-
1
-
-
77956727495
-
Recent progress and new challenges in metagenomics for biotechnology
-
PMID: 20495950
-
Chistoserdova L. Recent progress and new challenges in metagenomics for biotechnology. Biotechnol Lett. 2010; 32(10):1351–9. https://doi.org/10.1007/s10529-010-0306-9 PMID: 20495950.
-
(2010)
Biotechnol Lett
, vol.32
, Issue.10
, pp. 1351-1359
-
-
Chistoserdova, L.1
-
2
-
-
84962241562
-
Integrated (meta) genomic and synthetic biology approaches to develop new biocatalysts
-
Parages ML, Gutiérrez-Barranquero JA, Reen FJ, Dobson AD, O’Gara F. Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts. Marine drugs. 2016; 14(3):62.
-
(2016)
Marine Drugs
, vol.14
, Issue.3
, pp. 62
-
-
Parages, M.L.1
Gutiérrez-Barranquero, J.A.2
Reen, F.J.3
Dobson, A.D.4
O’Gara, F.5
-
3
-
-
85042777904
-
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
-
PMID: 29491419; PubMed Central PMCID: PMCPMC5830445
-
Stewart RD, Auffret MD, Warr A, Wiser AH, Press MO, Langford KW, et al. Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen. Nat Commun. 2018; 9(1):870. https://doi.org/10.1038/s41467-018-03317-6 PMID: 29491419; PubMed Central PMCID: PMCPMC5830445.
-
(2018)
Nat Commun
, vol.9
, Issue.1
, pp. 870
-
-
Stewart, R.D.1
Auffret, M.D.2
Warr, A.3
Wiser, A.H.4
Press, M.O.5
Langford, K.W.6
-
4
-
-
78349308978
-
Metagenomic era for biocatalyst identification
-
PMID: 20934867
-
Fernandez-Arrojo L, Guazzaroni ME, Lopez-Cortes N, Beloqui A, Ferrer M. Metagenomic era for biocatalyst identification. Curr Opin Biotechnol. 2010; 21(6):725–33. https://doi.org/10.1016/j.copbio.2010.09.006 PMID: 20934867.
-
(2010)
Curr Opin Biotechnol
, vol.21
, Issue.6
, pp. 725-733
-
-
Fernandez-Arrojo, L.1
Guazzaroni, M.E.2
Lopez-Cortes, N.3
Beloqui, A.4
Ferrer, M.5
-
5
-
-
84953361752
-
Estimating the success of enzyme bioprospecting through metagenomics: Current status and future trends
-
PMID: 26275154
-
Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN. Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends. Microbial biotechnology. 2016; 9(1):22–34. https://doi.org/10.1111/1751-7915.12309 PMID: 26275154
-
(2016)
Microbial Biotechnology
, vol.9
, Issue.1
, pp. 22-34
-
-
Ferrer, M.1
Martínez-Martínez, M.2
Bargiela, R.3
Streit, W.R.4
Golyshina, O.V.5
Golyshin, P.N.6
-
6
-
-
84978897605
-
Characterization of three plant biomass-degrading microbial consortia by metagenomics-and metasecretomics-based approaches
-
Jiménez DJ, de Lima Brossi MJ, Schückel J, Kračun SK, Willats WGT, van Elsas JD. Characterization of three plant biomass-degrading microbial consortia by metagenomics-and metasecretomics-based approaches. Applied Microbiology and Biotechnology. 2016:1–15.
-
(2016)
Applied Microbiology and Biotechnology
, pp. 1-15
-
-
Jiménez, D.J.1
de Lima Brossi, M.J.2
Schückel, J.3
Kračun, S.K.4
Willats, W.G.T.5
van Elsas, J.D.6
-
7
-
-
84922032029
-
Genomic potential for polysaccharide deconstruction in bacteria
-
PMID: 25527556
-
Berlemont R, Martiny AC. Genomic potential for polysaccharide deconstruction in bacteria. Applied and environmental microbiology. 2015; 81(4):1513–9. https://doi.org/10.1128/AEM.03718-14 PMID: 25527556
-
(2015)
Applied and Environmental Microbiology
, vol.81
, Issue.4
, pp. 1513-1519
-
-
Berlemont, R.1
Martiny, A.C.2
-
8
-
-
85007575525
-
Glycoside hydrolases across environmental microbial communities
-
PMID: 27992426
-
Berlemont R, Martiny AC. Glycoside Hydrolases across Environmental Microbial Communities. PLOS Computational Biology. 2016; 12(12):e1005300. https://doi.org/10.1371/journal.pcbi.1005300 PMID: 27992426
-
(2016)
PLOS Computational Biology
, vol.12
, Issue.12
-
-
Berlemont, R.1
Martiny, A.C.2
-
10
-
-
85039767182
-
Structural considerations on the use of endo-xylanases for the production of prebiotic xylooligosaccharides from biomass
-
PMID: 27670134
-
Linares-Pasten JA, Aronsson A, Karlsson EN. Structural Considerations on the Use of Endo-Xylanases for the Production of prebiotic Xylooligosaccharides from Biomass. Curr Protein Pept Sci. 2018; 19 (1):48–67. https://doi.org/10.2174/1389203717666160923155209 PMID: 27670134.
-
(2018)
Curr Protein Pept Sci
, vol.19
, Issue.1
, pp. 48-67
-
-
Linares-Pasten, J.A.1
Aronsson, A.2
Karlsson, E.N.3
-
11
-
-
85053258179
-
Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
-
PMID: 30086128
-
Van Deynze A, Zamora P, Delaux P-M, Heitmann C, Jayaraman D, Rajasekar S, et al. Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. PLoS biology. 2018; 16(8):e2006352. https://doi.org/10.1371/journal.pbio.2006352 PMID: 30086128
-
(2018)
PLoS Biology
, vol.16
, Issue.8
-
-
Van Deynze, A.1
Zamora, P.2
Delaux, P.-M.3
Heitmann, C.4
Jayaraman, D.5
Rajasekar, S.6
-
12
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard V, Ramulu HG, Drula E, Coutinho PM, Henrissat B. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic acids research. 2014; 42(D1):D490–D5.
-
(2014)
Nucleic Acids Research
, vol.42
, Issue.D1
, pp. D490-D495
-
-
Lombard, V.1
Ramulu, H.G.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
13
-
-
80053651587
-
GenBank
-
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, et al. GenBank. Nucleic acids research. 2012; 41(D1):D36–D42.
-
(2012)
Nucleic Acids Research
, vol.41
, Issue.D1
, pp. D36-D42
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
-
14
-
-
84925558708
-
Determination of microbial extracellular enzyme activity in waters, soils, and sediments using high throughput microplate assays
-
PMID: 24121617; PubMed Central PMCID: PMCPMC3938205
-
Jackson CR, Tyler HL, Millar JJ. Determination of microbial extracellular enzyme activity in waters, soils, and sediments using high throughput microplate assays. J Vis Exp. 2013;(80). https://doi.org/10.3791/50399 PMID: 24121617; PubMed Central PMCID: PMCPMC3938205.
-
(2013)
J Vis Exp
, vol.80
-
-
Jackson, C.R.1
Tyler, H.L.2
Millar, J.J.3
-
15
-
-
84880998430
-
Structural studies of an exopolysaccharide produced by Gluconacetobacter diazotrophicus Pal5
-
PMID: 23987457
-
Serrato RV, Meneses CH, Vidal MS, Santana-Filho AP, Iacomini M, Sassaki GL, et al. Structural studies of an exopolysaccharide produced by Gluconacetobacter diazotrophicus Pal5. Carbohydr Polym. 2013; 98(1):1153–9. https://doi.org/10.1016/j.carbpol.2013.07.025 PMID: 23987457.
-
(2013)
Carbohydr Polym
, vol.98
, Issue.1
, pp. 1153-1159
-
-
Serrato, R.V.1
Meneses, C.H.2
Vidal, M.S.3
Santana-Filho, A.P.4
Iacomini, M.5
Sassaki, G.L.6
-
16
-
-
85054075323
-
Produção, extração e quantificação de exopolissacarídeos sintetizados por G. diazotrophicus PAL5T em meio de cultivo líquido
-
de MENESES CHSG, Serrato RV, Rouws LFM, de Araújo JLS, Vidal MS, Baldani JI. Produção, extração e quantificação de exopolissacarídeos sintetizados por G. diazotrophicus PAL5T em meio de cultivo líquido. Embrapa Agrobiologia-Comunicado Técnico (INFOTECA-E). 2009.
-
(2009)
Embrapa Agrobiologia-Comunicado Técnico (INFOTECA-E)
-
-
de Meneses, C.H.S.G.1
Serrato, R.V.2
Rouws, L.F.M.3
de Araújo, J.L.S.4
Vidal, M.S.5
Baldani, J.I.6
-
18
-
-
77953192750
-
A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies
-
PMID: 20363856; PubMed Central PMCID: PMCPMC2879786
-
Pattathil S, Avci U, Baldwin D, Swennes AG, McGill JA, Popper Z, et al. A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies. Plant Physiol. 2010; 153(2):514–25. https://doi.org/10.1104/pp.109.151985 PMID: 20363856; PubMed Central PMCID: PMCPMC2879786.
-
(2010)
Plant Physiol
, vol.153
, Issue.2
, pp. 514-525
-
-
Pattathil, S.1
Avci, U.2
Baldwin, D.3
Swennes, A.G.4
McGill, J.A.5
Popper, Z.6
-
19
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
PMID: 22388286
-
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature methods. 2012; 9 (4):357–9. https://doi.org/10.1038/nmeth.1923 PMID: 22388286
-
(2012)
Nature Methods
, vol.9
, Issue.4
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
20
-
-
84861760530
-
IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
-
PMID: 22495754
-
Peng Y, Leung HC, Yiu S-M, Chin FY. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics. 2012; 28(11):1420–8. https://doi.org/10.1093/bioinformatics/bts174 PMID: 22495754
-
(2012)
Bioinformatics
, vol.28
, Issue.11
, pp. 1420-1428
-
-
Peng, Y.1
Leung, H.C.2
Yiu, S.-M.3
Chin, F.Y.4
-
21
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic acids research. 2006; 35(suppl_1): D61–D5.
-
(2006)
Nucleic Acids Research
, vol.35
, pp. D61-D65
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
22
-
-
9144232912
-
Uniprot: The universal protein knowledgebase
-
Apweiler R, Bairoch A, Wu CH, Barker WC, Boeckmann B, Ferro S, et al. UniProt: the universal protein knowledgebase. Nucleic acids research. 2004; 32(suppl_1):D115–D9.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. D115-D119
-
-
Apweiler, R.1
Bairoch, A.2
Wu, C.H.3
Barker, W.C.4
Boeckmann, B.5
Ferro, S.6
-
23
-
-
85043366374
-
Firefly luciferase mutant with enhanced activity and thermostability
-
PMID: 30023842
-
Pozzo T, Akter F, Nomura Y, Louie AY, Yokobayashi Y. Firefly Luciferase Mutant with Enhanced Activity and Thermostability. ACS Omega. 2018; 3(3):2628–33. https://doi.org/10.1021/acsomega.7b02068 PMID: 30023842
-
(2018)
ACS Omega
, vol.3
, Issue.3
, pp. 2628-2633
-
-
Pozzo, T.1
Akter, F.2
Nomura, Y.3
Louie, A.Y.4
Yokobayashi, Y.5
-
24
-
-
85031508996
-
Feed your friends: Do plant exudates shape the root microbiome?
-
PMID: 29050989
-
Sasse J, Martinoia E, Northen T. Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends Plant Sci. 2018; 23(1):25–41. https://doi.org/10.1016/j.tplants.2017.09.003 PMID: 29050989.
-
(2018)
Trends Plant Sci
, vol.23
, Issue.1
, pp. 25-41
-
-
Sasse, J.1
Martinoia, E.2
Northen, T.3
-
25
-
-
85033778869
-
A synthetic glycan microarray enables epitope mapping of plant cell wall glycan-directed antibodies
-
PMID: 28924016
-
Ruprecht C, Bartetzko MP, Senf D, Dallabernadina P, Boos I, Andersen MC, et al. A synthetic glycan microarray enables epitope mapping of plant cell wall glycan-directed antibodies. Plant physiology. 2017; 175(3):1094–104. https://doi.org/10.1104/pp.17.00737 PMID: 28924016
-
(2017)
Plant Physiology
, vol.175
, Issue.3
, pp. 1094-1104
-
-
Ruprecht, C.1
Bartetzko, M.P.2
Senf, D.3
Dallabernadina, P.4
Boos, I.5
Andersen, M.C.6
-
26
-
-
84874521081
-
An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein
-
PMID: 23371948; PubMed Central PMCID: PMCPMC3584541
-
Tan L, Eberhard S, Pattathil S, Warder C, Glushka J, Yuan C, et al. An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein. Plant Cell. 2013; 25(1):270–87. https://doi.org/10.1105/tpc.112.107334 PMID: 23371948; PubMed Central PMCID: PMCPMC3584541.
-
(2013)
Plant Cell
, vol.25
, Issue.1
, pp. 270-287
-
-
Tan, L.1
Eberhard, S.2
Pattathil, S.3
Warder, C.4
Glushka, J.5
Yuan, C.6
-
27
-
-
84891804612
-
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
-
Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic acids research. 2013; 42 (D1):D206–D14.
-
(2013)
Nucleic Acids Research
, vol.42
, Issue.D1
, pp. D206-D214
-
-
Overbeek, R.1
Olson, R.2
Pusch, G.D.3
Olsen, G.J.4
Davis, J.J.5
Disz, T.6
-
28
-
-
84906945206
-
Root microbiome relates to plant host evolution in maize and other Poaceae
-
PMID: 24588973
-
Bouffaud ML, Poirier MA, Muller D, Moënne-Loccoz Y. Root microbiome relates to plant host evolution in maize and other Poaceae. Environmental microbiology. 2014; 16(9):2804–14. https://doi.org/10.1111/1462-2920.12442 PMID: 24588973
-
(2014)
Environmental Microbiology
, vol.16
, Issue.9
, pp. 2804-2814
-
-
Bouffaud, M.L.1
Poirier, M.A.2
Muller, D.3
Moënne-Loccoz, Y.4
-
29
-
-
84884613513
-
Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism
-
PMID: 24086761; PubMed Central PMCID: PMCPMC3784431
-
Kolton M, Sela N, Elad Y, Cytryn E. Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism. PLoS One. 2013; 8(9):e76704. https://doi.org/10.1371/journal.pone.0076704 PMID: 24086761; PubMed Central PMCID: PMCPMC3784431.
-
(2013)
PLoS One
, vol.8
, Issue.9
-
-
Kolton, M.1
Sela, N.2
Elad, Y.3
Cytryn, E.4
-
30
-
-
85038392797
-
Genomic features of bacterial adaptation to plants
-
PMID: 29255260
-
Levy A, Salas Gonzalez I, Mittelviefhaus M, Clingenpeel S, Herrera Paredes S, Miao J, et al. Genomic features of bacterial adaptation to plants. Nature Genetics. 2017. https://doi.org/10.1038/s41588-017-0012-9 PMID: 29255260
-
(2017)
Nature Genetics
-
-
Levy, A.1
Salas Gonzalez, I.2
Mittelviefhaus, M.3
Clingenpeel, S.4
Herrera Paredes, S.5
Miao, J.6
-
31
-
-
0034652374
-
Purification, characterization and gene cloning of two alpha-L-arabinofuranosidases from Streptomyces chartreusis GS901
-
Matsuo N, Kaneko S, Kuno A, Kobayashi H, Kusakabe I. Purification, characterization and gene cloning of two alpha-L-arabinofuranosidases from streptomyces chartreusis GS901. Biochemical Journal. 2000; 346(Pt 1):9.
-
(2000)
Biochemical Journal
, vol.346
, pp. 9
-
-
Matsuo, N.1
Kaneko, S.2
Kuno, A.3
Kobayashi, H.4
Kusakabe, I.5
-
32
-
-
84958191367
-
Novel alpha-L-fucosidases from a soil metagenome for production of fucosylated human milk oligosaccharides
-
PMID: 26800369; PubMed Central PMCID: PMCPMC4723247
-
Lezyk M, Jers C, Kjaerulff L, Gotfredsen CH, Mikkelsen MD, Mikkelsen JD. Novel alpha-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides. PLoS One. 2016; 11(1):e0147438. https://doi.org/10.1371/journal.pone.0147438 PMID: 26800369; PubMed Central PMCID: PMCPMC4723247.
-
(2016)
PLoS One
, vol.11
, Issue.1
-
-
Lezyk, M.1
Jers, C.2
Kjaerulff, L.3
Gotfredsen, C.H.4
Mikkelsen, M.D.5
Mikkelsen, J.D.6
-
33
-
-
34249725565
-
Mannose foraging by Bacteroides thetaiotaomicron: Structure and specificity of the beta-mannosidase, BtMan2A
-
PMID: 17287210
-
Tailford LE, Money VA, Smith NL, Dumon C, Davies GJ, Gilbert HJ. Mannose foraging by Bacteroides thetaiotaomicron: structure and specificity of the beta-mannosidase, BtMan2A. J Biol Chem. 2007; 282 (15):11291–9. https://doi.org/10.1074/jbc.M610964200 PMID: 17287210.
-
(2007)
J Biol Chem
, vol.282
, Issue.15
, pp. 11291-11299
-
-
Tailford, L.E.1
Money, V.A.2
Smith, N.L.3
Dumon, C.4
Davies, G.J.5
Gilbert, H.J.6
-
34
-
-
84912572529
-
Expression of a beta-mannosidase from Paenibacillus polymyxa A-8 in Escherichia coli and characterization of the recombinant enzyme
-
PMID: 25423086; PubMed Central PMCID: PMCPMC4244029
-
Bai X, Hu H, Chen H, Wei Q, Yang Z, Huang Q. Expression of a beta-mannosidase from Paenibacillus polymyxa A-8 in Escherichia coli and characterization of the recombinant enzyme. PLoS One. 2014; 9 (11):e111622. https://doi.org/10.1371/journal.pone.0111622 PMID: 25423086; PubMed Central PMCID: PMCPMC4244029.
-
(2014)
PLoS One
, vol.9
, Issue.11
-
-
Bai, X.1
Hu, H.2
Chen, H.3
Wei, Q.4
Yang, Z.5
Huang, Q.6
|