-
1
-
-
45149120565
-
Mediterranean diet in pregnancy is protective for wheeze and atopy in childhood
-
Chatzi L, Torrent M, Romieu I, Garcia-Esteban R, Ferrer C, Vioque J, Kogevinas M, Sunyer J. Mediterranean diet in pregnancy is protective for wheeze and atopy in childhood. Thorax. 2008;63:507-13.
-
(2008)
Thorax
, vol.63
, pp. 507-513
-
-
Chatzi, L.1
Torrent, M.2
Romieu, I.3
Garcia-Esteban, R.4
Ferrer, C.5
Vioque, J.6
Kogevinas, M.7
Sunyer, J.8
-
2
-
-
84888334402
-
group I, group R: Mediterranean diet adherence during pregnancy and risk of wheeze and eczema in the first year of life: INMA (Spain) and RHEA (Greece) mother-child cohort studies
-
Chatzi L, Garcia R, Roumeliotaki T, Basterrechea M, Begiristain H, Iniguez C, Vioque J, Kogevinas M, Sunyer J, group Is, group Rs: Mediterranean diet adherence during pregnancy and risk of wheeze and eczema in the first year of life: INMA (Spain) and RHEA (Greece) mother-child cohort studies. Br J Nutr 2013, 110:2058-2068.
-
(2013)
Br J Nutr
, vol.110
, pp. 2058-2068
-
-
Chatzi, L.1
Garcia, R.2
Roumeliotaki, T.3
Basterrechea, M.4
Begiristain, H.5
Iniguez, C.6
Vioque, J.7
Kogevinas, M.8
Sunyer, J.9
-
3
-
-
84892828465
-
Diet rapidly and reproducibly alters the human gut microbiome
-
David LA, Maurice CF, Carmody RN, Gootenberg DB, Button JE, Wolfe BE, Ling AV, Devlin AS, Varma Y, Fischbach MA, et al. Diet rapidly and reproducibly alters the human gut microbiome. Nature. 2014;505:559-63.
-
(2014)
Nature
, vol.505
, pp. 559-563
-
-
David, L.A.1
Maurice, C.F.2
Carmody, R.N.3
Gootenberg, D.B.4
Button, J.E.5
Wolfe, B.E.6
Ling, A.V.7
Devlin, A.S.8
Varma, Y.9
Fischbach, M.A.10
-
4
-
-
33847233644
-
Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces
-
Duncan SH, Belenguer A, Holtrop G, Johnstone AM, Flint HJ, Lobley GE. Reduced dietary intake of carbohydrates by obese subjects results in decreased concentrations of butyrate and butyrate-producing bacteria in feces. Appl Environ Microbiol. 2007;73:1073-8.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 1073-1078
-
-
Duncan, S.H.1
Belenguer, A.2
Holtrop, G.3
Johnstone, A.M.4
Flint, H.J.5
Lobley, G.E.6
-
5
-
-
77950669604
-
The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice
-
Turnbaugh PJ, Ridaura VK, Faith JJ, Rey FE, Knight R, Gordon JI. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice. Sci Transl Med. 2009;1:6ra14.
-
(2009)
Sci Transl Med
, vol.1
, pp. 6ra14
-
-
Turnbaugh, P.J.1
Ridaura, V.K.2
Faith, J.J.3
Rey, F.E.4
Knight, R.5
Gordon, J.I.6
-
6
-
-
85007568852
-
The early infant gut microbiome varies in association with a maternal high-fat diet
-
Chu DM, Antony KM, Ma J, Prince AL, Showalter L, Moller M, Aagaard KM. The early infant gut microbiome varies in association with a maternal high-fat diet. Genome Med. 2016;8:77.
-
(2016)
Genome Med
, vol.8
, pp. 77
-
-
Chu, D.M.1
Antony, K.M.2
Ma, J.3
Prince, A.L.4
Showalter, L.5
Moller, M.6
Aagaard, K.M.7
-
7
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc Natl Acad Sci U S A. 2010;107:11971-5.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
Knight, R.7
-
8
-
-
84875150368
-
Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months
-
Azad MB, Konya T, Maughan H, Guttman DS, Field CJ, Chari RS, Sears MR, Becker AB, Scott JA, Kozyrskyj AL, Investigators CS. Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months. CMAJ. 2013;185:385-94.
-
(2013)
CMAJ
, vol.185
, pp. 385-394
-
-
Azad, M.B.1
Konya, T.2
Maughan, H.3
Guttman, D.S.4
Field, C.J.5
Chari, R.S.6
Sears, M.R.7
Becker, A.B.8
Scott, J.A.9
Kozyrskyj, A.L.10
Investigators, C.S.11
-
9
-
-
84922016335
-
Diversity and composition of the adult fecal microbiome associated with history of cesarean birth or appendectomy: analysis of the American Gut Project
-
Goedert JJ, Hua X, Yu G, Shi J. Diversity and composition of the adult fecal microbiome associated with history of cesarean birth or appendectomy: analysis of the American Gut Project. EBioMedicine. 2014;1:167-72.
-
(2014)
EBioMedicine
, vol.1
, pp. 167-172
-
-
Goedert, J.J.1
Hua, X.2
Yu, G.3
Shi, J.4
-
10
-
-
84971322269
-
Inapparent Streptococcus agalactiae infection in adult/commercial tilapia
-
Sun J, Fang W, Ke B, He D, Liang Y, Ning D, Tan H, Peng H, Wang Y, Ma Y, et al. Inapparent Streptococcus agalactiae infection in adult/commercial tilapia. Sci Rep. 2016;6:26319.
-
(2016)
Sci Rep
, vol.6
, pp. 26319
-
-
Sun, J.1
Fang, W.2
Ke, B.3
He, D.4
Liang, Y.5
Ning, D.6
Tan, H.7
Peng, H.8
Wang, Y.9
Ma, Y.10
-
11
-
-
0030804035
-
Invasive infections due to a fish pathogen, Streptococcus iniae. S iniae Study Group
-
Weinstein MR, Litt M, Kertesz DA, Wyper P, Rose D, Coulter M, McGeer A, Facklam R, Ostach C, Willey BM, et al. Invasive infections due to a fish pathogen, Streptococcus iniae. S iniae Study Group. N Engl J Med. 1997;337:589-94.
-
(1997)
N Engl J Med
, vol.337
, pp. 589-594
-
-
Weinstein, M.R.1
Litt, M.2
Kertesz, D.A.3
Wyper, P.4
Rose, D.5
Coulter, M.6
McGeer, A.7
Facklam, R.8
Ostach, C.9
Willey, B.M.10
-
12
-
-
33750141751
-
Fish intake, contaminants, and human health: evaluating the risks and the benefits
-
Mozaffarian D, Rimm EB. Fish intake, contaminants, and human health: evaluating the risks and the benefits. JAMA. 2006;296:1885-99.
-
(2006)
JAMA
, vol.296
, pp. 1885-1899
-
-
Mozaffarian, D.1
Rimm, E.B.2
-
13
-
-
43249101759
-
Maternal fish intake during pregnancy, blood mercury levels, and child cognition at age 3 years in a US cohort
-
Oken E, Radesky JS, Wright RO, Bellinger DC, Amarasiriwardena CJ, Kleinman KP, Hu H, Gillman MW. Maternal fish intake during pregnancy, blood mercury levels, and child cognition at age 3 years in a US cohort. Am J Epidemiol. 2008;167:1171-81.
-
(2008)
Am J Epidemiol
, vol.167
, pp. 1171-1181
-
-
Oken, E.1
Radesky, J.S.2
Wright, R.O.3
Bellinger, D.C.4
Amarasiriwardena, C.J.5
Kleinman, K.P.6
Hu, H.7
Gillman, M.W.8
-
14
-
-
26944501174
-
Maternal fish consumption during pregnancy and risk of early childhood asthma
-
Salam MT, Li YF, Langholz B, Gilliland FD. Maternal fish consumption during pregnancy and risk of early childhood asthma. J Asthma. 2005;42:513-8.
-
(2005)
J Asthma
, vol.42
, pp. 513-518
-
-
Salam, M.T.1
Li, Y.F.2
Langholz, B.3
Gilliland, F.D.4
-
15
-
-
77953196684
-
Maternal and perinatal characteristics and the risk of cow's milk allergy in infants up to 2 years of age: a case-control study nested in the Finnish population
-
Metsala J, Lundqvist A, Kaila M, Gissler M, Klaukka T, Virtanen SM. Maternal and perinatal characteristics and the risk of cow's milk allergy in infants up to 2 years of age: a case-control study nested in the Finnish population. Am J Epidemiol. 2010;171:1310-6.
-
(2010)
Am J Epidemiol
, vol.171
, pp. 1310-1316
-
-
Metsala, J.1
Lundqvist, A.2
Kaila, M.3
Gissler, M.4
Klaukka, T.5
Virtanen, S.M.6
-
16
-
-
65549144320
-
The impact of caesarean delivery and type of feeding on cow's milk allergy in infants and subsequent development of allergic march in childhood
-
Sanchez-Valverde F, Gil F, Martinez D, Fernandez B, Aznal E, Oscoz M, Olivera JE. The impact of caesarean delivery and type of feeding on cow's milk allergy in infants and subsequent development of allergic march in childhood. Allergy. 2009;64:884-9.
-
(2009)
Allergy
, vol.64
, pp. 884-889
-
-
Sanchez-Valverde, F.1
Gil, F.2
Martinez, D.3
Fernandez, B.4
Aznal, E.5
Oscoz, M.6
Olivera, J.E.7
-
17
-
-
0032974177
-
Fecal microflora in healthy infants born by different methods of delivery: permanent changes in intestinal flora after cesarean delivery
-
Gronlund MM, Lehtonen OP, Eerola E, Kero P. Fecal microflora in healthy infants born by different methods of delivery: permanent changes in intestinal flora after cesarean delivery. J Pediatr Gastroenterol Nutr. 1999;28:19-25.
-
(1999)
J Pediatr Gastroenterol Nutr
, vol.28
, pp. 19-25
-
-
Gronlund, M.M.1
Lehtonen, O.P.2
Eerola, E.3
Kero, P.4
-
18
-
-
84996606991
-
Distinct patterns in human milk microbiota and fatty acid profiles across specific geographic locations
-
Kumar H, du Toit E, Kulkarni A, Aakko J, Linderborg KM, Zhang Y, Nicol MP, Isolauri E, Yang B, Collado MC, Salminen S. Distinct patterns in human milk microbiota and fatty acid profiles across specific geographic locations. Front Microbiol. 2016;7:1619.
-
(2016)
Front Microbiol
, vol.7
, pp. 1619
-
-
Kumar, H.1
du Toit, E.2
Kulkarni, A.3
Aakko, J.4
Linderborg, K.M.5
Zhang, Y.6
Nicol, M.P.7
Isolauri, E.8
Yang, B.9
Collado, M.C.10
Salminen, S.11
-
19
-
-
65549095153
-
Plant growth-promoting and rhizosphere-competent Acinetobacter rhizosphaerae strain BIHB 723 from the cold deserts of the Himalayas
-
Gulati A, Vyas P, Rahi P, Kasana RC. Plant growth-promoting and rhizosphere-competent Acinetobacter rhizosphaerae strain BIHB 723 from the cold deserts of the Himalayas. Curr Microbiol. 2009;58:371-7.
-
(2009)
Curr Microbiol
, vol.58
, pp. 371-377
-
-
Gulati, A.1
Vyas, P.2
Rahi, P.3
Kasana, R.C.4
-
20
-
-
27644445079
-
The emergence of multidrug resistant Acinetobacter species: a major concern in the hospital setting
-
Hanlon GW. The emergence of multidrug resistant Acinetobacter species: a major concern in the hospital setting. Lett Appl Microbiol. 2005;41:375-8.
-
(2005)
Lett Appl Microbiol
, vol.41
, pp. 375-378
-
-
Hanlon, G.W.1
-
21
-
-
85009952121
-
Genome sequence of a Clostridium neonatale strain isolated in a Canadian neonatal intensive care unit
-
Benamar S, Cassir N, La Scola B. Genome sequence of a Clostridium neonatale strain isolated in a Canadian neonatal intensive care unit. Genome Announc. 2016;4:e01431-15.
-
(2016)
Genome Announc
, vol.4
-
-
Benamar, S.1
Cassir, N.2
La Scola, B.3
-
22
-
-
84962118696
-
Burden of invasive Staphylococcus aureus infections in hospitalized infants
-
Ericson JE, Popoola VO, Smith PB, Benjamin DK, Fowler VG, Benjamin DK Jr, Clark RH, Milstone AM. Burden of invasive Staphylococcus aureus infections in hospitalized infants. JAMA Pediatr. 2015;169:1105-11.
-
(2015)
JAMA Pediatr
, vol.169
, pp. 1105-1111
-
-
Ericson, J.E.1
Popoola, V.O.2
Smith, P.B.3
Benjamin, D.K.4
Fowler, V.G.5
Benjamin, D.K.6
Clark, R.H.7
Milstone, A.M.8
-
23
-
-
0023616914
-
Coagulase-negative staphylococci as true pathogens in newborn infants: a cohort study
-
Schmidt BK, Kirpalani HM, Corey M, Low DE, Philip AG, Ford-Jones EL. Coagulase-negative staphylococci as true pathogens in newborn infants: a cohort study. Pediatr Infect Dis J. 1987;6:1026-31.
-
(1987)
Pediatr Infect Dis J
, vol.6
, pp. 1026-1031
-
-
Schmidt, B.K.1
Kirpalani, H.M.2
Corey, M.3
Low, D.E.4
Philip, A.G.5
Ford-Jones, E.L.6
-
24
-
-
84962381601
-
Association of cesarean delivery and formula supplementation with the intestinal microbiome of 6-week-old infants
-
Madan JC, Hoen AG, Lundgren SN, et al. Association of cesarean delivery and formula supplementation with the intestinal microbiome of 6-week-old infants. JAMA Pediatr. 2016;170:212-9.
-
(2016)
JAMA Pediatr
, vol.170
, pp. 212-219
-
-
Madan, J.C.1
Hoen, A.G.2
Lundgren, S.N.3
-
25
-
-
0021885668
-
Reproducibility and validity of a semiquantitative food frequency questionnaire
-
Willett WC, Sampson L, Stampfer MJ, Rosner B, Bain C, Witschi J, Hennekens CH, Speizer FE. Reproducibility and validity of a semiquantitative food frequency questionnaire. Am J Epidemiol. 1985;122:51-65.
-
(1985)
Am J Epidemiol
, vol.122
, pp. 51-65
-
-
Willett, W.C.1
Sampson, L.2
Stampfer, M.J.3
Rosner, B.4
Bain, C.5
Witschi, J.6
Hennekens, C.H.7
Speizer, F.E.8
-
26
-
-
70349303366
-
Women's dietary patterns change little from before to during pregnancy
-
Crozier SR, Robinson SM, Godfrey KM, Cooper C, Inskip HM. Women's dietary patterns change little from before to during pregnancy. J Nutr. 2009;139:1956-63.
-
(2009)
J Nutr
, vol.139
, pp. 1956-1963
-
-
Crozier, S.R.1
Robinson, S.M.2
Godfrey, K.M.3
Cooper, C.4
Inskip, H.M.5
-
27
-
-
84855490385
-
Rice consumption contributes to arsenic exposure in US women
-
Gilbert-Diamond D, Cottingham KL, Gruber JF, Punshon T, Sayarath V, Gandolfi AJ, Baker ER, Jackson BP, Folt CL, Karagas MR. Rice consumption contributes to arsenic exposure in US women. Proc Natl Acad Sci U S A. 2011;108:20656-60.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 20656-20660
-
-
Gilbert-Diamond, D.1
Cottingham, K.L.2
Gruber, J.F.3
Punshon, T.4
Sayarath, V.5
Gandolfi, A.J.6
Baker, E.R.7
Jackson, B.P.8
Folt, C.L.9
Karagas, M.R.10
-
28
-
-
84885860460
-
In utero arsenic exposure and infant infection in a United States cohort: a prospective study
-
Farzan SF, Korrick S, Li Z, Enelow R, Gandolfi AJ, Madan J, Nadeau K, Karagas MR. In utero arsenic exposure and infant infection in a United States cohort: a prospective study. Environ Res. 2013;126:24-30.
-
(2013)
Environ Res
, vol.126
, pp. 24-30
-
-
Farzan, S.F.1
Korrick, S.2
Li, Z.3
Enelow, R.4
Gandolfi, A.J.5
Madan, J.6
Nadeau, K.7
Karagas, M.R.8
-
29
-
-
84864339457
-
Prepregnancy adherence to dietary patterns and lower risk of gestational diabetes mellitus
-
Tobias DK, Zhang C, Chavarro J, Bowers K, Rich-Edwards J, Rosner B, Mozaffarian D, Hu FB. Prepregnancy adherence to dietary patterns and lower risk of gestational diabetes mellitus. Am J Clin Nutr. 2012;96:289-95.
-
(2012)
Am J Clin Nutr
, vol.96
, pp. 289-295
-
-
Tobias, D.K.1
Zhang, C.2
Chavarro, J.3
Bowers, K.4
Rich-Edwards, J.5
Rosner, B.6
Mozaffarian, D.7
Hu, F.B.8
-
30
-
-
77955067191
-
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
-
Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, et al. Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags. BMC Microbiol. 2010;10:206.
-
(2010)
BMC Microbiol
, vol.10
, pp. 206
-
-
Wu, G.D.1
Lewis, J.D.2
Hoffmann, C.3
Chen, Y.Y.4
Knight, R.5
Bittinger, K.6
Hwang, J.7
Chen, J.8
Berkowsky, R.9
Nessel, L.10
-
31
-
-
84936929376
-
Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects
-
Huse SM, Young VB, Morrison HG, Antonopoulos DA, Kwon J, Dalal S, Arrieta R, Hubert NA, Shen L, Vineis JH, et al. Comparison of brush and biopsy sampling methods of the ileal pouch for assessment of mucosa-associated microbiota of human subjects. Microbiome. 2014;2:5.
-
(2014)
Microbiome
, vol.2
, pp. 5
-
-
Huse, S.M.1
Young, V.B.2
Morrison, H.G.3
Antonopoulos, D.A.4
Kwon, J.5
Dalal, S.6
Arrieta, R.7
Hubert, N.A.8
Shen, L.9
Vineis, J.H.10
-
32
-
-
84929484308
-
Sewage reflects the microbiomes of human populations
-
Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML. Sewage reflects the microbiomes of human populations. MBio. 2015;6:e02574.
-
(2015)
MBio
, vol.6
-
-
Newton, R.J.1
McLellan, S.L.2
Dila, D.K.3
Vineis, J.H.4
Morrison, H.G.5
Eren, A.M.6
Sogin, M.L.7
-
33
-
-
84879138105
-
A filtering method to generate high quality short reads using illumina paired-end technology
-
Eren AM, Vineis JH, Morrison HG, Sogin ML. A filtering method to generate high quality short reads using illumina paired-end technology. PLoS One. 2013;8:e66643.
-
(2013)
PLoS One
, vol.8
-
-
Eren, A.M.1
Vineis, J.H.2
Morrison, H.G.3
Sogin, M.L.4
-
34
-
-
85049528183
-
-
Vsearch: VSEARCH 1.4. 0. Zenodo, European Organization for Nuclear Research, Geneva
-
Rognes T, Mahé F, Flouri T, McDonald D: Vsearch: VSEARCH 1.4. 0. Zenodo, European Organization for Nuclear Research, Geneva 2015.
-
(2015)
-
-
Rognes, T.1
Mahé, F.2
Flouri, T.3
McDonald, D.4
-
35
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335-6.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
-
36
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460-1.
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
37
-
-
75249107844
-
PyNAST: a flexible tool for aligning sequences to a template alignment
-
Caporaso JG, Bittinger K, Bushman FD, DeSantis TZ, Andersen GL, Knight R. PyNAST: a flexible tool for aligning sequences to a template alignment. Bioinformatics. 2010;26:266-7.
-
(2010)
Bioinformatics
, vol.26
, pp. 266-267
-
-
Caporaso, J.G.1
Bittinger, K.2
Bushman, F.D.3
DeSantis, T.Z.4
Andersen, G.L.5
Knight, R.6
-
38
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL. Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol. 2006;72:5069-72.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
39
-
-
84857122937
-
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea
-
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, Andersen GL, Knight R, Hugenholtz P. An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J. 2012;6:610-8.
-
(2012)
ISME J
, vol.6
, pp. 610-618
-
-
McDonald, D.1
Price, M.N.2
Goodrich, J.3
Nawrocki, E.P.4
DeSantis, T.Z.5
Probst, A.6
Andersen, G.L.7
Knight, R.8
Hugenholtz, P.9
-
40
-
-
84355166737
-
Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
-
Werner JJ, Koren O, Hugenholtz P, DeSantis TZ, Walters WA, Caporaso JG, Angenent LT, Knight R, Ley RE. Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys. ISME J. 2012;6:94-103.
-
(2012)
ISME J
, vol.6
, pp. 94-103
-
-
Werner, J.J.1
Koren, O.2
Hugenholtz, P.3
DeSantis, T.Z.4
Walters, W.A.5
Caporaso, J.G.6
Angenent, L.T.7
Knight, R.8
Ley, R.E.9
-
41
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One. 2010;5:e9490.
-
(2010)
PLoS One
, vol.5
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
42
-
-
84863304598
-
R: a language and environment for statistical computing [online]
-
Vienna: R Foundation for Statistical Computing
-
R Core Team. R: a language and environment for statistical computing [online]. Vienna: R Foundation for Statistical Computing; 2015.
-
(2015)
-
-
-
43
-
-
84865082160
-
Associating microbiome composition with environmental covariates using generalized UniFrac distances
-
Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, Collman RG, Bushman FD, Li H. Associating microbiome composition with environmental covariates using generalized UniFrac distances. Bioinformatics. 2012;28:2106-13.
-
(2012)
Bioinformatics
, vol.28
, pp. 2106-2113
-
-
Chen, J.1
Bittinger, K.2
Charlson, E.S.3
Hoffmann, C.4
Lewis, J.5
Wu, G.D.6
Collman, R.G.7
Bushman, F.D.8
Li, H.9
-
44
-
-
85049496160
-
-
Package 'GUniFrac'
-
Chen J: Package 'GUniFrac'. 2012.
-
(2012)
-
-
Chen, J.1
-
45
-
-
84906067495
-
Package 'vegan'
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O'Hara R, Simpson GL, Solymos P, Stevens MHH, Wagner H. Package 'vegan'. Community ecology package, version. 2015:2.2-1.
-
(2015)
Community ecology package, version
, vol.2
, pp. 2-1
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
46
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, et al. Enterotypes of the human gut microbiome. Nature. 2011;473:174-80.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
-
47
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, et al. Linking long-term dietary patterns with gut microbial enterotypes. Science. 2011;334:105-8.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
Bewtra, M.7
Knights, D.8
Walters, W.A.9
Knight, R.10
-
49
-
-
0001677717
-
Controlling the false discovery rate: a practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B Methodol. 1995;57:289-300.
-
(1995)
J R Stat Soc Ser B Methodol
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
|