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Volumn 10, Issue 23, 2010, Pages 4213-4219

Improved sub-cellular resolution via simultaneous analysis of organelle proteomics data across varied experimental conditions

Author keywords

Bioinformatics; Organelle proteomics; Protein localisation; Statistical models; Support vector machines

Indexed keywords

CELL PROTEIN; PROTEOME;

EID: 78649680828     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000359     Document Type: Article
Times cited : (37)

References (31)
  • 1
    • 0037934549 scopus 로고    scopus 로고
    • Subcellular proteomics
    • Dreger, M., Subcellular proteomics. Mass Spectrom. Rev. 2003, 22, 27-56.
    • (2003) Mass Spectrom. Rev. , vol.22 , pp. 27-56
    • Dreger, M.1
  • 3
    • 0142184341 scopus 로고    scopus 로고
    • Global analysis of protein localization in budding yeast
    • Huh, W. K., Falvo, J. V., Gerke, L. C., Carroll, A. S. et al., Global analysis of protein localization in budding yeast. Nature 2003, 425, 686-691.
    • (2003) Nature , vol.425 , pp. 686-691
    • Huh, W.K.1    Falvo, J.V.2    Gerke, L.C.3    Carroll, A.S.4
  • 4
    • 41549148628 scopus 로고    scopus 로고
    • Towards a confocal subcellular atlas of the human proteome
    • Barbe, L., Lundberg, E., Oksvold, P., Stenius, A. et al., Towards a confocal subcellular atlas of the human proteome. Mol. Cell. Proteomics 2008, 7, 499-508.
    • (2008) Mol. Cell. Proteomics , vol.7 , pp. 499-508
    • Barbe, L.1    Lundberg, E.2    Oksvold, P.3    Stenius, A.4
  • 5
    • 33845500104 scopus 로고    scopus 로고
    • Quantitative proteomics analysis of the secretory pathway
    • Gilchrist, A., Au, C. E., Hiding, J., Bell, A. W. et al., Quantitative proteomics analysis of the secretory pathway. Cell 2006, 127, 1265-1281.
    • (2006) Cell , vol.127 , pp. 1265-1281
    • Gilchrist, A.1    Au, C.E.2    Hiding, J.3    Bell, A.W.4
  • 6
    • 34247391127 scopus 로고    scopus 로고
    • Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins
    • Lam, Y. W., Lamond, A. I., Mann, M., Andersen, J. S., Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins. Curr. Biol. 2007, 17, 749-760.
    • (2007) Curr. Biol. , vol.17 , pp. 749-760
    • Lam, Y.W.1    Lamond, A.I.2    Mann, M.3    Andersen, J.S.4
  • 7
    • 76649100750 scopus 로고    scopus 로고
    • Application of proteomic marker ensembles to subcellular organelle identification
    • Andreyev, A. Y., Shen, Z., Guan, Z., Ryan, A. et al., Application of proteomic marker ensembles to subcellular organelle identification. Mol. Cell. Proteomics 2010, 9, 388-402.
    • (2010) Mol. Cell. Proteomics , vol.9 , pp. 388-402
    • Andreyev, A.Y.1    Shen, Z.2    Guan, Z.3    Ryan, A.4
  • 8
    • 0015099032 scopus 로고
    • Tissue fractionation
    • de Duve, C., Tissue fractionation. J. Cell Biol. 1971, 50, 20D-55D
    • (1971) J. Cell Biol. , vol.50
    • de Duve, C.1
  • 9
    • 0346874342 scopus 로고    scopus 로고
    • Proteomic characterization of the human centrosome by protein correlation profiling
    • Andersen, J. S., Wilkinson, C. J., Mayor, T., Mortensen, P. et al., Proteomic characterization of the human centrosome by protein correlation profiling. Nature 2003, 426, 570-574.
    • (2003) Nature , vol.426 , pp. 570-574
    • Andersen, J.S.1    Wilkinson, C.J.2    Mayor, T.3    Mortensen, P.4
  • 10
    • 33646473345 scopus 로고    scopus 로고
    • A mammalian organelle map by protein correlation profiling
    • Foster, L. J., de Hoog, C. L., Zhang, Y. L., Zhang, Y. et al., A mammalian organelle map by protein correlation profiling. Cell 2006, 125, 187-199.
    • (2006) Cell , vol.125 , pp. 187-199
    • Foster, L.J.1    de Hoog, C.L.2    Zhang, Y.L.3    Zhang, Y.4
  • 11
    • 38349082663 scopus 로고    scopus 로고
    • Proteomics characterization of mouse kidney Peroxisomes by tandem mass spectrometry and protein correlation profiling
    • Wiese, S., Gronemeyer, T., Ofman, R., Kunze, M. et al., Proteomics characterization of mouse kidney Peroxisomes by tandem mass spectrometry and protein correlation profiling. Mol. Cell. Proteomics 2007, 6, 2045-2057.
    • (2007) Mol. Cell. Proteomics , vol.6 , pp. 2045-2057
    • Wiese, S.1    Gronemeyer, T.2    Ofman, R.3    Kunze, M.4
  • 13
    • 55749096878 scopus 로고    scopus 로고
    • Sub-cellular localization of membrane proteins
    • Sadowski, P. G., Groen, A. J., Dupree, P., Lilley, K. S., Sub-cellular localization of membrane proteins. Proteomics 2008, 8, 3991-4011.
    • (2008) Proteomics , vol.8 , pp. 3991-4011
    • Sadowski, P.G.1    Groen, A.J.2    Dupree, P.3    Lilley, K.S.4
  • 14
    • 67049146295 scopus 로고    scopus 로고
    • Mapping Organelle Proteins and Protein Complexes in Drosophila melanogaster
    • Tan, D. J. L., Dvinge, H., Christoforou, A., Bertone, P. et al., Mapping Organelle Proteins and Protein Complexes in Drosophila melanogaster. J. Proteome Res.. 2009, 8, 2667-2678.
    • (2009) J. Proteome Res.. , vol.8 , pp. 2667-2678
    • Tan, D.J.L.1    Dvinge, H.2    Christoforou, A.3    Bertone, P.4
  • 16
    • 12444345515 scopus 로고    scopus 로고
    • Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS
    • Thompson, A., Schafer, J., Kuhn, K., Kienle, S. et al., Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 2003, 75, 1895-1904.
    • (2003) Anal. Chem. , vol.75 , pp. 1895-1904
    • Thompson, A.1    Schafer, J.2    Kuhn, K.3    Kienle, S.4
  • 17
    • 41949139372 scopus 로고    scopus 로고
    • Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags
    • Ow, S. Y., Cardona, T., Taton, A., Magnuson, A. et al., Quantitative shotgun proteomics of enriched heterocysts from Nostoc sp. PCC 7120 using 8-plex isobaric peptide tags. J. Proteome Res. 2008, 7, 1615-1628.
    • (2008) J. Proteome Res. , vol.7 , pp. 1615-1628
    • Ow, S.Y.1    Cardona, T.2    Taton, A.3    Magnuson, A.4
  • 18
    • 0041654220 scopus 로고
    • Multi-dimensional scaling by optimising goodness of fit to a non-metric hypothesis
    • Kruskhal, J. B., Multi-dimensional scaling by optimising goodness of fit to a non-metric hypothesis. Psychometrika 1964, 29, 1-27.
    • (1964) Psychometrika , vol.29 , pp. 1-27
    • Kruskhal, J.B.1
  • 19
    • 0004217877 scopus 로고
    • Information Retrieval
    • Butterworths, London .
    • van Rijsbergen, C. J., Information Retrieval, Butterworths, London 1979.
    • (1979)
    • van Rijsbergen, C.J.1
  • 20
    • 0002322469 scopus 로고
    • On a test of whether one of two random variables is stochastically larger than the other
    • Mann, H. B., Whitney, D. R., On a test of whether one of two random variables is stochastically larger than the other. Ann. Math. Stat. 1947, 18, 50-60.
    • (1947) Ann. Math. Stat. , vol.18 , pp. 50-60
    • Mann, H.B.1    Whitney, D.R.2
  • 21
    • 0031272926 scopus 로고    scopus 로고
    • Comparing support vector machines with gaussian kernels to radial basis function classifiers
    • Schölkopf, B., Sung, K., Burges, C., Girosi, F. et al., Comparing support vector machines with gaussian kernels to radial basis function classifiers. IEEE Trans. Signal Process. 1997, 45, 2758-2765.
    • (1997) IEEE Trans. Signal Process. , vol.45 , pp. 2758-2765
    • Schölkopf, B.1    Sung, K.2    Burges, C.3    Girosi, F.4
  • 22
    • 0003450542 scopus 로고
    • The Nature of Statistical Learning Theory
    • Srpinger, New York,
    • Vapnik, V. N., The Nature of Statistical Learning Theory, Srpinger, New York, 1995.
    • (1995)
    • Vapnik, V.N.1
  • 23
    • 0003798635 scopus 로고    scopus 로고
    • An Introduction to Support Vector Machines (and Other Kernel-Based Learning Methods)
    • Cambridge University Press, Cambridge .
    • Cristianini, N., Shawe-Taylor, J., An Introduction to Support Vector Machines (and Other Kernel-Based Learning Methods). Cambridge University Press, Cambridge 2000.
    • (2000)
    • Cristianini, N.1    Shawe-Taylor, J.2
  • 24
    • 78649654983 scopus 로고    scopus 로고
    • Multi-class support vector machines, in: Verleysen, M. (Ed.) Proceedings of ESANN99, Brussels
    • Weston, J., Watkins, C., Multi-class support vector machines, in: Verleysen, M. (Ed.) Proceedings of ESANN99, Brussels 1999.
    • (1999)
    • Weston, J.1    Watkins, C.2
  • 25
    • 78649643464 scopus 로고    scopus 로고
    • Appearance-based object recognition using SVMs: which Kernel should i use? in Proceedings of the NIPS workshop on Statistical methods for computational experiments in visual processing and computer vision, Whistler
    • Caputo, B., Sim, K., Furesjo, F., Smola, A., Appearance-based object recognition using SVMs: which Kernel should i use? in Proceedings of the NIPS workshop on Statistical methods for computational experiments in visual processing and computer vision, Whistler 2002.
    • (2002)
    • Caputo, B.1    Sim, K.2    Furesjo, F.3    Smola, A.4
  • 26
    • 78649641746 scopus 로고    scopus 로고
    • Kernlab - An S4 Package for Kernel Methods in R,
    • Karatzoglou, A., Smola, A., Hornik, K., Kernlab - An S4 Package for Kernel Methods in R, 2010, ().
    • (2010)
    • Karatzoglou, A.1    Smola, A.2    Hornik, K.3
  • 27
    • 85164392958 scopus 로고
    • A study of cross-validation and bootstrap for accuracy estimation and model selection
    • th International Joint Conference on Artificial Intelligence, Montreal, Quebec, Canada
    • th International Joint Conference on Artificial Intelligence, Vol. 2, Montreal, Quebec, Canada 1995, pp. 1137-1145.
    • (1995) , vol.2 , pp. 1137-1145
    • Kohavi, R.1
  • 28
    • 0034602774 scopus 로고    scopus 로고
    • Knowledge based analysis of microarray gene expression data by using support vector machines
    • Brown, M. P. S., Grundy, W. N., Lin, D., Cristianini, N., Knowledge based analysis of microarray gene expression data by using support vector machines. Proc Natl. Acad. Sci. USA 2000, 97, 262-267.
    • (2000) Proc Natl. Acad. Sci. USA , vol.97 , pp. 262-267
    • Brown, M.P.S.1    Grundy, W.N.2    Lin, D.3    Cristianini, N.4
  • 29
    • 84926662675 scopus 로고
    • Nearest neighbour pattern classification
    • Cover, T. M., Hart, P. E., Nearest neighbour pattern classification. IEEE Trans. Inform. Theory 1967, 13, 21-27.
    • (1967) IEEE Trans. Inform. Theory , vol.13 , pp. 21-27
    • Cover, T.M.1    Hart, P.E.2
  • 30
    • 33947325162 scopus 로고    scopus 로고
    • Learning interpretable SVMs for biological sequence classification
    • Rätsch, G., Sonnenburg, S., Schäfer, C., Learning interpretable SVMs for biological sequence classification. BMC Bioinformatics 2006, 7, 9.
    • (2006) BMC Bioinformatics , vol.7 , pp. 9
    • Rätsch, G.1    Sonnenburg, S.2    Schäfer, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.