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Volumn , Issue , 2008, Pages 3-25

Towards Automatic Generation of 3D Models of Biological Objects Based on Serial Sections

Author keywords

Geometry reconstruction; neural nets; registration; segmentation; surface representations

Indexed keywords

GENE EXPRESSION; GEOMETRY; IMAGE RECONSTRUCTION; SURFACE RECONSTRUCTION; THREE DIMENSIONAL COMPUTER GRAPHICS;

EID: 85049187628     PISSN: 16123786     EISSN: 2197666X     Source Type: Book Series    
DOI: 10.1007/978-3-540-72630-2_1     Document Type: Chapter
Times cited : (10)

References (56)
  • 1
    • 10744223881 scopus 로고    scopus 로고
    • A Multimodal, Multidimensional Atlas of the C57BL/6J Mouse Brain
    • A. MacKenzie-Graham et al. A Multimodal, Multidimensional Atlas of the C57BL/6J Mouse Brain. J. Anatomy, 204(2):93–102, 2004.
    • (2004) J. Anatomy , vol.204 , Issue.2 , pp. 93-102
    • Mackenzie-Graham, A.1
  • 4
    • 84879865044 scopus 로고    scopus 로고
    • Towards Automatic Segmentation of Serial High-Resolution Images
    • Springer
    • C. Brüß, M. Strickert, and U. Seiffert. Towards Automatic Segmentation of Serial High-Resolution Images. In Proc. BVM Workshop, pages 126– 130. Springer, 2006.
    • (2006) Proc. BVM Workshop , pp. 126-130
    • Brüß, C.1    Strickert, M.2    Seiffert, U.3
  • 5
    • 33744905662 scopus 로고    scopus 로고
    • Implementation of MLP Networks Running Backpropagation on Various Parallel Computer Hardware Using MPI
    • Ahmad Lotfi, editor
    • T. Czauderna and U. Seiffert. Implementation of MLP Networks Running Backpropagation on Various Parallel Computer Hardware Using MPI. In Ahmad Lotfi, editor, Proc. 5th Int. Conf. Recent Advances in Soft Computing (RASC), pages 116–121, 2004.
    • (2004) Proc. 5Th Int. Conf. Recent Advances in Soft Computing (RASC) , pp. 116-121
    • Czauderna, T.1    Seiffert, U.2
  • 8
    • 0035871424 scopus 로고    scopus 로고
    • Three-Dimensional Digital Mouse Atlas Using High-Resolution MRI
    • M. Dhenain, S.W. Ruffins, and R.E. Jacobs. Three-Dimensional Digital Mouse Atlas Using High-Resolution MRI. Developmental Biology, 232(2):458–470, 2001.
    • (2001) Developmental Biology , vol.232 , Issue.2 , pp. 458-470
    • Dhenain, M.1    Ruffins, S.W.2    Jacobs, R.E.3
  • 9
    • 0033454590 scopus 로고    scopus 로고
    • Fast Inversion of Matrices Arising in Image Processing
    • B. Fischer and J. Modersitzki. Fast Inversion of Matrices Arising in Image Processing. Numerical Algorithms, 22:1–11, 1999.
    • (1999) Numerical Algorithms , vol.22 , pp. 1-11
    • Fischer, B.1    Modersitzki, J.2
  • 11
    • 0030720201 scopus 로고    scopus 로고
    • Surface Simplification Using Quadric Error Metrics
    • M. Garland and P.S. Heckbert. Surface Simplification Using Quadric Error Metrics. In SIGGRAPH’97 Conf. Proc., pages 209–216, 1997.
    • (1997) SIGGRAPH’97 Conf. Proc , pp. 209-216
    • Garland, M.1    Heckbert, P.S.2
  • 12
    • 28444467766 scopus 로고    scopus 로고
    • NMR Imaging of Developing Barley Grains
    • S.M. Glidewell. NMR Imaging of Developing Barley Grains. J. Cereal Science, 43:70–78, 2006.
    • (2006) J. Cereal Science , vol.43 , pp. 70-78
    • Glidewell, S.M.1
  • 13
    • 85138473615 scopus 로고    scopus 로고
    • R.C. Gonzalez and R.E. Woods. Digital Image Processing. Prentice-Hall, Upper Sadle River, New Jersey, 2nd ed. edition, 2002.
    • Gonzalez, R.C.1    Woods, R.E.2
  • 15
    • 0038176512 scopus 로고    scopus 로고
    • Old Botanical Techniques for New Microscopes
    • J. Haseloff. Old Botanical Techniques for New Microscopes. Biotech-niques, 34:1174–1182, 2003.
    • (2003) Biotech-Niques , vol.34 , pp. 1174-1182
    • Haseloff, J.1
  • 16
    • 12844250052 scopus 로고    scopus 로고
    • Supervised Neural Gas with General Similarity Measure
    • B. Hammer, M. Strickert, and T. Villmann. Supervised Neural Gas with General Similarity Measure. Neural Processing Letters, 21(1): 21–44, 2005.
    • (2005) Neural Processing Letters , vol.21 , Issue.1 , pp. 21-44
    • Hammer, B.1    Strickert, M.2    Villmann, T.3
  • 19
    • 55449133888 scopus 로고    scopus 로고
    • A Digital Atlas to Characterize the Mouse Brain Transcriptome
    • J.P. Carson et al. A Digital Atlas to Characterize the Mouse Brain Transcriptome. PLoS Computational Biology, 1(4), 2005.
    • (2005) Plos Computational Biology , vol.1 , Issue.4
    • Carson, J.P.1
  • 22
    • 0002746013 scopus 로고
    • A 3D Anatomical Atlas Based on a Volume Model
    • K. H. Höhne et al. A 3D Anatomical Atlas Based on a Volume Model. IEEE Computer Graphics Applications, 12(4):72–78, 1992.
    • (1992) IEEE Computer Graphics Applications , vol.12 , Issue.4 , pp. 72-78
    • Höhne, K.H.1
  • 23
    • 33749251456 scopus 로고    scopus 로고
    • Visualizing Plant Development and Gene Expression in Three Dimensions Using Optical Projection Tomography
    • K. Lee et al. Visualizing Plant Development and Gene Expression in Three Dimensions Using Optical Projection Tomography. The Plant Cell, 18:2145–2156, 2006.
    • (2006) The Plant Cell , vol.18 , pp. 2145-2156
    • Lee, K.1
  • 24
    • 0036217148 scopus 로고    scopus 로고
    • Structural Details in Soybeans: A New Three-dimensional Visualization Method
    • H. Kuensting, Y. Ogawa, and J. Sugiyama. Structural Details in Soybeans: A New Three-dimensional Visualization Method. J. Food Science, 67(2):721–72, 2002.
    • (2002) J. Food Science , vol.67 , Issue.2 , pp. 721-772
    • Kuensting, H.1    Ogawa, Y.2    Sugiyama, J.3
  • 25
    • 0000101380 scopus 로고
    • Marching Cubes: A High Resolution 3D Surface Construction Algorithm
    • W.E. Lorensen and H.E. Cline. Marching Cubes: A High Resolution 3D Surface Construction Algorithm. In Proc. ACM SIGGRAPH’87, volume 21(4), pages 1631–169, 1987.
    • (1987) Proc. ACM SIGGRAPH’87 , pp. 1631-2169
    • Lorensen, W.E.1    Cline, H.E.2
  • 26
    • 0033355023 scopus 로고    scopus 로고
    • Multiresolution techniques for interactive texture-based volume visualization
    • David S. Ebert, Markus Gross, and Bernd Hamann, editors, California, IEEE, IEEE Computer Society Press
    • E.C. LaMar, B. Hamann, and K.I. Joy. Multiresolution techniques for interactive texture-based volume visualization. In David S. Ebert, Markus Gross, and Bernd Hamann, editors, IEEE Visualization ’99, pages 355– 361, Los Alamitos, California, 1999. IEEE, IEEE Computer Society Press.
    • (1999) IEEE Visualization ’99
    • Lamar, E.C.1    Hamann, B.2    Joy, K.I.3
  • 27
    • 0023331258 scopus 로고
    • An Introduction to Computing with Neural Nets
    • R. P. Lippmann. An Introduction to Computing with Neural Nets. IEEE ASSP Magazine, 4(87):4–23, 1987.
    • (1987) IEEE ASSP Magazine , vol.4 , Issue.87 , pp. 4-23
    • Lippmann, R.P.1
  • 28
    • 0000679068 scopus 로고
    • Three Dimensional Reconstruction from Serial Sections
    • C. Levinthal and R. Ware. Three Dimensional Reconstruction from Serial Sections. Nature, 236:207–210, 1972.
    • (1972) Nature , vol.236 , pp. 207-210
    • Levinthal, C.1    Ware, R.2
  • 29
    • 0030959230 scopus 로고    scopus 로고
    • Computer-Aided 3-D Reconstruction of Serially Sectioned Mouse Embryos: Its Use in Integrating Anatomical Organization. Int’l J
    • M. H. Kaufman et al. Computer-Aided 3-D Reconstruction of Serially Sectioned Mouse Embryos: Its Use in Integrating Anatomical Organization. Int’l J. Developmental Biology, 41(2):223–33, 1997.
    • (1997) Developmental Biology , vol.41 , Issue.2 , pp. 223-233
    • Kaufman, M.H.1
  • 32
    • 1842320712 scopus 로고
    • Improvements in semiautomated serial-section reconstruction and visualization of neural tissue from TEM images
    • K. Montgomery and M.D. Ross. Improvements in semiautomated serial-section reconstruction and visualization of neural tissue from TEM images. In SPIE Electronic Imaging, 3D Microscopy conf. proc., pages 264–267, 1994.
    • (1994) SPIE Electronic Imaging, 3D Microscopy Conf. Proc , pp. 264-267
    • Montgomery, K.1    Ross, M.D.2
  • 33
    • 0032008619 scopus 로고    scopus 로고
    • A Survey of Medical Image Registration
    • J. Maintz and M. Viergever. A Survey of Medical Image Registration. Medical Image Analysis, 2(1):1–36, 1998.
    • (1998) Medical Image Analysis , vol.2 , Issue.1 , pp. 1-36
    • Maintz, J.1    Viergever, M.2
  • 35
    • 10744232767 scopus 로고    scopus 로고
    • EMAP and EMAGE: A Framework for Understanding Spatially Organized Data
    • R. Baldock et al. EMAP and EMAGE: A Framework for Understanding Spatially Organized Data. Neuroinformatics, 1(4):309–325, 2003.
    • (2003) Neuroinformatics , vol.1 , Issue.4 , pp. 309-325
    • Baldock, R.1
  • 36
    • 25444470982 scopus 로고    scopus 로고
    • A Three-Dimensional Average-Shape Atlas of the Honeybee Brain and its Applications
    • R. 05
    • [R. 05] R. Brandt et al. A Three-Dimensional Average-Shape Atlas of the Honeybee Brain and its Applications. J. Comparative Neurology, 492(1): 1–19, 2005.
    • (2005) J. Comparative Neurology , vol.492 , Issue.1 , pp. 1-19
    • Brandt, R.1
  • 38
    • 0033611527 scopus 로고    scopus 로고
    • A Quantitative Three-Dimensional Model of the Drosophila Optic Lobes
    • K. Rein, M. Zöckler, and M. Heisenberg. A Quantitative Three-Dimensional Model of the Drosophila Optic Lobes. Current Biology, 9:93–96, 1999.
    • (1999) Current Biology , vol.9 , pp. 93-96
    • Rein, K.1    Zöckler, M.2    Heisenberg, M.3
  • 39
    • 79953050623 scopus 로고    scopus 로고
    • Super-Fast Elastic Registration of Histologic Images of a Whole Rat Brain for Three-Dimensional Reconstruction
    • S. Wirtz et al. Super-Fast Elastic Registration of Histologic Images of a Whole Rat Brain for Three-Dimensional Reconstruction. In Proc. SPIE 2004, Medical Imaging, 2004.
    • (2004) Proc. SPIE 2004, Medical Imaging
    • Wirtz, S.1
  • 40
    • 85138477367 scopus 로고    scopus 로고
    • Three-Dimensional Digital Models of Developing Barley Grains for the Visualisation of Expression Patterns
    • S. Gubatz et al. Three-Dimensional Digital Models of Developing Barley Grains for the Visualisation of Expression Patterns. In prep., 2007.
    • (2007) Prep.
    • Gubatz, S.1
  • 41
    • 1542786199 scopus 로고    scopus 로고
    • Artificial Neural Networks on Massively Parallel Computer Hardware
    • U. Seiffert. Artificial Neural Networks on Massively Parallel Computer Hardware. Neurocomputing, 57:135–150, 2004.
    • (2004) Neurocomputing , vol.57 , pp. 135-150
    • Seiffert, U.1
  • 43
    • 0031028413 scopus 로고    scopus 로고
    • Automated Three-Dimensional Registration of Magnetic Resonance and Positron Emission Tomography Brain Images by Multiresolution Optimization of Voxel Similarity Measures
    • C. Studholme, D. L. G. Hill, and D. J. Hawkes. Automated Three-Dimensional Registration of Magnetic Resonance and Positron Emission Tomography Brain Images by Multiresolution Optimization of Voxel Similarity Measures. Medical Physics, 24(1):25–35, 1997.
    • (1997) Medical Physics , vol.24 , Issue.1 , pp. 25-35
    • Studholme, C.1    Hill, D.L.G.2    Hawkes, D.J.3
  • 44
    • 1542648084 scopus 로고    scopus 로고
    • Some Applications of an Automatically Built 3D Morphometric Skull Atlas
    • G. Subsol, J.-Ph. Thirion, and N. Ayache. Some Applications of an Automatically Built 3D Morphometric Skull Atlas. In Computer Assisted Radiology, pages 339–344, 1996.
    • (1996) Computer Assisted Radiology , pp. 339-344
    • Subsol, G.1    Thirion, J.-P.2    Ayache, N.3
  • 47
    • 0030743676 scopus 로고    scopus 로고
    • External Marker-Based Automatic Congruencing: A New Method of 3D Reconstruction from Serial Sections
    • J. Streicher, W.J. Weninger, and G.B. Müller. External Marker-Based Automatic Congruencing: A New Method of 3D Reconstruction from Serial Sections. The Anatomical Record, 248(4):583–602, 1997.
    • (1997) The Anatomical Record , vol.248 , Issue.4 , pp. 583-602
    • Streicher, J.1    Weninger, W.J.2    Müller, G.B.3
  • 48
    • 33745474044 scopus 로고    scopus 로고
    • R. Szeliski. Image Alignment and Stitching. In N. Paragios, Y. Chen, and O. Faugeras, editors, Handbook of Mathematical Models in Computer Vision, pages 273–292. Springer, 2005.
    • (2005) Image Alignment and Stitching
    • Szeliski, R.1
  • 50
    • 26844553603 scopus 로고    scopus 로고
    • Three-Dimensional Reconstruction and Quantification of Cervical Carcinoma Invasion Fronts from Histological Serial Sections
    • U. D. Braumann et al. Three-Dimensional Reconstruction and Quantification of Cervical Carcinoma Invasion Fronts from Histological Serial Sections. IEEE Transactions on Medical Imaging, 24(10):1286–1307, 2005.
    • (2005) IEEE Transactions on Medical Imaging , vol.24 , Issue.10 , pp. 1286-1307
    • Braumann, U.D.1
  • 52
    • 84861349678 scopus 로고    scopus 로고
    • Reducing Aliasing Artifacts in Iso-Surfaces of Binary Volumes
    • ACM Press
    • R.T. Whitaker. Reducing Aliasing Artifacts in Iso-Surfaces of Binary Volumes. In Proc. 2000 IEEE Symposium on Volume Visualization, pages 23–32. ACM Press, 2000.
    • (2000) Proc. 2000 IEEE Symposium on Volume Visualization , pp. 23-32
    • Whitaker, R.T.1
  • 54
    • 17744377172 scopus 로고    scopus 로고
    • Advanced Technique for Three-Dimensional Visualization of Compound Distributions in a Rice Kernel
    • Y. Ogawa et al. Advanced Technique for Three-Dimensional Visualization of Compound Distributions in a Rice Kernel. J. Agricultural and Food Chemistry, 49(2):736–740, 2001.
    • (2001) J. Agricultural and Food Chemistry , vol.49 , Issue.2 , pp. 736-740
    • Ogawa, Y.1
  • 55
    • 0043237770 scopus 로고    scopus 로고
    • Image registration methods: A survey
    • October
    • B. Zitova and J. Flusser. Image registration methods: a survey. Image and Vision Computing, 21(11):977–1000, October 2003.
    • (2003) Image and Vision Computing , vol.21 , Issue.11 , pp. 977-1000
    • Zitova, B.1    Flusser, J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.