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Volumn 31, Issue 6, 2015, Pages 960-962

Hi-Corrector: A fast, scalable and memory-efficient package for normalizing large-scale Hi-C data

Author keywords

[No Author keywords available]

Indexed keywords

CHROMATIN;

EID: 84925273803     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu747     Document Type: Article
Times cited : (56)

References (15)
  • 1
    • 58349101743 scopus 로고    scopus 로고
    • A parallel matrix scaling algorithm
    • J.M.L.M., Palma et al. (eds.) Springer, Berlin
    • Amestoy, R.P. et al. (2008) A parallel matrix scaling algorithm. In: J.M.L.M., Palma et al. (eds.) High Performance Computing for Computational Science. Springer, Berlin, pp. 301-313.
    • (2008) High Performance Computing for Computational Science , pp. 301-313
    • Amestoy, R.P.1
  • 2
    • 84900465317 scopus 로고    scopus 로고
    • Three-dimensional modeling of the P. Falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
    • Ay, F. et al. (2014) Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression. Genome Res., 24, 974-988.
    • (2014) Genome Res. , vol.24 , pp. 974-988
    • Ay, F.1
  • 3
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon, J.R. et al. (2012) Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature, 485, 376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1
  • 4
    • 84870463249 scopus 로고    scopus 로고
    • HiCNorm: Removing biases in Hi-C data via Poisson regression
    • Hu, M. et al. (2012) HiCNorm: removing biases in Hi-C data via Poisson regression. Bioinformatics, 28, 3131-3133.
    • (2012) Bioinformatics , vol.28 , pp. 3131-3133
    • Hu, M.1
  • 5
    • 84866997011 scopus 로고    scopus 로고
    • Iterative correction of Hi-C data reveals hallmarks of chromosome organization
    • Imakaev, M. et al. (2012) Iterative correction of Hi-C data reveals hallmarks of chromosome organization. Nat. Methods, 9, 999-1003.
    • (2012) Nat. Methods , vol.9 , pp. 999-1003
    • Imakaev, M.1
  • 6
    • 84887620842 scopus 로고    scopus 로고
    • A high-resolution map of the three-dimensional chromatin interactome in human cells
    • Jin, F. et al. (2013) A high-resolution map of the three-dimensional chromatin interactome in human cells. Nature, 503, 290-294.
    • (2013) Nature , vol.503 , pp. 290-294
    • Jin, F.1
  • 7
    • 84862917808 scopus 로고    scopus 로고
    • Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
    • Kalhor, R. et al. (2012) Genome architectures revealed by tethered chromosome conformation capture and population-based modeling. Nat. Biotechnol., 30, 90-98.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 90-98
    • Kalhor, R.1
  • 8
    • 61849113252 scopus 로고    scopus 로고
    • The Sinkhorn-Knopp algorithm: Convergence and applications
    • Knight, P.A. (2008) The Sinkhorn-Knopp algorithm: convergence and applications. SIAM J. Matrix Anal. Appl., 30, 261-275.
    • (2008) SIAM J. Matrix Anal. Appl. , vol.30 , pp. 261-275
    • Knight, P.A.1
  • 9
    • 84880302753 scopus 로고    scopus 로고
    • A fast algorithm for matrix balancing
    • Knight, P.A. and Ruiz, D. (2012) A fast algorithm for matrix balancing. IMA J. Numer. Anal., 33, 1029-1047.
    • (2012) IMA J. Numer. Anal. , vol.33 , pp. 1029-1047
    • Knight, P.A.1    Ruiz, D.2
  • 10
    • 84887322004 scopus 로고    scopus 로고
    • High-resolution mapping of the spatial organization of a bacterial chromosome
    • Le, T.B.K. et al. (2013) High-resolution mapping of the spatial organization of a bacterial chromosome. Science, 342, 731-734.
    • (2013) Science , vol.342 , pp. 731-734
    • Le, T.B.K.1
  • 11
    • 70349873824 scopus 로고    scopus 로고
    • Comprehensive mapping of long-range interactions reveals folding principles of the human genome
    • Lieberman-Aiden, E. et al. (2009) Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science, 326, 289-293.
    • (2009) Science , vol.326 , pp. 289-293
    • Lieberman-Aiden, E.1
  • 12
    • 84888018217 scopus 로고    scopus 로고
    • Organization of the mitotic chromosome
    • Naumova, N. et al. (2013) Organization of the mitotic chromosome. Science, 342, 948-953.
    • (2013) Science , vol.342 , pp. 948-953
    • Naumova, N.1
  • 13
    • 84907424924 scopus 로고    scopus 로고
    • A statistical approach for inferring the 3D structure of the genome
    • Varoquaux, N. et al. (2014) A statistical approach for inferring the 3D structure of the genome. Bioinformatics, 30, i26-i33.
    • (2014) Bioinformatics , vol.30 , pp. i26-i33
    • Varoquaux, N.1
  • 14
    • 80054984337 scopus 로고    scopus 로고
    • Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
    • Yaffe, E. and Tanay, A. (2011) Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. Nat. Genet., 43, 1059-1065.
    • (2011) Nat. Genet. , vol.43 , pp. 1059-1065
    • Yaffe, E.1    Tanay, A.2
  • 15
    • 34249960181 scopus 로고
    • Vector and parallel computing for matrix balancing
    • Zenios, S.A. and Iu, S.-L. (1990) Vector and parallel computing for matrix balancing. Ann. Oper. Res., 22, 161-180.
    • (1990) Ann. Oper. Res. , vol.22 , pp. 161-180
    • Zenios, S.A.1    Iu, S.-L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.