Equine Influenza Virus

Molecular Detection of Animal Viral Pathogens

Volumn , Issue , 2015, Pages 383-392

  Chambers, Thomas M ^a   Balasuriya, Udeni B R ^a  

^a UNIVERSITY OF KENTUCKY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 85053064525     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter

References (81)

1. Cullinane, A. and Newton, J.R. Equine influenza-A global perspective. Vet Microbiol 167, 205-214 (2013).
2. Elton, D. and Bryant, N. Facing the threat of equine influenza. Equine Vet J 43, 250-258 (2011).
3. Landolt, G.A. Equine influenza virus. Vet Clin North Am Equine Pract 30, 507-522 (2014).
4. Daly, J.M., MacRae, S., Newton, J.R., Wattrang, E., and Elton, D.M. Equine influenza: A review of an unpredictable virus. Vet J 189, 7-14 (2011).
5. Webster, R.G. Are equine 1 influenza viruses still present in horses? Equine Vet J 25, 537-538 (1993).
6. Sovinova, O., Tumova, B., Pouska, F., and Nemec, J. Isolation of a virus causing respiratory disease in horses. Acta Virol 2, 52-61 (1958).
7. van Maanen, C. and Cullinane, A. Equine influenza virus infections: An update. Vet Q 24, 79-94 (2002).
8. Wright, P.F., Neumann, G., and Kawaoka, Y. Orthomyxoviruses. In: Fields Virology, Vol. 2 (eds. Knipe, D.M. and Howley, P.M.), pp. 1691-1740 (Lippincott Williams & Wilkins, Philadelphia, PA, 2007).
9. Ismail, T.M., Sami, A.M., Youssef, H.M., and Abou Zaid, A.A. An outbreak of equine influenza type 1 in Egypt in 1989. Vet Med J Giza 38, 195-206 (1990).
10. Madic, J., Martinovic, S., Naglic, T., Hajsig, D., and Cvetnic, S. Serological evidence for the presence of A/equine-1 influenza virus in unvaccinated horses in Croatia. Vet Rec 138, 68 (1996).
11. Singh, G. Characterization of A/eq-1 virus isolated during the equine influenza epidemic in India. Acta Virol 38, 25-26 (1994).
12. Waddell, G.H., Teigland, M.B., and Sigel, M.M. A new influenza virus associated with equine respiratory disease. J Am Vet Med Assoc 143, 587-590 (1963).
13. Dubovi, E.J. and Njaa, B.L. Canine influenza. Vet Clin Small Anim Pract 38, 827-835 (2008).
14. Daniels, R.S., Skehel, J.J., and Wiley, D.C. Amino acid sequences of haemagglutinins of influenza viruses of the H3 subtype isolated from horses. J Gen Virol 66, 457-464 (1985).
15. Klingeborn, B., Rockborn, G., and Dinter, Z. Significant antigenic drift within the influenza equi 2 subtype in Sweden. Vet Rec 106, 363-364 (1980).
16. Oxburgh, L., Berg, M., Klingeborn, B., Emmoth, E., and Linne, T. Evolution of H3N8 equine influenza virus from 1963 to 1991. Virus Res 34, 153-165 (1994).
17. Ozaki, H. et al. Antigenic variation among equine H 3 N 8 influenza virus hemagglutinins. Jpn J Vet Res 48, 177-186 (2001).
18. van Oirschot, J.T., Masurel, N., Huffels, A.D., and Anker, W.J. Equine influenza in the Netherlands during the winter of 1978-1979; antigenic drift of the A-equi 2 virus. Vet Q 3, 80-84 (1981).
19. Bryant, N.A. et al. Antigenic and genetic variations in European and North American equine influenza virus strains (H3N8) isolated from 2006 to 2007. Vet Microbiol 138, 41-52 (2009).
20. Lewis, N.S. et al. Antigenic and genetic evolution of equine influenza A (H3N8) virus from 1968 to 2007. J Virol 85, 12742-12749 (2011).
21. Woodward, A.L. et al. Development of a surveillance scheme for equine influenza in the UK and characterisation of viruses isolated in Europe, Dubai and the USA from 2010-2012. Vet Microbiol 169, 113-127 (2014).
22. Bryant, N.A. et al. Isolation and characterisation of equine influenza viruses (H3N8) from Europe and North America from 2008 to 2009. Vet Microbiol 147, 19-27 (2011).
23. Murcia, P.R. et al. Intra- and interhost evolutionary dynamics of equine influenza virus. J Virol 84, 6943-6954 (2010).
24. Payungporn, S. et al. Influenza A virus (H3N8) in dogs with respiratory disease. Emerg Infect Dis 14, 902-908 (2008).
25. Pecoraro, H.L., Bennett, S., Spindel, M.E., and Landolt, G.A. Evolution of the hemagglutinin gene of H3N8 canine influenza virus in dogs. Virus Genes 49, 393-399 (2014).
26. Hoelzer, K. et al. Intrahost evolutionary dynamics of canine influenza virus in naive and partially immune dogs. J Virol 84, 5329-5335 (2010).
27. Chambers, T.M., Balasuriya, U.B., Reedy, S.E., and Tiwari, A. Replication of avian influenza viruses in equine tracheal epithelium but not in horses. Influenza Other Respir Viruses 7(Suppl. 4), 90-93 (2013).
28. Tu, J. et al. Isolation and molecular characterization of equine H3N8 influenza viruses from pigs in China. Arch Virol 154, 887-890 (2009).
29. Wilson, W.D. Equine influenza. Vet Clin North Am Equine Pract 9, 257-282 (1993).
30. Cullinane, A., Elton, D., and Mumford, J. Equine influenza- Surveillance and control. Influenza Other Respir Viruses 4, 339-344 (2010).
31. Landolt, G.A., Townsend, H.G.G., and Lunn, D.P. Equine influenza infection. In: Equine Infectious Diseases (eds. Sellon, D.C. and Long, M.T.), pp. 141-151 (Saunders, St. Louis, MO, 2014).
32. Gerber, H. Clinical features, sequelae, and epidemiology of equine influenza. In: Equine Infectious Diseases II (eds. Bryans, J.T. and Gerber, H.), pp. 63-80 (Karger, Basel, Switzerland, 1970).
33. Lin, C. et al. The involvement of a stress-activated pathway in equine influenza virus-mediated apoptosis. Virology 287, 202-213 (2001).
34. O'Niell, F.D., Issel, C.J., and Henk, W.G. Electron microscopy of equine respiratory viruses in organ cultures of equine fetal respiratory tract epithelium. Am J Vet Res 45, 1953-1960 (1984).
35. Sarasola, P., Taylor, D.J., Love, S., and McKellar, Q.A. Secondary bacterial infections following an outbreak of equine influenza. Vet Rec 131, 441-442 (1992).
36. Anzai, T., Walker, J.A., Blair, M.B., Chambers, T.M., and Timoney, J.F. Comparison of the phenotypes of Streptococcus zooepidemicus isolated from tonsils of healthy horses and specimens obtained from foals and donkeys with pneumonia. Am J Vet Res 61, 162-166 (2000).
37. Willoughby, R. et al. The effects of equine rhinovirus, influenza virus and herpesvirus infection on tracheal clearance rate in horses. Can J Vet Res 56, 115-121 (1992).
38. Daly, J.M. et al. Investigation of equine influenza cases exhibiting neurological disease: Coincidence or association? J Comp Pathol 134, 231-235 (2006).
39. Yondon, M. et al. Isolation and characterization of H3N8 equine influenza A virus associated with the 2011 epizootic in Mongolia. Influenza Other Respir Viruses 7, 659-665 (2013).
40. Gilkerson, J.R. Equine influenza in Australia: A clinical overview. Aust Vet J 89(Suppl. 1), 11-13 (2011).
41. Peek, S.F. et al. Acute respiratory distress syndrome and fatal interstitial pneumonia associated with equine influenza in a neonatal foal. J Vet Intern Med 18, 132-134 (2004).
42. OIE (Office International des Epizooties). Equine influenza. In: Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (eds. V. Caporale et al.), pp. 546-557 (OIE, Paris, France, 2000).
43. Chambers, T.M., Shortridge, K.F., Li, P.H., Powell, D.G., and Watkins, K.L. Rapid diagnosis of equine influenza by the Directigen FLU-A enzyme immunoassay. Vet Rec 135, 275-279 (1994).
44. Donofrio, J.C., Coonrod, J.D., and Chambers, T.M. Diagnosis of equine influenza by the polymerase chain reaction. J Vet Diagn Invest 6, 39-43 (1994).
45. Fouchier, R.A. et al. Detection of influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene. J Clin Microbiol 38, 4096-4101 (2000).
46. Munch, M., Nielsen, L.P., Handberg, K.J., and Jorgensen, P.H. Detection and subtyping (H5 and H7) of avian type A influenza virus by reverse transcription-PCR and PCR-ELISA. Arch Virol 146, 87-97 (2001).
47. Oxburgh, L. and Hagstrom, A. A PCR based method for the identification of equine influenza virus from clinical samples. Vet Microbiol 67, 161-174 (1999).
48. Quinlivan, M., Dempsey, E., Ryan, F., Arkins, S., and Cullinane, A. Real-time reverse transcription PCR for detection and quantitative analysis of equine influenza virus. J Clin Microbiol 43, 5055-5057 (2005).
49. Yamanaka, T., Tsujimura, K., Kondo, T., and Matsumura, T. Evaluation of antigen detection kits for diagnosis of equine influenza. J Vet Med Sci 70, 189-192 (2008).
50. Quinlivan, M. et al. Comparison of sensitivities of virus isolation, antigen detection, and nucleic acid amplification for detection of equine influenza virus. J Clin Microbiol 42, 759-763 (2004).
51. Foord, A.J. et al. Real-time RT-PCR for detection of equine influenza and evaluation using samples from horses infected with A/equine/Sydney/2007 (H3N8). Vet Microbiol 137, 1-9 (2008).
52. Donofrio, J.C., Coonrod, J.D., Davidson, J.N., and Betts, R.F. Detection of influenza A and B in respiratory secretions with the polymerase chain reaction. PCR Methods Appl 1, 263-268 (1992).
53. Balasuriya, U.B. Type A influenza virus detection from horses by real-time RT-PCR and insulated isothermal RT-PCR. Methods Mol Biol 1161, 393-402 (2014).
54. Paillot, R. et al. Duration of equine influenza virus shedding and infectivity in immunised horses after experimental infection with EIV A/eq2/Richmond/1/07. Vet Microbiol 166, 22-34 (2013).
55. Ilobi, C.P. et al. Antigenic and molecular characterization of host cell-mediated variants of equine H3N8 influenza viruses. J Gen Virol 75, 669-673 (1994).
56. Ilobi, C.P. et al. Direct sequencing of the HA gene of clinical equine H3N8 influenza virus and comparison with laboratory derived viruses. Arch Virol 143, 891-901 (1998).
57. Cook, R.F., Sinclair, R., and Mumford, J.A. Detection of influenza nucleoprotein antigen in nasal secretions from horses infected with A/equine influenza (H3N8) viruses. J Virol Methods 20, 1-12 (1988).
58. Crawford, P.C. et al. Transmission of equine influenza virus to dogs. Science 310, 482-485 (2005).
59. Spackman, E. et al. Development of a real-time reverse tran-scriptase PCR assay for type A influenza virus and the avian H5 and H7 hemagglutinin subtypes. J Clin Microbiol 40, 3256-3260 (2002).
60. Balasuriya, U.B. et al. Rapid detection of equine influenza virus H3N8 subtype by insulated isothermal RT-PCR (iiRT-PCR) assay using the POCKIT Nucleic Acid Analyzer. J Virol Methods 207, 66-72 (2014).
61. OIE (Office International des Epizooties). Equine influenza. In: Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (eds. V. Caporale et al.), Vol. 2, pp. 865-878 (World Organisation for Animal Health (OIE), Paris, France, 2012).
62. Chambers, T.M. and Reedy, S.E. Equine influenza culture methods. Methods Mol Biol 1161, 403-410 (2014).
63. Galvin, P. et al. The evaluation of three diagnostic tests for the detection of equine influenza nucleoprotein in nasal swabs. Influenza Other Respir Viruses 8, 376-383 (2014).
64. Boliar, S., Stanislawek, W., and Chambers, T.M. Inability of kaolin treatment to remove nonspecific inhibitors from equine serum for the hemagglutination inhibition test against equine H7N7 influenza virus. J Vet Diagn Invest 18, 264-267 (2006).
65. Murphy, J. and Bustin, S.A. Reliability of real-time reverse-transcription PCR in clinical diagnostics: Gold standard or substandard? Expert Rev Mol Diagn 9, 187-197 (2009).
66. Bustin, S.A. and Mueller, R. Real-time reverse transcription PCR (qRT-PCR) and its potential use in clinical diagnosis. Clin Sci (Lond) 109, 365-379 (2005).
67. Bustin, S.A., Benes, V., Nolan, T., and Pfaffl, M.W. Quantitative real-time RT-PCR-A perspective. J Mol Endocrinol 34, 597-601 (2005).
68. Miszczak, F. et al. Evaluation of two magnetic-bead-based viral nucleic acid purification kits and three real-time reverse transcription-PCR reagent systems in two TaqMan assays for equine arteritis virus detection in semen. J Clin Microbiol 49, 3694-3696 (2011).
69. Deng, M.Y., Wang, H., Ward, G.B., Beckham, T.R., and McKenna, T.S. Comparison of six RNA extraction methods for the detection of classical swine fever virus by real-time and conventional reverse transcription-PCR. J Vet Diagn Invest 17, 574-578 (2005).
70. Knepp, J.H., Geahr, M.A., Forman, M.S., and Valsamakis, A. Comparison of automated and manual nucleic acid extraction methods for detection of enterovirus RNA. J Clin Microbiol 41, 3532-3536 (2003).
71. Zahringer, H. Old and new ways to RNA. Lab Times, p. 10 (2012).
72. Fang, X., Willis, R.C., Burrell, A., Evans, K., Hoang, Q., Xu, W., and Bounpheng, M. Automation of nucleic acid isolation on KingFisher magnetic particles. JALA 12, 7 (2007).
73. Berensmeier, S. Magnetic particles for the separation and purification of nucleic acids. Appl Microbiol Biotechnol 73, 495-504 (2006).
74. Chomczynski, P. and Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal Biochem 162, 156-159 (1987).
75. Balasuriya, U.B. RNA extraction from equine samples for equine influenza virus. Methods Mol Biol 1161, 379-392 (2014).
76. Lu, Z. et al. Development and evaluation of one-step TaqMan real-time reverse transcription-PCR assays targeting nucleo-protein, matrix, and hemagglutinin genes of equine influenza virus. J Clin Microbiol 47, 3907-3913 (2009).
77. Tsai, Y.L. et al. Development of TaqMan probe-based insulated isothermal PCR (iiPCR) for sensitive and specific on-site pathogen detection. PLoS One 7, e45278 (2012).
78. Chang, H.F. et al. A thermally baffled device for highly stabilized convective PCR. Biotechnol J 7, 662-666 (2012).
79. Yamanaka, T., Tsujimura, K., Kondo, T., Hobo, S., and Matsumura, T. Efficacy of oseltamivir phosphate to horses inoculated with equine influenza A virus. J Vet Med Sci 68, 923-928 (2006).
80. Yamanaka, T. et al. Efficacy of a single intravenous dose of the neuraminidase inhibitor peramivir in the treatment of equine influenza. Vet J 193, 358-362 (2012).
81. Rees, W.A. et al. Pharmacokinetics and therapeutic efficacy of rimantadine in horses experimentally infected with influenza virus A2. Am J Vet Res 60, 888-894 (1999).