-
1
-
-
78449296002
-
Organelle proteomics experimental designs and analysis
-
21080489
-
Gatto L Vizcaíno JA Hermjakob H : Organelle proteomics experimental designs and analysis. Proteomics. 2010;10(22):3957-69. 21080489 10.1002/pmic.201000244
-
(2010)
Proteomics
, vol.10
, Issue.22
, pp. 3957-3969
-
-
Gatto, L.1
Vizcaíno, J.A.2
Hermjakob, H.3
-
2
-
-
84954545040
-
A draft map of the mouse pluripotent stem cell spatial proteome
-
26754106, 4729960
-
Christoforou A Mulvey CM Breckels LM : A draft map of the mouse pluripotent stem cell spatial proteome. Nat Commun. 2016;7: 8992. 26754106 10.1038/ncomms9992 4729960
-
(2016)
Nat Commun
, vol.7
-
-
Christoforou, A.1
Mulvey, C.M.2
Breckels, L.M.3
-
3
-
-
84979673478
-
Global, quantitative and dynamic mapping of protein subcellular localization
-
27278775, 4959882, ;: pii: e16950.
-
Itzhak DN Tyanova S Cox J : Global, quantitative and dynamic mapping of protein subcellular localization. eLife. 2016;5: pii: e16950. 27278775 10.7554/eLife.16950 4959882
-
(2016)
eLife
, vol.5
-
-
Itzhak, D.N.1
Tyanova, S.2
Cox, J.3
-
4
-
-
84994577484
-
A Portrait of the Human Organelle Proteome In Space and Time During Cytomegalovirus Infection
-
27641956, 5083158
-
Jean Beltran PM Mathias RA Cristea IM : A Portrait of the Human Organelle Proteome In Space and Time During Cytomegalovirus Infection. Cell Syst. 2016;3(4):361-373.e6. 27641956 10.1016/j.cels.2016.08.012 5083158
-
(2016)
Cell Syst
, vol.3
, Issue.4
, pp. 361-373
-
-
Jean Beltran, P.M.1
Mathias, R.A.2
Cristea, I.M.3
-
5
-
-
85029363057
-
A Mass Spectrometry-Based Approach for Mapping Protein Subcellular Localization Reveals the Spatial Proteome of Mouse Primary Neurons
-
28903049, 5775508
-
Itzhak DN Davies C Tyanova S : A Mass Spectrometry-Based Approach for Mapping Protein Subcellular Localization Reveals the Spatial Proteome of Mouse Primary Neurons. Cell Rep. 2017;20(11):2706-2718. 28903049 10.1016/j.celrep.2017.08.063 5775508
-
(2017)
Cell Rep
, vol.20
, Issue.11
, pp. 2706-2718
-
-
Itzhak, D.N.1
Davies, C.2
Tyanova, S.3
-
6
-
-
85041376087
-
Role of the AP-5 adaptor protein complex in late endosome-to-Golgi retrieval
-
29381698, 5806898
-
Hirst J Itzhak DN Antrobus R : Role of the AP-5 adaptor protein complex in late endosome-to-Golgi retrieval. PLoS Biol. 2018;16(1):e2004411. 29381698 10.1371/journal.pbio.2004411 5806898
-
(2018)
PLoS Biol
, vol.16
, Issue.1
-
-
Hirst, J.1
Itzhak, D.N.2
Antrobus, R.3
-
7
-
-
84961289551
-
Orchestrating high-throughput genomic analysis with bioconductor
-
25633503, 4509590
-
Huber W Carey VJ Gentleman R : Orchestrating high-throughput genomic analysis with bioconductor. Nat Methods. 2015;12(2):115-21. 25633503 10.1038/nmeth.3252 4509590
-
(2015)
Nat Methods
, vol.12
, Issue.2
, pp. 115-121
-
-
Huber, W.1
Carey, V.J.2
Gentleman, R.3
-
8
-
-
84890569154
-
Using R and Bioconductor for proteomics data analysis
-
23692960
-
Gatto L Christoforou A : Using R and Bioconductor for proteomics data analysis. Biochim Biophys Acta. 2014;1844(1 Pt A):42-51. 23692960 10.1016/j.bbapap.2013.04.032
-
(2014)
Biochim Biophys Acta
, vol.1844
, Issue.1
, pp. 42-51
-
-
Gatto, L.1
Christoforou, A.2
-
9
-
-
84926479166
-
Visualization of proteomics data using R and Bioconductor
-
25690415, 4510819
-
Gatto L Breckels LM Naake T : Visualization of proteomics data using R and Bioconductor. Proteomics. 2015;15(8):1375-1389. ISSN 1615-9861. 25690415 10.1002/pmic.201400392 4510819
-
(2015)
Proteomics
, vol.15
, Issue.8
, pp. 1375-1389
-
-
Gatto, L.1
Breckels, L.M.2
Naake, T.3
-
10
-
-
12444345515
-
Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
-
12713048
-
Thompson A Schäfer J Kuhn K : Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal Chem. 2003;75(8):1895-904. 12713048 10.1021/ac0262560
-
(2003)
Anal Chem
, vol.75
, Issue.8
, pp. 1895-1904
-
-
Thompson, A.1
Schäfer, J.2
Kuhn, K.3
-
11
-
-
84904325891
-
Multinotch MS3enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes
-
24927332, 4215866
-
McAlister GC Nusinow DP Jedrychowski MP : Multinotch MS3 enables accurate, sensitive, and multiplexed detection of differential expression across cancer cell line proteomes. Anal Chem. 2014;86(14):7150-8. 24927332 10.1021/ac502040v 4215866
-
(2014)
Anal Chem
, vol.86
, Issue.14
, pp. 7150-7158
-
-
McAlister, G.C.1
Nusinow, D.P.2
Jedrychowski, M.P.3
-
12
-
-
78649680828
-
Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions
-
21058340
-
Trotter MW Sadowski PG Dunkley TP : Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions. Proteomics. 2010;10(23):4213-4219. ISSN 1615-9861. 21058340 10.1002/pmic.201000359
-
(2010)
Proteomics
, vol.10
, Issue.23
, pp. 4213-4219
-
-
Trotter, M.W.1
Sadowski, P.G.2
Dunkley, T.P.3
-
13
-
-
84929657508
-
Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics
-
25855118, 4776766
-
Webb-Robertson BJ Wiberg HK Matzke MM : Review, evaluation, and discussion of the challenges of missing value imputation for mass spectrometry-based label-free global proteomics. J Proteome Res. 2015;14(5):1993-2001. 25855118 10.1021/pr501138h 4776766
-
(2015)
J Proteome Res
, vol.14
, Issue.5
, pp. 1993-2001
-
-
Webb-Robertson, B.J.1
Wiberg, H.K.2
Matzke, M.M.3
-
14
-
-
84963706086
-
Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies
-
26906401
-
Lazar C Gatto L Ferro M : Accounting for the Multiple Natures of Missing Values in Label-Free Quantitative Proteomics Data Sets to Compare Imputation Strategies. J Proteome Res. 2016;15(4):1116-25. 26906401 10.1021/acs.jproteome.5b00981
-
(2016)
J Proteome Res
, vol.15
, Issue.4
, pp. 1116-1125
-
-
Lazar, C.1
Gatto, L.2
Ferro, M.3
-
15
-
-
84905215664
-
A foundation for reliable spatial proteomics data analysis
-
24846987, 4125728
-
Gatto L Breckels LM Burger T : A foundation for reliable spatial proteomics data analysis. Mol Cell Proteomics. 2014;13(8):1937-52. 24846987 10.1074/mcp.M113.036350 4125728
-
(2014)
Mol Cell Proteomics
, vol.13
, Issue.8
, pp. 1937-1952
-
-
Gatto, L.1
Breckels, L.M.2
Burger, T.3
-
16
-
-
0019812922
-
A short history of tissue fractionation
-
7033241, 2112816
-
De Duve C Beaufay H : A short history of tissue fractionation. J Cell Biol. 1981;91(3 Pt 2):293s-299s. 7033241 10.1083/jcb.91.3.293s 2112816
-
(1981)
J Cell Biol
, vol.91
, Issue.3
, pp. 293s-299s
-
-
De Duve, C.1
Beaufay, H.2
-
17
-
-
0034069495
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium
-
10802651, 3037419
-
Ashburner M Ball CA Blake JA : Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25(1):25-9. 10802651 10.1038/75556 3037419
-
(2000)
Nat Genet
, vol.25
, Issue.1
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
-
18
-
-
85050310826
-
A bioconductor workflow for processing and analysing spatial proteomics data
-
Reference Source
-
Breckels LM Gatto L : A bioconductor workflow for processing and analysing spatial proteomics data.2016. Reference Source
-
(2016)
-
-
Breckels, L.M.1
Gatto, L.2
-
19
-
-
84893355890
-
The effect of organelle discovery upon sub-cellular protein localisation
-
23523639
-
Breckels LM Gatto L Christoforou A : The effect of organelle discovery upon sub-cellular protein localisation. J Proteomics. 2013;88:129-40. 23523639 10.1016/j.jprot.2013.02.019
-
(2013)
J Proteomics
, vol.88
, pp. 129-140
-
-
Breckels, L.M.1
Gatto, L.2
Christoforou, A.3
-
20
-
-
84869235386
-
mclust Version 4 for R: Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation
-
Reference Source
-
Fraley C Raftery AE Murphy TB : mclust Version 4 for R: Normal Mixture Modeling for Model-Based Clustering, Classification, and Density Estimation.2012. Reference Source
-
(2012)
-
-
Fraley, C.1
Raftery, A.E.2
Murphy, T.B.3
-
21
-
-
84893841383
-
Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue
-
24344820, 3929368
-
Groen AJ Sancho-Andrés G Breckels LM : Identification of trans-golgi network proteins in Arabidopsis thaliana root tissue. J Proteome Res. 2014;13(2):763-76. 24344820 10.1021/pr4008464 3929368
-
(2014)
J Proteome Res
, vol.13
, Issue.2
, pp. 763-776
-
-
Groen, A.J.1
Sancho-Andrés, G.2
Breckels, L.M.3
-
22
-
-
67650547651
-
The organelle proteome of the DT40 lymphocyte cell line
-
19181659, 2690488
-
Hall SL Hester S Griffin JL : The organelle proteome of the DT40 lymphocyte cell line. Mol Cell Proteomics. 2009;8(6):1295-1305. 19181659 10.1074/mcp.M800394-MCP200 2690488
-
(2009)
Mol Cell Proteomics
, vol.8
, Issue.6
, pp. 1295-1305
-
-
Hall, S.L.1
Hester, S.2
Griffin, J.L.3
-
23
-
-
33646236590
-
Mapping the Arabidopsis organelle proteome
-
16618929, 1458916
-
Dunkley TP Hester S Shadforth IP : Mapping the Arabidopsis organelle proteome. Proc Natl Acad Sci U S A. 2006;103(17):6518-6523. 16618929 10.1073/pnas.0506958103 1458916
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.17
, pp. 6518-6523
-
-
Dunkley, T.P.1
Hester, S.2
Shadforth, I.P.3
-
24
-
-
67049146295
-
Mapping organelle proteins and protein complexes in Drosophila melanogaster
-
19317464
-
Tan DJ Dvinge H Christoforou A : Mapping organelle proteins and protein complexes in Drosophila melanogaster. J Proteome Res. 2009;8(6):2667-78. 19317464 10.1021/pr800866n
-
(2009)
J Proteome Res
, vol.8
, Issue.6
, pp. 2667-2678
-
-
Tan, D.J.1
Dvinge, H.2
Christoforou, A.3
-
25
-
-
84975853447
-
Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics
-
27175778, 4866734
-
Breckels LM Holden SB Wojnar D : Learning from Heterogeneous Data Sources: An Application in Spatial Proteomics. PLoS Comput Biol. 2016;12(5):e1004920. 27175778 10.1371/journal.pcbi.1004920 4866734
-
(2016)
PLoS Comput Biol
, vol.12
, Issue.5
-
-
Breckels, L.M.1
Holden, S.B.2
Wojnar, D.3
-
26
-
-
78650034777
-
Towards a knowledge-based Human Protein Atlas
-
21139605
-
Uhlen M Oksvold P Fagerberg L : Towards a knowledge-based Human Protein Atlas. Nat Biotechnol. 2010;28(12):1248-1250. ISSN 1546-1696. 21139605 10.1038/nbt1210-1248
-
(2010)
Nat Biotechnol
, vol.28
, Issue.12
, pp. 1248-1250
-
-
Uhlen, M.1
Oksvold, P.2
Fagerberg, L.3
-
27
-
-
85006770390
-
hpar: Human Protein Atlas in R
-
Reference Source, R package version 1.16.0.
-
Gatto L : hpar: Human Protein Atlas in R.R package version 1.16.0.2016. Reference Source
-
(2016)
-
-
Gatto, L.1
-
28
-
-
85050264186
-
lmsimp/bioc-pRoloc-hyperLOPIT-workflow: submission2 (Version v2.0)
-
Data Source
-
Gatto L Breckels L : lmsimp/bioc-pRoloc-hyperLOPIT-workflow: submission2 (Version v2.0). Zenodo. 2018. Data Source
-
(2018)
Zenodo
-
-
Gatto, L.1
Breckels, L.2
|