Dellaporta. 2008. The mitochondrial genome of the hexactinellid sponge Aphrocallistes vastus: evidence for programmed translational frameshifting. BMC Genomics 9: 33.
-
(2008)
BMC Genomics
, vol.9
, pp. 33
-
-
Rosengarten, R.D.1
Sperling, E.A.2
Moreno, M.A.3
Leys, S.P.4
Dellaporta, S.L.5
-
58
-
-
33750223973
-
Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria
-
Rot, C. and I. Goldfarb, M. Ilan, and D. Huchon. 2006. Putative cross-kingdom horizontal gene transfer in sponge (Porifera) mitochondria. BMC Evol. Biol. 6: 71.
-
(2006)
BMC Evol. Biol.
, vol.6
, pp. 71
-
-
Rot, C.1
Goldfarb, I.2
Ilan, M.3
Huchon, D.4
-
59
-
-
33748919994
-
Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): A linear DNA molecule encoding a putative DNA-dependent DNA polymerase
-
Shao, Z. and S. Graf, O.Y. Chaga, and D.V. Lavrov. 2006. Mitochondrial genome of the moon jelly Aurelia aurita (Cnidaria, Scyphozoa): A linear DNA molecule encoding a putative DNA-dependent DNA polymerase. Gene 381: 92-101.
-
(2006)
Gene
, vol.381
, pp. 92-101
-
-
Shao, Z.1
Graf, S.2
Chaga, O.Y.3
Lavrov, D.V.4
-
60
-
-
0036897723
-
Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria)
-
Shearer, T.L. and M.J. Van Oppen, S.L. Romano, and G. Worheide. 2002. Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Mol. Ecol. 11: 2475-2487.
-
(2002)
Mol. Ecol.
, vol.11
, pp. 2475-2487
-
-
Shearer, T.L.1
Van Oppen, M.J.2
Romano, S.L.3
Worheide, G.4
-
61
-
-
33846557231
-
Comparative genomics of large mitochondria in placozoans
-
Signorovitch, A.Y. and L.W. Buss, and S.L. Dellaporta. 2007. Comparative genomics of large mitochondria in placozoans. PLoS Genet. 3: e13.
-
(2007)
PLoS Genet.
, vol.3
, pp. e13
-
-
Signorovitch, A.Y.1
Buss, L.W.2
Dellaporta, S.L.3
-
62
-
-
33846443616
-
Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny
-
Sinniger, F. and P. Chevaldonne, and J. Pawlowski. 2007. Mitochondrial genome of Savalia savaglia (Cnidaria, Hexacorallia) and early metazoan phylogeny. J. Mol. Evol. 64: 196-203.
-
(2007)
J. Mol. Evol.
, vol.64
, pp. 196-203
-
-
Sinniger, F.1
Chevaldonne, P.2
Pawlowski, J.3
-
63
-
-
0014414329
-
N-formylmethionyl transfer RNA in mitochondria from yeast and rat liver
-
Smith, A.E. and K.A. Marcker. 1968. N-formylmethionyl transfer RNA in mitochondria from yeast and rat liver. J. Mol. Biol. 38: 241-243.
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 241-243
-
-
Smith, A.E.1
Marcker, K.A.2
-
64
-
-
85018193988
-
Atypical mitochondrial DNA from the deep-sea scallop Placopecten magellanicus
-
Snyder, M. and A.R. Fraser, J. Laroche, K.E. Gartner-Kepkay, and E. Zouros. 1987. Atypical mitochondrial DNA from the deep-sea scallop Placopecten magellanicus. Proc. Natl. Acad. Sci. USA 84: 7595-7599.
-
(1987)
Proc. Natl. Acad. Sci. USA
, vol.84
, pp. 7595-7599
-
-
Snyder, M.1
Fraser, A.R.2
Laroche, J.3
Gartner-Kepkay, K.E.4
Zouros, E.5
-
65
-
-
10744229752
-
An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA
-
Soma, A. and Y. Ikeuchi, S. Kanemasa, K. Kobayashi, N. Ogasawara, T. Ote, J. Kato, K. Watanabe, Y. Sekine, and T. Suzuki. 2003. An RNA-modifying enzyme that governs both the codon and amino acid specificities of isoleucine tRNA. Mol. Cell. 12: 689-698.
-
(2003)
Mol. Cell.
, vol.12
, pp. 689-698
-
-
Soma, A.1
Ikeuchi, Y.2
Kanemasa, S.3
Kobayashi, K.4
Ogasawara, N.5
Ote, T.6
Kato, J.7
Watanabe, K.8
Sekine, Y.9
Suzuki, T.10
-
66
-
-
44649188614
-
Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis
-
Suga, K. and D.B. Mark Welch, Y. Tanaka, Y. Sakakura, and A. Hagiwara. 2008. Two circular chromosomes of unequal copy number make up the mitochondrial genome of the rotifer Brachionus plicatilis. Mol. Biol. Evol. 25: 1129-1137.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1129-1137
-
-
Suga, K.1
Mark Welch, D.B.2
Tanaka, Y.3
Sakakura, Y.4
Hagiwara, A.5
-
67
-
-
44949111473
-
Group II introns break new boundaries: Presence in a bilaterian’s genome
-
Valles, Y. and K.M. Halanych, and J.L. Boore. 2008. Group II introns break new boundaries: presence in a bilaterian’s genome. PLoS ONE 3: e1488.
-
(2008)
PLoS ONE
, vol.3
, pp. e1488
-
-
Valles, Y.1
Halanych, K.M.2
Boore, J.L.3
-
68
-
-
0036017377
-
The mitochondrial genome of Acropora tenuis (Cnidaria; Scleractinia) contains a large group I intron and a candidate control region
-
van Oppen, M.J. and J. Catmull, B.J. McDonald, N.R. Hislop, P.J. Hagerman, and D.J. Miller. 2002. The mitochondrial genome of Acropora tenuis (Cnidaria; Scleractinia) contains a large group I intron and a candidate control region. J. Mol. Evol. 55: 1-13.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 1-13
-
-
van Oppen, M.J.1
Catmull, J.2
McDonald, B.J.3
Hislop, N.R.4
Hagerman, P.J.5
Miller, D.J.6
-
69
-
-
0020287141
-
Structure and evolution of organelle genomes
-
Wallace, D.C. 1982. Structure and evolution of organelle genomes. Microbiol. Rev. 46: 208-240.
-
(1982)
Microbiol. Rev.
, vol.46
, pp. 208-240
-
-
Wallace, D.C.1
-
70
-
-
0036372455
-
Fast phylogenetic methods for the analysis of genome rearrangement data: An empirical study
-
Wang, L.S. and R.K. Jansen, B.M. Moret, L.A. Raubeson, and T. Warnow. 2002. Fast phylogenetic methods for the analysis of genome rearrangement data: an empirical study. Proc. 7th Pacific Symp. on Biocomputing (PSB’02) 524-535.
-
(2002)
Proc. 7th Pacific Symp. on Biocomputing (PSB’02)
, pp. 524-535
-
-
Wang, L.S.1
Jansen, R.K.2
Moret, B.M.3
Raubeson, L.A.4
Warnow, T.5
-
71
-
-
33846820322
-
Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals
-
Wang, X. and D.V. Lavrov. 2007. Mitochondrial genome of the homoscleromorph Oscarella carmela (Porifera, Demospongiae) reveals unexpected complexity in the common ancestor of sponges and other animals. Mol. Biol. Evol. 24: 363-373.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 363-373
-
-
Wang, X.1
Lavrov, D.V.2
-
72
-
-
50249139663
-
Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae
-
Wang, X. and D.V. Lavrov. 2008. Seventeen new complete mtDNA sequences reveal extensive mitochondrial genome evolution within the Demospongiae. PLoS ONE 3: e2723.
-
(2008)
PLoS ONE
, vol.3
, pp. e2723
-
-
Wang, X.1
Lavrov, D.V.2
-
73
-
-
0025182710
-
A potato mitochondrial isoleucine tRNA is coded for by a mitochondrial gene possessing a methionine anticodon
-
Weber, F. and A. Dietrich, J.H. Weil, and L. Maréchal-Drouard. 1990. A potato mitochondrial isoleucine tRNA is coded for by a mitochondrial gene possessing a methionine anticodon. Nucleic Acids Res. 18: 5027-5030.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 5027-5030
-
-
Weber, F.1
Dietrich, A.2
Weil, J.H.3
Maréchal-Drouard, L.4
-
74
-
-
0027083319
-
Animal mitochondrial DNA: Structure and evolution
-
Wolstenholme, D.R. 1992a. Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141: 173-216.
-
(1992)
Int. Rev. Cytol.
, vol.141
, pp. 173-216
-
-
Wolstenholme, D.R.1
-
75
-
-
0027014050
-
Genetic novelties in mitochondrial genomes of multicellular animals
-
Wolstenholme, D.R. 1992b. Genetic novelties in mitochondrial genomes of multicellular animals. Curr. Opin. Genet. Dev. 2: 918-925.
-
(1992)
Curr. Opin. Genet. Dev.
, vol.2
, pp. 918-925
-
-
Wolstenholme, D.R.1
-
76
-
-
33344477602
-
Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific
-
Wörheide, G. 2006. Low variation in partial cytochrome oxidase subunit I (COI) mitochondrial sequences in the coralline demosponge Astrosclera willeyana across the Indo-Pacific. Mar. Biol. 148: 907-912.
-
(2006)
Mar. Biol.
, vol.148
, pp. 907-912
-
-
Wörheide, G.1
-
77
-
-
0031575418
-
Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA(Tyr)
-
Yokobori, S. and S. Pääbo. 1997. Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA(Tyr). J. Mol. Biol. 265: 95-99.
-
(1997)
J. Mol. Biol.
, vol.265
, pp. 95-99
-
-
Yokobori, S.1
Pääbo, S.2
|