메뉴 건너뛰기




Volumn 13, Issue 9, 2018, Pages

Characterization of novel glycosyl hydrolases discovered by cell wall glycan directed monoclonal antibody screening and metagenome analysis of maize aerial root mucilage

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA LEVO FUCOSIDASE; ARABINOFURANOSIDASE; ARABINOGALACTAN; GALACTOSIDASE; GLYCAN; GLYCOSIDASE; MANNOSIDASE; MONOCLONAL ANTIBODY; POLYSACCHARIDE; UNCLASSIFIED DRUG; XYLAN; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLOGLUCAN; BACTERIAL PROTEIN; RECOMBINANT PROTEIN;

EID: 85054062677     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0204525     Document Type: Article
Times cited : (34)

References (34)
  • 1
    • 77956727495 scopus 로고    scopus 로고
    • Recent progress and new challenges in metagenomics for biotechnology
    • PMID: 20495950
    • Chistoserdova L. Recent progress and new challenges in metagenomics for biotechnology. Biotechnol Lett. 2010; 32(10):1351–9. https://doi.org/10.1007/s10529-010-0306-9 PMID: 20495950.
    • (2010) Biotechnol Lett , vol.32 , Issue.10 , pp. 1351-1359
    • Chistoserdova, L.1
  • 3
    • 85042777904 scopus 로고    scopus 로고
    • Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
    • PMID: 29491419; PubMed Central PMCID: PMCPMC5830445
    • Stewart RD, Auffret MD, Warr A, Wiser AH, Press MO, Langford KW, et al. Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen. Nat Commun. 2018; 9(1):870. https://doi.org/10.1038/s41467-018-03317-6 PMID: 29491419; PubMed Central PMCID: PMCPMC5830445.
    • (2018) Nat Commun , vol.9 , Issue.1 , pp. 870
    • Stewart, R.D.1    Auffret, M.D.2    Warr, A.3    Wiser, A.H.4    Press, M.O.5    Langford, K.W.6
  • 5
    • 84953361752 scopus 로고    scopus 로고
    • Estimating the success of enzyme bioprospecting through metagenomics: Current status and future trends
    • PMID: 26275154
    • Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN. Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends. Microbial biotechnology. 2016; 9(1):22–34. https://doi.org/10.1111/1751-7915.12309 PMID: 26275154
    • (2016) Microbial Biotechnology , vol.9 , Issue.1 , pp. 22-34
    • Ferrer, M.1    Martínez-Martínez, M.2    Bargiela, R.3    Streit, W.R.4    Golyshina, O.V.5    Golyshin, P.N.6
  • 7
    • 84922032029 scopus 로고    scopus 로고
    • Genomic potential for polysaccharide deconstruction in bacteria
    • PMID: 25527556
    • Berlemont R, Martiny AC. Genomic potential for polysaccharide deconstruction in bacteria. Applied and environmental microbiology. 2015; 81(4):1513–9. https://doi.org/10.1128/AEM.03718-14 PMID: 25527556
    • (2015) Applied and Environmental Microbiology , vol.81 , Issue.4 , pp. 1513-1519
    • Berlemont, R.1    Martiny, A.C.2
  • 8
    • 85007575525 scopus 로고    scopus 로고
    • Glycoside hydrolases across environmental microbial communities
    • PMID: 27992426
    • Berlemont R, Martiny AC. Glycoside Hydrolases across Environmental Microbial Communities. PLOS Computational Biology. 2016; 12(12):e1005300. https://doi.org/10.1371/journal.pcbi.1005300 PMID: 27992426
    • (2016) PLOS Computational Biology , vol.12 , Issue.12
    • Berlemont, R.1    Martiny, A.C.2
  • 10
    • 85039767182 scopus 로고    scopus 로고
    • Structural considerations on the use of endo-xylanases for the production of prebiotic xylooligosaccharides from biomass
    • PMID: 27670134
    • Linares-Pasten JA, Aronsson A, Karlsson EN. Structural Considerations on the Use of Endo-Xylanases for the Production of prebiotic Xylooligosaccharides from Biomass. Curr Protein Pept Sci. 2018; 19 (1):48–67. https://doi.org/10.2174/1389203717666160923155209 PMID: 27670134.
    • (2018) Curr Protein Pept Sci , vol.19 , Issue.1 , pp. 48-67
    • Linares-Pasten, J.A.1    Aronsson, A.2    Karlsson, E.N.3
  • 11
    • 85053258179 scopus 로고    scopus 로고
    • Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
    • PMID: 30086128
    • Van Deynze A, Zamora P, Delaux P-M, Heitmann C, Jayaraman D, Rajasekar S, et al. Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota. PLoS biology. 2018; 16(8):e2006352. https://doi.org/10.1371/journal.pbio.2006352 PMID: 30086128
    • (2018) PLoS Biology , vol.16 , Issue.8
    • Van Deynze, A.1    Zamora, P.2    Delaux, P.-M.3    Heitmann, C.4    Jayaraman, D.5    Rajasekar, S.6
  • 14
    • 84925558708 scopus 로고    scopus 로고
    • Determination of microbial extracellular enzyme activity in waters, soils, and sediments using high throughput microplate assays
    • PMID: 24121617; PubMed Central PMCID: PMCPMC3938205
    • Jackson CR, Tyler HL, Millar JJ. Determination of microbial extracellular enzyme activity in waters, soils, and sediments using high throughput microplate assays. J Vis Exp. 2013;(80). https://doi.org/10.3791/50399 PMID: 24121617; PubMed Central PMCID: PMCPMC3938205.
    • (2013) J Vis Exp , vol.80
    • Jackson, C.R.1    Tyler, H.L.2    Millar, J.J.3
  • 15
    • 84880998430 scopus 로고    scopus 로고
    • Structural studies of an exopolysaccharide produced by Gluconacetobacter diazotrophicus Pal5
    • PMID: 23987457
    • Serrato RV, Meneses CH, Vidal MS, Santana-Filho AP, Iacomini M, Sassaki GL, et al. Structural studies of an exopolysaccharide produced by Gluconacetobacter diazotrophicus Pal5. Carbohydr Polym. 2013; 98(1):1153–9. https://doi.org/10.1016/j.carbpol.2013.07.025 PMID: 23987457.
    • (2013) Carbohydr Polym , vol.98 , Issue.1 , pp. 1153-1159
    • Serrato, R.V.1    Meneses, C.H.2    Vidal, M.S.3    Santana-Filho, A.P.4    Iacomini, M.5    Sassaki, G.L.6
  • 18
    • 77953192750 scopus 로고    scopus 로고
    • A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies
    • PMID: 20363856; PubMed Central PMCID: PMCPMC2879786
    • Pattathil S, Avci U, Baldwin D, Swennes AG, McGill JA, Popper Z, et al. A comprehensive toolkit of plant cell wall glycan-directed monoclonal antibodies. Plant Physiol. 2010; 153(2):514–25. https://doi.org/10.1104/pp.109.151985 PMID: 20363856; PubMed Central PMCID: PMCPMC2879786.
    • (2010) Plant Physiol , vol.153 , Issue.2 , pp. 514-525
    • Pattathil, S.1    Avci, U.2    Baldwin, D.3    Swennes, A.G.4    McGill, J.A.5    Popper, Z.6
  • 19
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • PMID: 22388286
    • Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature methods. 2012; 9 (4):357–9. https://doi.org/10.1038/nmeth.1923 PMID: 22388286
    • (2012) Nature Methods , vol.9 , Issue.4 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 20
    • 84861760530 scopus 로고    scopus 로고
    • IDBA-UD: A de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
    • PMID: 22495754
    • Peng Y, Leung HC, Yiu S-M, Chin FY. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinformatics. 2012; 28(11):1420–8. https://doi.org/10.1093/bioinformatics/bts174 PMID: 22495754
    • (2012) Bioinformatics , vol.28 , Issue.11 , pp. 1420-1428
    • Peng, Y.1    Leung, H.C.2    Yiu, S.-M.3    Chin, F.Y.4
  • 21
    • 33846057724 scopus 로고    scopus 로고
    • NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
    • Pruitt KD, Tatusova T, Maglott DR. NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic acids research. 2006; 35(suppl_1): D61–D5.
    • (2006) Nucleic Acids Research , vol.35 , pp. D61-D65
    • Pruitt, K.D.1    Tatusova, T.2    Maglott, D.R.3
  • 23
    • 85043366374 scopus 로고    scopus 로고
    • Firefly luciferase mutant with enhanced activity and thermostability
    • PMID: 30023842
    • Pozzo T, Akter F, Nomura Y, Louie AY, Yokobayashi Y. Firefly Luciferase Mutant with Enhanced Activity and Thermostability. ACS Omega. 2018; 3(3):2628–33. https://doi.org/10.1021/acsomega.7b02068 PMID: 30023842
    • (2018) ACS Omega , vol.3 , Issue.3 , pp. 2628-2633
    • Pozzo, T.1    Akter, F.2    Nomura, Y.3    Louie, A.Y.4    Yokobayashi, Y.5
  • 24
    • 85031508996 scopus 로고    scopus 로고
    • Feed your friends: Do plant exudates shape the root microbiome?
    • PMID: 29050989
    • Sasse J, Martinoia E, Northen T. Feed Your Friends: Do Plant Exudates Shape the Root Microbiome? Trends Plant Sci. 2018; 23(1):25–41. https://doi.org/10.1016/j.tplants.2017.09.003 PMID: 29050989.
    • (2018) Trends Plant Sci , vol.23 , Issue.1 , pp. 25-41
    • Sasse, J.1    Martinoia, E.2    Northen, T.3
  • 25
    • 85033778869 scopus 로고    scopus 로고
    • A synthetic glycan microarray enables epitope mapping of plant cell wall glycan-directed antibodies
    • PMID: 28924016
    • Ruprecht C, Bartetzko MP, Senf D, Dallabernadina P, Boos I, Andersen MC, et al. A synthetic glycan microarray enables epitope mapping of plant cell wall glycan-directed antibodies. Plant physiology. 2017; 175(3):1094–104. https://doi.org/10.1104/pp.17.00737 PMID: 28924016
    • (2017) Plant Physiology , vol.175 , Issue.3 , pp. 1094-1104
    • Ruprecht, C.1    Bartetzko, M.P.2    Senf, D.3    Dallabernadina, P.4    Boos, I.5    Andersen, M.C.6
  • 26
    • 84874521081 scopus 로고    scopus 로고
    • An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein
    • PMID: 23371948; PubMed Central PMCID: PMCPMC3584541
    • Tan L, Eberhard S, Pattathil S, Warder C, Glushka J, Yuan C, et al. An Arabidopsis cell wall proteoglycan consists of pectin and arabinoxylan covalently linked to an arabinogalactan protein. Plant Cell. 2013; 25(1):270–87. https://doi.org/10.1105/tpc.112.107334 PMID: 23371948; PubMed Central PMCID: PMCPMC3584541.
    • (2013) Plant Cell , vol.25 , Issue.1 , pp. 270-287
    • Tan, L.1    Eberhard, S.2    Pattathil, S.3    Warder, C.4    Glushka, J.5    Yuan, C.6
  • 27
    • 84891804612 scopus 로고    scopus 로고
    • The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    • Overbeek R, Olson R, Pusch GD, Olsen GJ, Davis JJ, Disz T, et al. The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic acids research. 2013; 42 (D1):D206–D14.
    • (2013) Nucleic Acids Research , vol.42 , Issue.D1 , pp. D206-D214
    • Overbeek, R.1    Olson, R.2    Pusch, G.D.3    Olsen, G.J.4    Davis, J.J.5    Disz, T.6
  • 28
    • 84906945206 scopus 로고    scopus 로고
    • Root microbiome relates to plant host evolution in maize and other Poaceae
    • PMID: 24588973
    • Bouffaud ML, Poirier MA, Muller D, Moënne-Loccoz Y. Root microbiome relates to plant host evolution in maize and other Poaceae. Environmental microbiology. 2014; 16(9):2804–14. https://doi.org/10.1111/1462-2920.12442 PMID: 24588973
    • (2014) Environmental Microbiology , vol.16 , Issue.9 , pp. 2804-2814
    • Bouffaud, M.L.1    Poirier, M.A.2    Muller, D.3    Moënne-Loccoz, Y.4
  • 29
    • 84884613513 scopus 로고    scopus 로고
    • Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism
    • PMID: 24086761; PubMed Central PMCID: PMCPMC3784431
    • Kolton M, Sela N, Elad Y, Cytryn E. Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism. PLoS One. 2013; 8(9):e76704. https://doi.org/10.1371/journal.pone.0076704 PMID: 24086761; PubMed Central PMCID: PMCPMC3784431.
    • (2013) PLoS One , vol.8 , Issue.9
    • Kolton, M.1    Sela, N.2    Elad, Y.3    Cytryn, E.4
  • 31
    • 0034652374 scopus 로고    scopus 로고
    • Purification, characterization and gene cloning of two alpha-L-arabinofuranosidases from Streptomyces chartreusis GS901
    • Matsuo N, Kaneko S, Kuno A, Kobayashi H, Kusakabe I. Purification, characterization and gene cloning of two alpha-L-arabinofuranosidases from streptomyces chartreusis GS901. Biochemical Journal. 2000; 346(Pt 1):9.
    • (2000) Biochemical Journal , vol.346 , pp. 9
    • Matsuo, N.1    Kaneko, S.2    Kuno, A.3    Kobayashi, H.4    Kusakabe, I.5
  • 32
    • 84958191367 scopus 로고    scopus 로고
    • Novel alpha-L-fucosidases from a soil metagenome for production of fucosylated human milk oligosaccharides
    • PMID: 26800369; PubMed Central PMCID: PMCPMC4723247
    • Lezyk M, Jers C, Kjaerulff L, Gotfredsen CH, Mikkelsen MD, Mikkelsen JD. Novel alpha-L-Fucosidases from a Soil Metagenome for Production of Fucosylated Human Milk Oligosaccharides. PLoS One. 2016; 11(1):e0147438. https://doi.org/10.1371/journal.pone.0147438 PMID: 26800369; PubMed Central PMCID: PMCPMC4723247.
    • (2016) PLoS One , vol.11 , Issue.1
    • Lezyk, M.1    Jers, C.2    Kjaerulff, L.3    Gotfredsen, C.H.4    Mikkelsen, M.D.5    Mikkelsen, J.D.6
  • 33
    • 34249725565 scopus 로고    scopus 로고
    • Mannose foraging by Bacteroides thetaiotaomicron: Structure and specificity of the beta-mannosidase, BtMan2A
    • PMID: 17287210
    • Tailford LE, Money VA, Smith NL, Dumon C, Davies GJ, Gilbert HJ. Mannose foraging by Bacteroides thetaiotaomicron: structure and specificity of the beta-mannosidase, BtMan2A. J Biol Chem. 2007; 282 (15):11291–9. https://doi.org/10.1074/jbc.M610964200 PMID: 17287210.
    • (2007) J Biol Chem , vol.282 , Issue.15 , pp. 11291-11299
    • Tailford, L.E.1    Money, V.A.2    Smith, N.L.3    Dumon, C.4    Davies, G.J.5    Gilbert, H.J.6
  • 34
    • 84912572529 scopus 로고    scopus 로고
    • Expression of a beta-mannosidase from Paenibacillus polymyxa A-8 in Escherichia coli and characterization of the recombinant enzyme
    • PMID: 25423086; PubMed Central PMCID: PMCPMC4244029
    • Bai X, Hu H, Chen H, Wei Q, Yang Z, Huang Q. Expression of a beta-mannosidase from Paenibacillus polymyxa A-8 in Escherichia coli and characterization of the recombinant enzyme. PLoS One. 2014; 9 (11):e111622. https://doi.org/10.1371/journal.pone.0111622 PMID: 25423086; PubMed Central PMCID: PMCPMC4244029.
    • (2014) PLoS One , vol.9 , Issue.11
    • Bai, X.1    Hu, H.2    Chen, H.3    Wei, Q.4    Yang, Z.5    Huang, Q.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.