-
1
-
-
34249694962
-
RNA: prebiotic product, or biotic invention
-
Anastasi, C., Buchet, F. F., Crowe, M. A., Parkes, A. L., Powner, M.W., Smith, J. M., and Sutherland, J. D. (2007). RNA: prebiotic product, or biotic invention- Chemistry & biodiversity, 4(4):721-39.
-
(2007)
Chemistry & biodiversity
, vol.4
, Issue.4
, pp. 721-739
-
-
Anastasi, C.1
Buchet, F. F.2
Crowe, M. A.3
Parkes, A. L.4
Powner, M.W.5
Smith, J. M.6
Sutherland, J. D.7
-
2
-
-
11644287002
-
Autocatalytic self-replicating micelles as models for prebiotic structures
-
Bachmann, P. A., Luisi, P. L., and Lang, J. (1992). Autocatalytic self-replicating micelles as models for prebiotic structures. Nature, 357(6373):57-59.
-
(1992)
Nature
, vol.357
, Issue.6373
, pp. 57-59
-
-
Bachmann, P. A.1
Luisi, P. L.2
Lang, J.3
-
4
-
-
0024848289
-
Modeling adaptive biological systems
-
discussion 138
-
Bagley, R. J., Farmer, J. D., Kauffman, S. A., Packard, N. H., Perelson, A. S., and Stadnyk, I. M. (1989). Modeling adaptive biological systems. Bio Systems, 23(2-3):113-37; discussion 138.
-
(1989)
Bio Systems
, vol.23
, Issue.2-3
, pp. 113-137
-
-
Bagley, R. J.1
Farmer, J. D.2
Kauffman, S. A.3
Packard, N. H.4
Perelson, A. S.5
Stadnyk, I. M.6
-
5
-
-
77952906690
-
Expanding Roles for Diverse Physical Phenomena During the Origin of Life
-
Budin, I. and Szostak, J. W. (2010). Expanding Roles for Diverse Physical Phenomena During the Origin of Life. Annual review of biophysics, 39:245-63.
-
(2010)
Annual review of biophysics
, vol.39
, pp. 245-263
-
-
Budin, I.1
Szostak, J. W.2
-
6
-
-
52149100341
-
Sufficient conditions for emergent synchronization in protocell models
-
Carletti, T., Serra, R., Villani, M., Poli, I., and Filisetti, A. (2008). Sufficient conditions for emergent synchronization in protocell models. J Theor Biol, 254(4):741-751.
-
(2008)
J Theor Biol
, vol.254
, Issue.4
, pp. 741-751
-
-
Carletti, T.1
Serra, R.2
Villani, M.3
Poli, I.4
Filisetti, A.5
-
8
-
-
70450240734
-
Generation of long RNA chains in water
-
Costanzo, G., Pino, S., Ciciriello, F., and Di Mauro, E. (2009). Generation of long RNA chains in water. The Journal of biological chemistry, 284(48):33206-16.
-
(2009)
The Journal of biological chemistry
, vol.284
, Issue.48
, pp. 33206-33216
-
-
Costanzo, G.1
Pino, S.2
Ciciriello, F.3
Di Mauro, E.4
-
9
-
-
84870838682
-
Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks
-
Damiani, C., Filisetti, A., Graudenzi, A., and Lecca, P. (2013). Parameter sensitivity analysis of stochastic models: Application to catalytic reaction networks. Computational biology and chemistry, 42:5-17.
-
(2013)
Computational biology and chemistry
, vol.42
, pp. 5-17
-
-
Damiani, C.1
Filisetti, A.2
Graudenzi, A.3
Lecca, P.4
-
10
-
-
84985444559
-
PEROXISOMES AND RELATED PARTICLES IN HISTORICAL PERSPECTIVE
-
(Peroxisomes a)
-
de Duve, C. (1982). PEROXISOMES AND RELATED PARTICLES IN HISTORICAL PERSPECTIVE. Annals of the New York Academy of Sciences, 386(1 Peroxisomes a):1-4.
-
(1982)
Annals of the New York Academy of Sciences
, vol.386
, Issue.1
, pp. 1-4
-
-
de Duve, C.1
-
11
-
-
34548027297
-
Question 5: on the chemical reality of the RNA world
-
De Lucrezia, D., Anella, F., and Chiarabelli, C. (2007). Question 5: on the chemical reality of the RNA world. Orig Life Evol Biosph, 37(4-5):379-385.
-
(2007)
Orig Life Evol Biosph
, vol.37
, Issue.4-5
, pp. 379-385
-
-
De Lucrezia, D.1
Anella, F.2
Chiarabelli, C.3
-
12
-
-
0004190112
-
-
Cambridge: Cambridge University Press
-
Dyson, F. J. (1985). Origins of life. Cambridge: Cambridge University Press.
-
(1985)
Origins of life
-
-
Dyson, F. J.1
-
13
-
-
0006654299
-
Molecular Quasi-Specie
-
Eigen, M. and Mccaskill, J. (1988). Molecular Quasi-Specie. J Phys Chem, 81:6881-6891.
-
(1988)
J Phys Chem
, vol.81
, pp. 6881-6891
-
-
Eigen, M.1
Mccaskill, J.2
-
14
-
-
0017667182
-
The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle
-
Eigen, M. and Schuster, P. (1977). The hypercycle. A principle of natural self-organization. Part A: Emergence of the hypercycle. Die Naturwissenschaften, 64(11):541-65.
-
(1977)
Die Naturwissenschaften
, vol.64
, Issue.11
, pp. 541-565
-
-
Eigen, M.1
Schuster, P.2
-
15
-
-
0018085524
-
The Hypercycle: A Principle of Natural Self-Organisation, Part B
-
Eigen, M. and Schuster, P. (1978). The Hypercycle: A Principle of Natural Self-Organisation, Part B. Naturwissenschaften, 65(7):7-41.
-
(1978)
Naturwissenschaften
, vol.65
, Issue.7
, pp. 7-41
-
-
Eigen, M.1
Schuster, P.2
-
17
-
-
84865207932
-
A stochastic model of the emergence of autocatalytic cycles
-
Filisetti, A., Graudenzi, A., Serra, R., Villani, M., De Lucrezia, D., Fuchslin, R. M., Kauffman, S. A., Packard, N., and Poli, I. (2011a). A stochastic model of the emergence of autocatalytic cycles. Journal of Systems Chemistry, 2(1):2.
-
(2011)
Journal of Systems Chemistry
, vol.2
, Issue.1
, pp. 2
-
-
Filisetti, A.1
Graudenzi, A.2
Serra, R.3
Villani, M.4
De Lucrezia, D.5
Fuchslin, R. M.6
Kauffman, S. A.7
Packard, N.8
Poli, I.9
-
18
-
-
84964488638
-
The role of energy in a stochastic model of the emergence of autocatalytic sets
-
T, L., M, G., Bersini, H., Bourgine, P., Dorigo, M., and Doursat, R., editors, pages MIT Press, Cambridge, MA
-
Filisetti, A., Graudenzi, A., Serra, R., Villani, M., De Lucrezia, D., and Poli, I. (2011b). The role of energy in a stochastic model of the emergence of autocatalytic sets. In T, L., M, G., Bersini, H., Bourgine, P., Dorigo, M., and Doursat, R., editors, Advances in Artificial Life, ECAL 2011 Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems, pages 227-234. MIT Press, Cambridge, MA.
-
(2011)
Advances in Artificial Life, ECAL 2011 Proceedings of the Eleventh European Conference on the Synthesis and Simulation of Living Systems
, pp. 227-234
-
-
Filisetti, A.1
Graudenzi, A.2
Serra, R.3
Villani, M.4
De Lucrezia, D.5
Poli, I.6
-
19
-
-
85152618362
-
A stochastic model of autocatalytic reaction networks
-
pages
-
Filisetti, A., Graudenzi, A., Serra, R., Villani, M., Füchslin, R. M., Packard, N., Kauffman, S. a., and Poli, I. (2011c). A stochastic model of autocatalytic reaction networks. Theory in biosciences = Theorie in den Biowissenschaften, pages 1-9.
-
(2011)
Theory in biosciences = Theorie in den Biowissenschaften
, pp. 1-9
-
-
Filisetti, A.1
Graudenzi, A.2
Serra, R.3
Villani, M.4
Füchslin, R. M.5
Packard, N.6
Kauffman, S. a.7
Poli, I.8
-
20
-
-
51349108245
-
Synchronization phenomena in protocell models
-
(/2)
-
Filisetti, A., Serra, R., Carletti, T., Villani, M., and Poli, I. (2008). Synchronization phenomena in protocell models. Biophysical Reviews and Letters (BRL), 3(1/2):325-342.
-
(2008)
Biophysical Reviews and Letters (BRL)
, vol.3
, Issue.1
, pp. 325-342
-
-
Filisetti, A.1
Serra, R.2
Carletti, T.3
Villani, M.4
Poli, I.5
-
21
-
-
78149283884
-
Non-linear protocell models: synchronization and chaos
-
Filisetti, A., Serra, R., Carletti, T., Villani, M., and Poli, I. (2010). Non-linear protocell models: synchronization and chaos. The European Physical Journal B, 77(2):249-256.
-
(2010)
The European Physical Journal B
, vol.77
, Issue.2
, pp. 249-256
-
-
Filisetti, A.1
Serra, R.2
Carletti, T.3
Villani, M.4
Poli, I.5
-
22
-
-
84968176693
-
The Protein Theory of the Origin of Life
-
Fox, S.W. (1974). The Protein Theory of the Origin of Life. American Biology Teacher, 36:161-172.
-
(1974)
American Biology Teacher
, vol.36
, pp. 161-172
-
-
Fox, S.W.1
-
23
-
-
84874743362
-
Dynamical Stability of Autocatalytic Sets
-
Fellermann, H., Dörr, M., Hanczyc, M. M., Laursen, L. L., Maurer, S., Merkle, D., Monnard, P.-A., Stoy, K., and Rasmussen, S., editors, pages The MIT Press
-
Fuchslin, R. M., Filisetti, A., Serra, R., Villani, M., DeLucrezia, D., and Poli, I. (2010). Dynamical Stability of Autocatalytic Sets. In Fellermann, H., Dörr, M., Hanczyc, M. M., Laursen, L. L., Maurer, S., Merkle, D., Monnard, P.-A., Stoy, K., and Rasmussen, S., editors, Artificial Life XII, Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems, pages 65-72. The MIT Press.
-
(2010)
Artificial Life XII, Proceedings of the Twelfth International Conference on the Synthesis and Simulation of Living Systems
, pp. 65-72
-
-
Fuchslin, R. M.1
Filisetti, A.2
Serra, R.3
Villani, M.4
DeLucrezia, D.5
Poli, I.6
-
24
-
-
36849148382
-
Origin of life: The RNA world
-
Gilbert, W. (1986). Origin of life: The RNA world. Nature, 319(6055):618-618.
-
(1986)
Nature
, vol.319
, Issue.6055
, pp. 618-618
-
-
Gilbert, W.1
-
25
-
-
33645429016
-
Exact Stochastic Simulation of Coupled Chemical Reactions
-
Gillespie, D. T. (1977). Exact Stochastic Simulation of Coupled Chemical Reactions. The Journal of Physical Chemistry, 81(25):2340-2361.
-
(1977)
The Journal of Physical Chemistry
, vol.81
, Issue.25
, pp. 2340-2361
-
-
Gillespie, D. T.1
-
26
-
-
77956401687
-
Autocatalytic Sets and the Origin of Life
-
Hordijk, W., Hein, J., and Steel, M. (2010). Autocatalytic Sets and the Origin of Life. Entropy, 12(7):1733-1742.
-
(2010)
Entropy
, vol.12
, Issue.7
, pp. 1733-1742
-
-
Hordijk, W.1
Hein, J.2
Steel, M.3
-
27
-
-
1642298923
-
Detecting autocatalytic, selfsustaining sets in chemical reaction systems
-
Hordijk, W. and Steel, M. (2004). Detecting autocatalytic, selfsustaining sets in chemical reaction systems. Journal of theoretical biology, 227(4):451-461.
-
(2004)
Journal of theoretical biology
, vol.227
, Issue.4
, pp. 451-461
-
-
Hordijk, W.1
Steel, M.2
-
28
-
-
0037134926
-
Approaching Exponential Growth with a Self-Replicating Peptide
-
Issac, R. and Chmielewski, J. (2002). Approaching Exponential Growth with a Self-Replicating Peptide. Journal of the American Chemical Society, 124(24):6808-6809.
-
(2002)
Journal of the American Chemical Society
, vol.124
, Issue.24
, pp. 6808-6809
-
-
Issac, R.1
Chmielewski, J.2
-
29
-
-
0001524340
-
Autocatalytic set and the growth of complexity in an evolutionary model
-
Jain, S. and Krishna, S. (1998). Autocatalytic set and the growth of complexity in an evolutionary model. Phys Rev Lett, 81:5684-5687.
-
(1998)
Phys Rev Lett
, vol.81
, pp. 5684-5687
-
-
Jain, S.1
Krishna, S.2
-
30
-
-
46149127936
-
The immune system, adaptation, and machine learning
-
J.D.Farmer, Packard, N. H., and Perelson, A. S. (1986). The immune system, adaptation, and machine learning. Physica D, 22(2):187-204.
-
(1986)
Physica D
, vol.22
, Issue.2
, pp. 187-204
-
-
Farmer, J.D.1
Packard, N. H.2
Perelson, A. S.3
-
31
-
-
33846340675
-
-
Springer-Verlag New York, Inc., Secaucus, NJ, USA
-
Kaneko, K. (2006). Life: An Introduction to Complex Systems Biology (Understanding Complex Systems). Springer-Verlag New York, Inc., Secaucus, NJ, USA.
-
(2006)
Life: An Introduction to Complex Systems Biology (Understanding Complex Systems)
-
-
Kaneko, K.1
-
32
-
-
0022619420
-
Autocatalytic sets of proteins
-
Kauffman, S. A. (1986). Autocatalytic sets of proteins. J Theor Biol, 119(1):1-24.
-
(1986)
J Theor Biol
, vol.119
, Issue.1
, pp. 1-24
-
-
Kauffman, S. A.1
-
33
-
-
0029761897
-
A self-replicating peptide
-
Lee, D. H., Granja, J. R., Martinez, J. A., Severin, K., and Ghadri, M. R. (1996). A self-replicating peptide. Nature, 382(6591):525-8.
-
(1996)
Nature
, vol.382
, Issue.6591
, pp. 525-528
-
-
Lee, D. H.1
Granja, J. R.2
Martinez, J. A.3
Severin, K.4
Ghadri, M. R.5
-
34
-
-
0031442682
-
Emergence of symbiosis in peptide self-replication through a hypercyclic network
-
Lee, D. H., Severin, K., Yokobayashi, Y., and Ghadiri, M. R. (1997). Emergence of symbiosis in peptide self-replication through a hypercyclic network. Nature, 390(6660):591-4.
-
(1997)
Nature
, vol.390
, Issue.6660
, pp. 591-594
-
-
Lee, D. H.1
Severin, K.2
Yokobayashi, Y.3
Ghadiri, M. R.4
-
35
-
-
84873289358
-
Theoretical conditions for the stationary reproduction of model protocells
-
Mavelli, F. and Ruiz-Mirazo, K. (2013). Theoretical conditions for the stationary reproduction of model protocells. Integrative Biology, pages 324-341.
-
(2013)
Integrative Biology
, pp. 324-341
-
-
Mavelli, F.1
Ruiz-Mirazo, K.2
-
36
-
-
11844293403
-
Random biochemical networks: The probability of self-sustaining autocatalysis
-
Mossel, E. and Steel, M. (2005). Random biochemical networks: The probability of self-sustaining autocatalysis. Journal of theoretical biology, 233(3):327-36.
-
(2005)
Journal of theoretical biology
, vol.233
, Issue.3
, pp. 327-336
-
-
Mossel, E.1
Steel, M.2
-
38
-
-
33947280553
-
-
SFI-WP 06-09-032, SFI Working Papers, Santa Fe Institute
-
Munteanu, A., Attolini, C. S., Rasmussen, S., Ziock, H., and Soĺe, R. V. (2006). Generic Darwinian selection in protocell assemblies. DOI: SFI-WP 06-09-032, SFI Working Papers, Santa Fe Institute.
-
(2006)
Generic Darwinian selection in protocell assemblies
-
-
Munteanu, A.1
Attolini, C. S.2
Rasmussen, S.3
Ziock, H.4
Soĺe, R. V.5
-
39
-
-
0034525843
-
Synthesizing oligomers from monomeric nucleotides in simulated hydrothermal environments
-
Ogasawara, H., Yoshida, A., Imai, E., Honda, H., Hatori, K., and Matsuno, K. (2000). Synthesizing oligomers from monomeric nucleotides in simulated hydrothermal environments. Origins of life and evolution of the biosphere : The journal of the International Society for the Study of the Origin of Life, 30(6):519-26.
-
(2000)
Origins of life and evolution of the biosphere : The journal of the International Society for the Study of the Origin of Life
, vol.30
, Issue.6
, pp. 519-526
-
-
Ogasawara, H.1
Yoshida, A.2
Imai, E.3
Honda, H.4
Hatori, K.5
Matsuno, K.6
-
41
-
-
1142286362
-
Transitions from Nonliving to Living Matter
-
Rasmussen, S., Chen, L., Deamer, D., C.Krakauer, D., Packard, N. H., Stadler, P. F., and Bedau, M. A. (2004). Transitions from Nonliving to Living Matter. Science, 303, 963-965.
-
(2004)
Science
, vol.303
, pp. 963-965
-
-
Rasmussen, S.1
Chen, L.2
Deamer, D.3
.Krakauer, D.4
Packard, N. H.5
Stadler, P. F.6
Bedau, M. A.7
-
42
-
-
70549094237
-
Model systems: how chemical biologists study RNA
-
Rios, A. C. and Tor, Y. (2009). Model systems: how chemical biologists study RNA. Current opinion in chemical biology, 13(5-6):660-8.
-
(2009)
Current opinion in chemical biology
, vol.13
, Issue.5-6
, pp. 660-668
-
-
Rios, A. C.1
Tor, Y.2
-
43
-
-
78649683060
-
The Origins of Cellular Life
-
Schrum, J. P., Zhu, T. F., and Szostak, J. W. (2010). The Origins of Cellular Life. Cold Spring Harbor perspectives in biology, 2(9):a002212.
-
(2010)
Cold Spring Harbor perspectives in biology
, vol.2
, Issue.9
, pp. a002212
-
-
Schrum, J. P.1
Zhu, T. F.2
Szostak, J. W.3
-
44
-
-
0035106816
-
The lipid world
-
Segŕe, D., Ben-eli, D., Deamer, D. W., and Lancet, D. (1999). The lipid world. Origins of Life and Evolution of the Biosphere, 31(1):119-145.
-
(1999)
Origins of Life and Evolution of the Biosphere
, vol.31
, Issue.1
, pp. 119-145
-
-
Segŕe, D.1
Ben-eli, D.2
Deamer, D. W.3
Lancet, D.4
-
45
-
-
0034280783
-
Composing life
-
Segŕe, D. and Lancet, D. (2000). Composing life. EMBO reports, 1(3):217-22.
-
(2000)
EMBO reports
, vol.1
, Issue.3
, pp. 217-222
-
-
Segŕe, D.1
Lancet, D.2
-
46
-
-
0032173377
-
Graded Autocatalysis Replication Domain (GARD): kinetic analysis of self-replication in mutually catalytic sets
-
Segre, D., Lancet, D., Kedem, O., and Pilpel, Y. (1998). Graded Autocatalysis Replication Domain (GARD): kinetic analysis of self-replication in mutually catalytic sets. Orig Life Evol Biosph, 28(4-6):501-514.
-
(1998)
Orig Life Evol Biosph
, vol.28
, Issue.4-6
, pp. 501-514
-
-
Segre, D.1
Lancet, D.2
Kedem, O.3
Pilpel, Y.4
-
47
-
-
33947240912
-
Syncronization phenomena in surface-reaction models of protocells
-
Serra, R., Carletti, T., and Poli, I. (2007). Syncronization phenomena in surface-reaction models of protocells. Artificial life, 123(2):123-38.
-
(2007)
Artificial life
, vol.123
, Issue.2
, pp. 123-138
-
-
Serra, R.1
Carletti, T.2
Poli, I.3
-
48
-
-
85152621263
-
A stochastic model of catalytic reaction networks in protocells
-
Serra, R., Filisetti, A., Villani, M., Damiani, C., Graudenzi, A., and Panini, T. (2013). A stochastic model of catalytic reaction networks in protocells. Submitted to Artificial Life.
-
(2013)
Submitted to Artificial Life
-
-
Serra, R.1
Filisetti, A.2
Villani, M.3
Damiani, C.4
Graudenzi, A.5
Panini, T.6
-
50
-
-
77952364826
-
Achievements and open questions in the self-reproduction of vesicles and synthetic minimal cells
-
Stano, P. and Luisi, P. L. (2010). Achievements and open questions in the self-reproduction of vesicles and synthetic minimal cells. Chemical communications (Cambridge, England), 46(21):3639-53.
-
(2010)
Chemical communications (Cambridge, England)
, vol.46
, Issue.21
, pp. 3639-3653
-
-
Stano, P.1
Luisi, P. L.2
-
51
-
-
0035905809
-
Synthesizing life
-
Szostak, J. W., Bartel, D. P., and Luisi, P. L. (2001). Synthesizing life. Nature, 409(6818):387-390.
-
(2001)
Nature
, vol.409
, Issue.6818
, pp. 387-390
-
-
Szostak, J. W.1
Bartel, D. P.2
Luisi, P. L.3
-
52
-
-
70349995865
-
Natural and unnatural ribozymes: back to the primordial RNA world
-
Talini, G., Gallori, E., and Maurel, M.-C. (2009). Natural and unnatural ribozymes: back to the primordial RNA world. Research in microbiology, 160(7):457-65.
-
(2009)
Research in microbiology
, vol.160
, Issue.7
, pp. 457-465
-
-
Talini, G.1
Gallori, E.2
Maurel, M.-C.3
-
53
-
-
84855399763
-
Evolution before genes
-
Vasas, V., Fernando, C., Santos, M., Kauffman, S., and Szathmary, E. (2012). Evolution before genes. Biology Direct, 7(1):1.
-
(2012)
Biology Direct
, vol.7
, Issue.1
, pp. 1
-
-
Vasas, V.1
Fernando, C.2
Santos, M.3
Kauffman, S.4
Szathmary, E.5
|