메뉴 건너뛰기




Volumn 174, Issue 3, 2018, Pages 744-757.e24

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus

Author keywords

genome structure; higher order nuclear structure; multi way interactions; nuclear organization; nuclear speckle; Nuclear structure; nucleolus; RNA DNA interactions; SPRITE

Indexed keywords

GENOMIC DNA; RIBOSOME RNA; DNA;

EID: 85047950104     PISSN: 00928674     EISSN: 10974172     Source Type: Journal    
DOI: 10.1016/j.cell.2018.05.024     Document Type: Article
Times cited : (554)

References (43)
  • 2
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • Branco, M.R., Pombo, A., Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol., 4, 2006, e138.
    • (2006) PLoS Biol. , vol.4 , pp. e138
    • Branco, M.R.1    Pombo, A.2
  • 5
    • 84865658810 scopus 로고    scopus 로고
    • P-bodies and stress granules: possible roles in the control of translation and mRNA degradation
    • Decker, C.J., Parker, R., P-bodies and stress granules: possible roles in the control of translation and mRNA degradation. Cold Spring Harb. Perspect. Biol., 4, 2012, a012286.
    • (2012) Cold Spring Harb. Perspect. Biol. , vol.4 , pp. a012286
    • Decker, C.J.1    Parker, R.2
  • 6
    • 84996593753 scopus 로고    scopus 로고
    • Mapping the 3D genome: Aiming for consilience
    • Dekker, J., Mapping the 3D genome: Aiming for consilience. Nat. Rev. Mol. Cell Biol. 17 (2016), 741–742.
    • (2016) Nat. Rev. Mol. Cell Biol. , vol.17 , pp. 741-742
    • Dekker, J.1
  • 7
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon, J.R., Selvaraj, S., Yue, F., Kim, A., Li, Y., Shen, Y., Hu, M., Liu, J.S., Ren, B., Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485 (2012), 376–380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 11
    • 84876838711 scopus 로고    scopus 로고
    • The hierarchy of the 3D genome
    • Gibcus, J.H., Dekker, J., The hierarchy of the 3D genome. Mol. Cell 49 (2013), 773–782.
    • (2013) Mol. Cell , vol.49 , pp. 773-782
    • Gibcus, J.H.1    Dekker, J.2
  • 12
    • 84992202526 scopus 로고    scopus 로고
    • Closing the loop: 3C versus DNA FISH
    • Giorgetti, L., Heard, E., Closing the loop: 3C versus DNA FISH. Genome Biol., 17, 2016, 215.
    • (2016) Genome Biol. , vol.17 , pp. 215
    • Giorgetti, L.1    Heard, E.2
  • 13
    • 78349274999 scopus 로고    scopus 로고
    • Hsp70 gene association with nuclear speckles is Hsp70 promoter specific
    • Hu, Y., Plutz, M., Belmont, A.S., Hsp70 gene association with nuclear speckles is Hsp70 promoter specific. J. Cell Biol. 191 (2010), 711–719.
    • (2010) J. Cell Biol. , vol.191 , pp. 711-719
    • Hu, Y.1    Plutz, M.2    Belmont, A.S.3
  • 14
    • 33847185603 scopus 로고    scopus 로고
    • A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains
    • Hutchinson, J.N., Ensminger, A.W., Clemson, C.M., Lynch, C.R., Lawrence, J.B., Chess, A., A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains. BMC Genomics, 8, 2007, 39.
    • (2007) BMC Genomics , vol.8 , pp. 39
    • Hutchinson, J.N.1    Ensminger, A.W.2    Clemson, C.M.3    Lynch, C.R.4    Lawrence, J.B.5    Chess, A.6
  • 15
    • 84899796207 scopus 로고    scopus 로고
    • Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
    • Jonkers, I., Kwak, H., Lis, J.T., Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons. eLife, 3, 2014, e02407.
    • (2014) eLife , vol.3 , pp. e02407
    • Jonkers, I.1    Kwak, H.2    Lis, J.T.3
  • 16
    • 84901194830 scopus 로고    scopus 로고
    • HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation
    • Khanna, N., Hu, Y., Belmont, A.S., HSP70 transgene directed motion to nuclear speckles facilitates heat shock activation. Curr. Biol. 24 (2014), 1138–1144.
    • (2014) Curr. Biol. , vol.24 , pp. 1138-1144
    • Khanna, N.1    Hu, Y.2    Belmont, A.S.3
  • 17
    • 84925273803 scopus 로고    scopus 로고
    • Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data
    • Li, W., Gong, K., Li, Q., Alber, F., Zhou, X.J., Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data. Bioinformatics 31 (2015), 960–962.
    • (2015) Bioinformatics , vol.31 , pp. 960-962
    • Li, W.1    Gong, K.2    Li, Q.3    Alber, F.4    Zhou, X.J.5
  • 19
    • 0037049548 scopus 로고    scopus 로고
    • Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH
    • Mahy, N.L., Perry, P.E., Bickmore, W.A., Gene density and transcription influence the localization of chromatin outside of chromosome territories detectable by FISH. J. Cell Biol. 159 (2002), 753–763.
    • (2002) J. Cell Biol. , vol.159 , pp. 753-763
    • Mahy, N.L.1    Perry, P.E.2    Bickmore, W.A.3
  • 25
    • 84897042327 scopus 로고    scopus 로고
    • Nucleolus and nuclear periphery: velcro for heterochromatin
    • Padeken, J., Heun, P., Nucleolus and nuclear periphery: velcro for heterochromatin. Curr. Opin. Cell Biol. 28 (2014), 54–60.
    • (2014) Curr. Opin. Cell Biol. , vol.28 , pp. 54-60
    • Padeken, J.1    Heun, P.2
  • 28
    • 66149142116 scopus 로고    scopus 로고
    • The perinucleolar compartment
    • Pollock, C., Huang, S., The perinucleolar compartment. J. Cell. Biochem. 107 (2009), 189–193.
    • (2009) J. Cell. Biochem. , vol.107 , pp. 189-193
    • Pollock, C.1    Huang, S.2
  • 29
    • 84926189204 scopus 로고    scopus 로고
    • Three-dimensional genome architecture: players and mechanisms
    • Pombo, A., Dillon, N., Three-dimensional genome architecture: players and mechanisms. Nat. Rev. Mol. Cell Biol. 16 (2015), 245–257.
    • (2015) Nat. Rev. Mol. Cell Biol. , vol.16 , pp. 245-257
    • Pombo, A.1    Dillon, N.2
  • 32
    • 84907222725 scopus 로고    scopus 로고
    • RNA and dynamic nuclear organization
    • Rinn, J.L., Guttman, M., RNA and dynamic nuclear organization. Science 345 (2014), 1240–1241.
    • (2014) Science , vol.345 , pp. 1240-1241
    • Rinn, J.L.1    Guttman, M.2
  • 35
    • 0141706933 scopus 로고    scopus 로고
    • Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods
    • Shopland, L.S., Johnson, C.V., Byron, M., McNeil, J., Lawrence, J.B., Clustering of multiple specific genes and gene-rich R-bands around SC-35 domains: evidence for local euchromatic neighborhoods. J. Cell Biol. 162 (2003), 981–990.
    • (2003) J. Cell Biol. , vol.162 , pp. 981-990
    • Shopland, L.S.1    Johnson, C.V.2    Byron, M.3    McNeil, J.4    Lawrence, J.B.5
  • 36
  • 38
    • 84908501892 scopus 로고    scopus 로고
    • Nucleolar tethering mediates pairing between the IgH and Myc loci
    • Strongin, D.E., Groudine, M., Politz, J.C.R., Nucleolar tethering mediates pairing between the IgH and Myc loci. Nucleus 5 (2014), 474–481.
    • (2014) Nucleus , vol.5 , pp. 474-481
    • Strongin, D.E.1    Groudine, M.2    Politz, J.C.R.3
  • 39
    • 0025364752 scopus 로고
    • Variation in the distribution of silver-staining nucleolar organizer regions on the chromosomes of the wild mouse, Mus musculus
    • Suzuki, H., Kurihara, Y., Kanehisa, T., Moriwaki, K., Variation in the distribution of silver-staining nucleolar organizer regions on the chromosomes of the wild mouse, Mus musculus. Mol. Biol. Evol. 7 (1990), 271–282.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 271-282
    • Suzuki, H.1    Kurihara, Y.2    Kanehisa, T.3    Moriwaki, K.4
  • 40
    • 85017465045 scopus 로고    scopus 로고
    • Multiplexed dynamic imaging of genomic loci by combined CRISPR imaging and DNA sequential FISH
    • Takei, Y., Shah, S., Harvey, S., Qi, L.S., Cai, L., Multiplexed dynamic imaging of genomic loci by combined CRISPR imaging and DNA sequential FISH. Biophys. J. 112 (2017), 1773–1776.
    • (2017) Biophys. J. , vol.112 , pp. 1773-1776
    • Takei, Y.1    Shah, S.2    Harvey, S.3    Qi, L.S.4    Cai, L.5
  • 43
    • 84918510740 scopus 로고    scopus 로고
    • Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization
    • Williamson, I., Berlivet, S., Eskeland, R., Boyle, S., Illingworth, R.S., Paquette, D., Dostie, J., Bickmore, W.A., Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization. Genes Dev. 28 (2014), 2778–2791.
    • (2014) Genes Dev. , vol.28 , pp. 2778-2791
    • Williamson, I.1    Berlivet, S.2    Eskeland, R.3    Boyle, S.4    Illingworth, R.S.5    Paquette, D.6    Dostie, J.7    Bickmore, W.A.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.