-
1
-
-
35348968286
-
The human microbiome project
-
PMID:17943116
-
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature 2007; 449:804-10. PMID:17943116; http://dx.doi.org/10.1038/nature06244.
-
(2007)
Nature
, vol.449
, pp. 804-810
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Hamady, M.3
Fraser-Liggett, C.M.4
Knight, R.5
Gordon, J.I.6
-
2
-
-
80051812841
-
The remarkable capacity for gut microbial and host interactions
-
PMID:21646867
-
Nagy-Szakal D, Kellermayer R. The remarkable capacity for gut microbial and host interactions. Gut Microbes 2011; 2:178-82. PMID:21646867; http://dx.doi.org/10.4161/gmic.2.3.16107.
-
(2011)
Gut Microbes
, vol.2
, pp. 178-182
-
-
Nagy-Szakal, D.1
Kellermayer, R.2
-
3
-
-
78649647805
-
Genetic drift. "Omics" as the filtering gateway between environment and phenotype: The inflammatory bowel diseases example
-
PMID:21108388
-
Kellermayer R. Genetic drift. "Omics" as the filtering gateway between environment and phenotype: The inflammatory bowel diseases example. Am J Med Genet A 2010; 152:3022-5. PMID:21108388; http://dx.doi.org/10.1002/ajmg.a.33726.
-
(2010)
Am J Med Genet A
, vol.152
, pp. 3022-3025
-
-
Kellermayer, R.1
-
4
-
-
43549110706
-
Interplay of commensal and pathogenic bacteria, genetic mutations and immunoregulatory defects in the pathogenesis of inflammatory bowel diseases
-
PMID:18479259
-
Packey CD, Sartor RB. Interplay of commensal and pathogenic bacteria, genetic mutations and immunoregulatory defects in the pathogenesis of inflammatory bowel diseases. J Intern Med 2008; 263:597-606. PMID:18479259; http://dx.doi.org/10.1111/j.1365-2796.2008.01962.x.
-
(2008)
J Intern Med
, vol.263
, pp. 597-606
-
-
Packey, C.D.1
Sartor, R.B.2
-
5
-
-
78650097770
-
Genetics in twins with Crohn's disease: Less pronounced than previously believed?
-
PMID:20848478
-
Halfvarson J. Genetics in twins with Crohn's disease: less pronounced than previously believed? Inflamm Bowel Dis 2011; 17:6-12. PMID:20848478; http://dx.doi.org/10.1002/ibd.21295.
-
(2011)
Inflamm Bowel Dis
, vol.17
, pp. 6-12
-
-
Halfvarson, J.1
-
6
-
-
78650095875
-
Epidemiology of pediatric inf lammatory bowel disease: A systematic review of international trends
-
PMID:20564651
-
Benchimol EI, Fortinsky KJ, Gozdyra P, Van den Heuvel M, Van Limbergen J, Griffiths AM. Epidemiology of pediatric inf lammatory bowel disease: a systematic review of international trends. Inflamm Bowel Dis 2011; 17:423-39. PMID:20564651; http://dx.doi.org/10.1002/ibd.21349.
-
(2011)
Inflamm Bowel Dis
, vol.17
, pp. 423-439
-
-
Benchimol, E.I.1
Fortinsky, K.J.2
Gozdyra, P.3
Van den Heuvel, M.4
van Limbergen, J.5
Griffiths, A.M.6
-
7
-
-
77957868697
-
New insights into IBD epidemiology: Are there any lessons for treatment?
-
PMID:20926864
-
Bernstein CN. New insights into IBD epidemiology: Are there any lessons for treatment? Dig Dis 2010; 28:406-10. PMID:20926864; http://dx.doi.org/10.1159/000320394.
-
(2010)
Dig Dis
, vol.28
, pp. 406-410
-
-
Bernstein, C.N.1
-
8
-
-
77953597976
-
Epigenetic maturation in colonic mucosa continues beyond infancy in mice
-
PMID:20197410
-
Kellermayer R, Balasa A, Zhang W, Lee S, Mirza S, Chakravarty A, et al. Epigenetic maturation in colonic mucosa continues beyond infancy in mice. Hum Mol Genet 2010; 19:2168-76. PMID:20197410; http://dx.doi.org/10.1093/hmg/ddq095.
-
(2010)
Hum Mol Genet
, vol.19
, pp. 2168-2176
-
-
Kellermayer, R.1
Balasa, A.2
Zhang, W.3
Lee, S.4
Mirza, S.5
Chakravarty, A.6
-
9
-
-
79954519615
-
Maternal methyl-donor supplementation induces prolonged murine offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes
-
PMID:21296867
-
Schaible TD, Harris RA, Dowd SE, Smith CW, Kellermayer R. Maternal methyl-donor supplementation induces prolonged murine offspring colitis susceptibility in association with mucosal epigenetic and microbiomic changes. Hum Mol Genet 2011; 20:1687-96. PMID:21296867; http://dx.doi.org/10.1093/hmg/ddr044.
-
(2011)
Hum Mol Genet
, vol.20
, pp. 1687-1696
-
-
Schaible, T.D.1
Harris, R.A.2
Dowd, S.E.3
Smith, C.W.4
Kellermayer, R.5
-
10
-
-
0031873353
-
Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice
-
PMID:9707167
-
Wolff GL, Kodell RL, Moore SR, Cooney CA. Maternal epigenetics and methyl supplements affect agouti gene expression in Avy/a mice. FASEB J 1998; 12:949-57. PMID:9707167.
-
(1998)
FASEB J
, vol.12
, pp. 949-957
-
-
Wolff, G.L.1
Kodell, R.L.2
Moore, S.R.3
Cooney, C.A.4
-
11
-
-
65549084897
-
Sequence analysis of percent G + C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria
-
PMID:19351420
-
Krogius-Kurikka L, Kassinen A, Paulin L, Corander J, Mäkivuokko H, Tuimala J, et al. Sequence analysis of percent G + C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria. BMC Microbiol 2009; 9:68. PMID:19351420; http://dx.doi.org/10.1186/1471-2180-9-68.
-
(2009)
BMC Microbiol
, vol.9
, pp. 68
-
-
Krogius-Kurikka, L.1
Kassinen, A.2
Paulin, L.3
Corander, J.4
Mäkivuokko, H.5
Tuimala, J.6
-
12
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
PMID:19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009; 75:7537-41. PMID:19801464; http://dx.doi.org/10.1128/AEM.01541-09.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
-
13
-
-
80052121849
-
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing
-
PMID:21878105
-
Angiuoli SV, Matalka M, Gussman A, Galens K, Vangala M, Riley DR, et al. CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing. BMC Bioinformatics 2011; 12:356. PMID:21878105; http://dx.doi.org/10.1186/1471-2105-12-356.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 356
-
-
Angiuoli, S.V.1
Matalka, M.2
Gussman, A.3
Galens, K.4
Vangala, M.5
Riley, D.R.6
-
14
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
PMID:21700674
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011; 27:2194-200. PMID:21700674; http://dx.doi.org/10.1093/bioinformatics/btr381.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
15
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
PMID:20383131
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010; 7:335-6. PMID:20383131; http://dx.doi.org/10.1038/nmeth.f.303.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
-
16
-
-
66249145772
-
Statistical methods for detecting differentially abundant features in clinical metagenomic samples
-
PMID:19360128
-
White JR, Nagarajan N, Pop M. Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol 2009; 5:1000352. PMID:19360128; http://dx.doi.org/10.1371/journal.pcbi.1000352.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. 1000352
-
-
White, J.R.1
Nagarajan, N.2
Pop, M.3
-
17
-
-
0035082973
-
Different subsets of enteric bacteria induce and perpetuate experimental colitis in rats and mice
-
PMID:11254584
-
Rath HC, Schultz M, Freitag R, Dieleman LA, Li F, Linde HJ, et al. Different subsets of enteric bacteria induce and perpetuate experimental colitis in rats and mice. Infect Immun 2001; 69:2277-85. PMID:11254584; http://dx.doi.org/10.1128/IAI.69.4.2277-85.2001.
-
(2001)
Infect Immun
, vol.69
, pp. 2277-2285
-
-
Rath, H.C.1
Schultz, M.2
Freitag, R.3
Dieleman, L.A.4
Li, F.5
Linde, H.J.6
-
18
-
-
79959496268
-
Diversity of the autochthonous colonic microbiota
-
PMID:21694499
-
Nava GM, Stappenbeck TS. Diversity of the autochthonous colonic microbiota. Gut Microbes 2011; 2:99-104. PMID:21694499; http://dx.doi.org/10.4161/gmic.2.2.15416.
-
(2011)
Gut Microbes
, vol.2
, pp. 99-104
-
-
Nava, G.M.1
Stappenbeck, T.S.2
-
19
-
-
0036140777
-
Mucosal flora in inflammatory bowel disease
-
PMID:11781279
-
Swidsinski A, Ladhoff A, Pernthaler A, Swidsinski S, Loening-Baucke V, Ortner M, et al. Mucosal flora in inflammatory bowel disease. Gastroenterology 2002; 122:44-54. PMID:11781279; http://dx.doi.org/10.1053/gast.2002.30294.
-
(2002)
Gastroenterology
, vol.122
, pp. 44-54
-
-
Swidsinski, A.1
Ladhoff, A.2
Pernthaler, A.3
Swidsinski, S.4
Loening-Baucke, V.5
Ortner, M.6
-
21
-
-
67651151152
-
The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age
-
PMID:19508720
-
Mariat D, Firmesse O, Levenez F, Guimaraes V, Sokol H, Doré J, et al. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol 2009; 9:123. PMID:19508720; http://dx.doi.org/10.1186/1471-2180-9-123.
-
(2009)
BMC Microbiol
, vol.9
, pp. 123
-
-
Mariat, D.1
Firmesse, O.2
Levenez, F.3
Guimaraes, V.4
Sokol, H.5
Doré, J.6
-
22
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
PMID:21205640
-
Atarashi K, Tanoue T, Shima T, Imaoka A, Kuwahara T, Momose Y, et al. Induction of colonic regulatory T cells by indigenous Clostridium species. Science 2011; 331:337-41. PMID:21205640; http://dx.doi.org/10.1126/science.1198469.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
Imaoka, A.4
Kuwahara, T.5
Momose, Y.6
-
23
-
-
72449145776
-
Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses
-
PMID:19735274
-
Sjögren YM, Tomicic S, Lundberg A, Böttcher MF, Björkstén B, Sverremark-Ekström E, et al. Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin Exp Allergy 2009; 39:1842-51. PMID:19735274; http://dx.doi.org/10.1111/j.1365-2222.2009.03326.x.
-
(2009)
Clin Exp Allergy
, vol.39
, pp. 1842-1851
-
-
Sjögren, Y.M.1
Tomicic, S.2
Lundberg, A.3
Böttcher, M.F.4
Björkstén, B.5
Sverremark-Ekström, E.6
-
24
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
PMID:17594176
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO. Development of the human infant intestinal microbiota. PLoS Biol 2007; 5:177. PMID:17594176; http://dx.doi.org/10.1371/journal.pbio.0050177.
-
(2007)
PLoS Biol
, vol.5
, pp. 177
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
25
-
-
78650099316
-
Development of gut microbiota in infants not exposed to medical interventions
-
PMID:21143523
-
Eggesbø M, Moen B, Peddada S, Baird D, Rugtveit J, Midtvedt T, et al. Development of gut microbiota in infants not exposed to medical interventions. APMIS 2011; 119:17-35. PMID:21143523; http://dx.doi.org/10.1111/j.1600-0463.2010.02688.x.
-
(2011)
APMIS
, vol.119
, pp. 17-35
-
-
Eggesbø, M.1
Moen, B.2
Peddada, S.3
Baird, D.4
Rugtveit, J.5
Midtvedt, T.6
-
26
-
-
77955602581
-
Through ageing and beyond: Gut microbiota and inflammatory status in seniors and centenarians
-
PMID:20498852
-
Biagi E, Nylund L, Candela M, Ostan R, Bucci L, Pini E, et al. Through ageing and beyond: gut microbiota and inflammatory status in seniors and centenarians. PLoS One 2010; 5:10667. PMID:20498852; http://dx.doi.org/10.1371/journal.pone.0010667.
-
(2010)
PLoS One
, vol.5
, pp. 10667
-
-
Biagi, E.1
Nylund, L.2
Candela, M.3
Ostan, R.4
Bucci, L.5
Pini, E.6
-
27
-
-
0020052321
-
The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life
-
PMID:7143428
-
Stark PL, Lee A. The microbial ecology of the large bowel of breast-fed and formula-fed infants during the first year of life. J Med Microbiol 1982; 15:189-203. PMID:7143428; http://dx.doi.org/10.1099/00222615-15-2-189.
-
(1982)
J Med Microbiol
, vol.15
, pp. 189-203
-
-
Stark, P.L.1
Lee, A.2
-
28
-
-
71549146864
-
Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces
-
PMID:19930542
-
Mulder IE, Schmidt B, Stokes CR, Lewis M, Bailey M, Aminov RI, et al. Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biol 2009; 7:79. PMID:19930542; http://dx.doi.org/10.1186/1741-7007-7-79.
-
(2009)
BMC Biol
, vol.7
, pp. 79
-
-
Mulder, I.E.1
Schmidt, B.2
Stokes, C.R.3
Lewis, M.4
Bailey, M.5
Aminov, R.I.6
-
29
-
-
35548941189
-
Epigenetic epidemiology of the developmental origins hypothesis
-
PMID:17465856
-
Waterland RA, Michels KB. Epigenetic epidemiology of the developmental origins hypothesis. Annu Rev Nutr 2007; 27:363-88. PMID:17465856; http://dx.doi.org/10.1146/annurev.nutr.27.061406.093705.
-
(2007)
Annu Rev Nutr
, vol.27
, pp. 363-388
-
-
Waterland, R.A.1
Michels, K.B.2
-
30
-
-
77950357572
-
Fetal programming: Link between early nutrition, DNA methylation and complex diseases
-
PMID:20137054
-
Chmurzynska A. Fetal programming: link between early nutrition, DNA methylation and complex diseases. Nutr Rev 2010; 68:87-98. PMID:20137054; http://dx.doi.org/10.1111/j.1753-4887.2009.00265.x.
-
(2010)
Nutr Rev
, vol.68
, pp. 87-98
-
-
Chmurzynska, A.1
-
31
-
-
34247549297
-
Metastable epialleles, imprinting, and the fetal origins of adult diseases
-
PMID:17413847
-
Dolinoy DC, Das R, Weidman JR, Jirtle RL. Metastable epialleles, imprinting, and the fetal origins of adult diseases. Pediatr Res 2007; 61:30-7. PMID:17413847; http://dx.doi.org/10.1203/pdr.0b013e31804575f7.
-
(2007)
Pediatr Res
, vol.61
, pp. 30-37
-
-
Dolinoy, D.C.1
Das, R.2
Weidman, J.R.3
Jirtle, R.L.4
-
32
-
-
78650688321
-
Season of conception in rural gambia affects DNA methylation at putative human metastable epialleles
-
PMID:21203497
-
Waterland RA, Kellermayer R, Laritsky E, Rayco-Solon P, Harris RA, Travisano M, et al. Season of conception in rural gambia affects DNA methylation at putative human metastable epialleles. PLoS Genet 2010; 6:1001252. PMID:21203497; http://dx.doi.org/10.1371/journal.pgen.1001252.
-
(2010)
PLoS Genet
, vol.6
, pp. 1001252
-
-
Waterland, R.A.1
Kellermayer, R.2
Laritsky, E.3
Rayco-Solon, P.4
Harris, R.A.5
Travisano, M.6
-
33
-
-
79955664245
-
Colonic mucosal DNA methylation, immune response and microbiome patterns in Toll-like receptor 2-knockout mice
-
PMID:21228220
-
Kellermayer R, Dowd SE, Harris RA, Balasa A, Schaible TD, Wolcott RD, et al. Colonic mucosal DNA methylation, immune response and microbiome patterns in Toll-like receptor 2-knockout mice. FASEB J 2011; 25:1449-60. PMID:21228220; http://dx.doi.org/10.1096/fj.10-172205.
-
(2011)
FASEB J
, vol.25
, pp. 1449-1460
-
-
Kellermayer, R.1
Dowd, S.E.2
Harris, R.A.3
Balasa, A.4
Schaible, T.D.5
Wolcott, R.D.6
-
34
-
-
79955973979
-
Klebsiella pneumoniae increases the risk of inflammation and colitis in a murine model of intestinal bowel disease
-
PMID:21410316
-
Lee IA, Kim DH. Klebsiella pneumoniae increases the risk of inflammation and colitis in a murine model of intestinal bowel disease. Scand J Gastroenterol 2011; 46:684-93. PMID:21410316; http://dx.doi.org/10.3109/00365521.2011.560678.
-
(2011)
Scand J Gastroenterol
, vol.46
, pp. 684-693
-
-
Lee, I.A.1
Kim, D.H.2
-
35
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
PMID:20679230
-
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, et al. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci USA 2010; 107:14691-6. PMID:20679230; http://dx.doi.org/10.1073/pnas.1005963107.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14691-14696
-
-
de Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
-
36
-
-
77953218649
-
Microflora in colorectal cancer: A friend to fear
-
PMID:20526315
-
Fukata M, Abreu MT. Microflora in colorectal cancer: a friend to fear. Nat Med 2010; 16:639-41. PMID:20526315; http://dx.doi.org/10.1038/nm0610-639.
-
(2010)
Nat Med
, vol.16
, pp. 639-641
-
-
Fukata, M.1
Abreu, M.T.2
-
37
-
-
80054851581
-
Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome
-
PMID:21741921
-
Saulnier DM, Riehle K, Mistretta TA, Diaz MA, Mandal D, Raza S, et al. Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology 2011; 141:1782-91. PMID:21741921; http://dx.doi.org/10.1053/j.gastro.2011.06.072.
-
(2011)
Gastroenterology
, vol.141
, pp. 1782-1791
-
-
Saulnier, D.M.1
Riehle, K.2
Mistretta, T.A.3
Diaz, M.A.4
Mandal, D.5
Raza, S.6
-
38
-
-
79955789416
-
The role of microbes in developmental immunologic programming
-
PMID:21364495
-
Kaplan JL, Shi HN, Walker WA. The role of microbes in developmental immunologic programming. Pediatr Res 2011; 69:465-72. PMID:21364495; http://dx.doi.org/10.1203/PDR.0b013e318217638a.
-
(2011)
Pediatr Res
, vol.69
, pp. 465-472
-
-
Kaplan, J.L.1
Shi, H.N.2
Walker, W.A.3
|