-
1
-
-
0035876111
-
A crucial component of the endoderm formation pathway, CASANOVA, is encoded by a novel sox-related gene
-
pmid: 11410529
-
T. Dickmeis et al., A crucial component of the endoderm formation pathway, CASANOVA, is encoded by a novel sox-related gene. Genes Dev. 15, 1487–1492 (2001). doi: 10.1101/ gad.196901; pmid: 11410529
-
(2001)
Genes Dev
, vol.15
, pp. 1487-1492
-
-
Dickmeis, T.1
-
2
-
-
0035875826
-
Casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish
-
pmid: 11410530
-
Y. Kikuchi et al., casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish. Genes Dev. 15, 1493–1505 (2001). doi: 10.1101/ gad.892301; pmid: 11410530
-
(2001)
Genes Dev
, vol.15
, pp. 1493-1505
-
-
Kikuchi, Y.1
-
3
-
-
0029585234
-
Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants
-
pmid: 8575325
-
M. E. Halpern et al., Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants. Development 121, 4257–4264 (1995). pmid: 8575325
-
(1995)
Development
, vol.121
, pp. 4257-4264
-
-
Halpern, M.E.1
-
4
-
-
0036238475
-
Constructing the hindbrain: Insights from the zebrafish
-
pmid: 11984869
-
C. B. Moens, V. E. Prince, Constructing the hindbrain: Insights from the zebrafish. Dev. Dyn. 224, 1–17 (2002). doi: 10.1002/ dvdy.10086; pmid: 11984869
-
(2002)
Dev. Dyn.
, vol.224
, pp. 1-17
-
-
Moens, C.B.1
Prince, V.E.2
-
5
-
-
84866977110
-
Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain
-
pmid: 23010996
-
L. Zhang et al., Noise drives sharpening of gene expression boundaries in the zebrafish hindbrain. Mol. Syst. Biol. 8, 613 (2012). doi: 10.1038/msb.2012.45; pmid: 23010996
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 613
-
-
Zhang, L.1
-
6
-
-
84929684999
-
Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
-
pmid: 26000488
-
E. Z. Macosko et al., Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161, 1202–1214 (2015). doi: 10.1016/j.cell.2015.05.002; pmid: 26000488
-
(2015)
Cell
, vol.161
, pp. 1202-1214
-
-
Macosko, E.Z.1
-
8
-
-
0026257928
-
Graph drawing by force-directed placement
-
T. M. J. Fruchterman, E. M. Reingold, Graph drawing by force-directed placement. Softw. Pract. Exper. 21, 1129–1164 (1991). doi: 10.1002/spe.4380211102
-
(1991)
Softw. Pract. Exper.
, vol.21
, pp. 1129-1164
-
-
Fruchterman, T.M.J.1
Reingold, E.M.2
-
9
-
-
28944448921
-
Molecular genetics of axis formation in zebrafish
-
pmid: 16285872
-
A. F. Schier, W. S. Talbot, Molecular genetics of axis formation in zebrafish. Annu. Rev. Genet. 39, 561–613 (2005). doi: 10.1146/annurev.genet.37.110801.143752; pmid: 16285872
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 561-613
-
-
Schier, A.F.1
Talbot, W.S.2
-
10
-
-
0025270337
-
Origin and organization of the zebrafish fate map
-
pmid: 2387237
-
C. B. Kimmel, R. M. Warga, T. F. Schilling, Origin and organization of the zebrafish fate map. Development 108, 581–594 (1990). pmid: 2387237
-
(1990)
Development
, vol.108
, pp. 581-594
-
-
Kimmel, C.B.1
Warga, R.M.2
Schilling, T.F.3
-
11
-
-
0029147655
-
Fate maps of the zebrafish embryo
-
pmid: 7580134
-
K. Woo, J. Shih, S. E. Fraser, Fate maps of the zebrafish embryo. Curr. Opin. Genet. Dev. 5, 439–443 (1995). doi: 10.1016/0959-437X(95)90046-J; pmid: 7580134
-
(1995)
Curr. Opin. Genet. Dev.
, vol.5
, pp. 439-443
-
-
Woo, K.1
Shih, J.2
Fraser, S.E.3
-
12
-
-
0028789927
-
A homeobox gene essential for zebrafish notochord development
-
pmid: 7477317
-
W. S. Talbot et al., A homeobox gene essential for zebrafish notochord development. Nature 378, 150–157 (1995). doi: 10.1038/378150a0; pmid: 7477317
-
(1995)
Nature
, vol.378
, pp. 150-157
-
-
Talbot, W.S.1
-
13
-
-
1642529511
-
Metagenes and molecular pattern discovery using matrix factorization
-
pmid: 15016911
-
J.-P. Brunet, P. Tamayo, T. R. Golub, J. P. Mesirov, Metagenes and molecular pattern discovery using matrix factorization. Proc. Natl. Acad. Sci. U.S.A. 101, 4164–4169 (2004). doi: 10.1073/pnas.0308531101; pmid: 15016911
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 4164-4169
-
-
Brunet, J.-P.1
Tamayo, P.2
Golub, T.R.3
Mesirov, J.P.4
-
14
-
-
84929151009
-
Spatial reconstruction of single-cell gene expression data
-
pmid: 25867923
-
R. Satija, J. A. Farrell, D. Gennert, A. F. Schier, A. Regev, Spatial reconstruction of single-cell gene expression data. Nat. Biotechnol. 33, 495–502 (2015). doi: 10.1038/nbt.3192; pmid: 25867923
-
(2015)
Nat. Biotechnol.
, vol.33
, pp. 495-502
-
-
Satija, R.1
Farrell, J.A.2
Gennert, D.3
Schier, A.F.4
Regev, A.5
-
15
-
-
55749116150
-
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
-
pmid: 18953355
-
G. Chechik et al., Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nat. Biotechnol. 26, 1251–1259 (2008). doi: 10.1038/nbt.1499; pmid: 18953355
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1251-1259
-
-
Chechik, G.1
-
16
-
-
0028170203
-
Goosecoid expression in neurectoderm and mesendoderm is disrupted in zebrafish cyclops gastrulas
-
pmid: 8045345
-
C. Thisse, B. Thisse, M. E. Halpern, J. H. Postlethwait, Goosecoid expression in neurectoderm and mesendoderm is disrupted in zebrafish cyclops gastrulas. Dev. Biol. 164, 420–429 (1994). doi: 10.1006/dbio.1994.1212; pmid: 8045345
-
(1994)
Dev. Biol.
, vol.164
, pp. 420-429
-
-
Thisse, C.1
Thisse, B.2
Halpern, M.E.3
Postlethwait, J.H.4
-
17
-
-
30544445875
-
FoxA3 and goosecoid promote anterior neural fate through inhibition of Wnt8a activity before the onset of gastrulation
-
pmid: 16364286
-
I. Seiliez, B. Thisse, C. Thisse, FoxA3 and goosecoid promote anterior neural fate through inhibition of Wnt8a activity before the onset of gastrulation. Dev. Biol. 290, 152–163 (2006). doi: 10.1016/j.ydbio.2005.11.021; pmid: 16364286
-
(2006)
Dev. Biol.
, vol.290
, pp. 152-163
-
-
Seiliez, I.1
Thisse, B.2
Thisse, C.3
-
18
-
-
34548529312
-
A global role for zebrafish klf4 in embryonic erythropoiesis
-
pmid: 17709232
-
M. R. Gardiner, M. M. Gongora, S. M. Grimmond, A. C. Perkins, A global role for zebrafish klf4 in embryonic erythropoiesis. Mech. Dev. 124, 762–774 (2007). doi: 10.1016/j.mod.2007. 06.005; pmid: 17709232
-
(2007)
Mech. Dev.
, vol.124
, pp. 762-774
-
-
Gardiner, M.R.1
Gongora, M.M.2
Grimmond, S.M.3
Perkins, A.C.4
-
19
-
-
42349090352
-
Regulation and function of foxe3 during early zebrafish development
-
pmid: 18327772
-
E. C. Swindell et al., Regulation and function of foxe3 during early zebrafish development. Genesis 46, 177–183 (2008). doi: 10.1002/dvg.20380; pmid: 18327772
-
(2008)
Genesis
, vol.46
, pp. 177-183
-
-
Swindell, E.C.1
-
20
-
-
0033515638
-
The EGF-CFC protein one-eyed pinhead is essential for nodal signaling
-
pmid: 10199408
-
K. Gritsman et al., The EGF-CFC protein one-eyed pinhead is essential for nodal signaling. Cell 97, 121–132 (1999). doi: 10.1016/S0092-8674(00)80720-5; pmid: 10199408
-
(1999)
Cell
, vol.97
, pp. 121-132
-
-
Gritsman, K.1
-
21
-
-
0035928741
-
Single-cell internalization during zebrafish gastrulation
-
pmid: 11525740
-
A. Carmany-Rampey, A. F. Schier, Single-cell internalization during zebrafish gastrulation. Curr. Biol. 11, 1261–1265 (2001). doi: 10.1016/S0960-9822(01)00353-0; pmid: 11525740
-
(2001)
Curr. Biol.
, vol.11
, pp. 1261-1265
-
-
Carmany-Rampey, A.1
Schier, A.F.2
-
22
-
-
84887101406
-
Smart-seq2 for sensitive full-length transcriptome profiling in single cells
-
pmid: 24056875
-
S. Picelli et al., Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods 10, 1096–1098 (2013). doi: 10.1038/nmeth.2639; pmid: 24056875
-
(2013)
Nat. Methods
, vol.10
, pp. 1096-1098
-
-
Picelli, S.1
-
23
-
-
0034030077
-
Nodal signaling patterns the organizer
-
pmid: 10662632
-
K. Gritsman, W. S. Talbot, A. F. Schier, Nodal signaling patterns the organizer. Development 127, 921–932 (2000). pmid: 10662632
-
(2000)
Development
, vol.127
, pp. 921-932
-
-
Gritsman, K.1
Talbot, W.S.2
Schier, A.F.3
-
24
-
-
84974576984
-
Whole-organism lineage tracing by combinatorial and cumulative genome editing
-
pmid: 27229144
-
A. McKenna et al., Whole-organism lineage tracing by combinatorial and cumulative genome editing. Science 353, aaf7907 (2016). doi: 10.1126/science.aaf7907; pmid: 27229144
-
(2016)
Science
, vol.353
, pp. aaf7907
-
-
McKenna, A.1
-
25
-
-
85053783956
-
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
-
pmid: 29608178
-
B. Raj et al., Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. Nat. Biotechnol. 40, 181 (2018). pmid: 29608178
-
(2018)
Nat. Biotechnol.
, vol.40
, pp. 181
-
-
Raj, B.1
-
26
-
-
85044334985
-
The cis-regulatory dynamics of embryonic development at single-cell resolution
-
pmid: 29539636
-
D. A. Cusanovich et al., The cis-regulatory dynamics of embryonic development at single-cell resolution. Nature 555, 538–542 (2018). doi: 10.1038/nature25981; pmid: 29539636
-
(2018)
Nature
, vol.555
, pp. 538-542
-
-
Cusanovich, D.A.1
-
27
-
-
0023663888
-
Expression of a single transfected cDNA converts fibroblasts to myoblasts
-
pmid: 3690668
-
R. L. Davis, H. Weintraub, A. B. Lassar, Expression of a single transfected cDNA converts fibroblasts to myoblasts. Cell 51, 987–1000 (1987). doi: 10.1016/0092-8674(87)90585-X; pmid: 3690668
-
(1987)
Cell
, vol.51
, pp. 987-1000
-
-
Davis, R.L.1
Weintraub, H.2
Lassar, A.B.3
-
28
-
-
0024294014
-
MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts
-
pmid: 3175662
-
S. J. Tapscott et al., MyoD1: A nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts. Science 242, 405–411 (1988). doi: 10.1126/ science.3175662; pmid: 3175662
-
(1988)
Science
, vol.242
, pp. 405-411
-
-
Tapscott, S.J.1
-
29
-
-
33747195353
-
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
-
pmid: 16904174
-
K. Takahashi, S. Yamanaka, Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 126, 663–676 (2006). doi: 10.1016/ j.cell.2006.07.024; pmid: 16904174
-
(2006)
Cell
, vol.126
, pp. 663-676
-
-
Takahashi, K.1
Yamanaka, S.2
-
30
-
-
84994860357
-
Revealing the vectors of cellular identity with single-cell genomics
-
pmid: 27824854
-
A. Wagner, A. Regev, N. Yosef, Revealing the vectors of cellular identity with single-cell genomics. Nat. Biotechnol. 34, 1145–1160 (2016). doi: 10.1038/nbt.3711; pmid: 27824854
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 1145-1160
-
-
Wagner, A.1
Regev, A.2
Yosef, N.3
-
31
-
-
84991571425
-
Computational methods for trajectory inference from single-cell transcriptomics
-
pmid: 27682842
-
R. Cannoodt, W. Saelens, Y. Saeys, Computational methods for trajectory inference from single-cell transcriptomics. Eur. J. Immunol. 46, 2496–2506 (2016). doi: 10.1002/ eji.201646347; pmid: 27682842
-
(2016)
Eur. J. Immunol.
, vol.46
, pp. 2496-2506
-
-
Cannoodt, R.1
Saelens, W.2
Saeys, Y.3
-
32
-
-
84899574465
-
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
-
pmid: 24766814
-
S. C. Bendall et al., Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. Cell 157, 714–725 (2014). doi: 10.1016/ j.cell.2014.04.005; pmid: 24766814
-
(2014)
Cell
, vol.157
, pp. 714-725
-
-
Bendall, S.C.1
-
33
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
pmid: 24658644
-
C. Trapnell et al., The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol. 32, 381–386 (2014). doi: 10.1038/ nbt.2859; pmid: 24658644
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
-
34
-
-
85015695392
-
Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states
-
pmid: 28296635
-
S. Jang et al., Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. eLife 6, e20487 (2017). doi: 10.7554/eLife.20487; pmid: 28296635
-
(2017)
eLife
, vol.6
, pp. e20487
-
-
Jang, S.1
-
35
-
-
84941753288
-
Diffusion maps for high-dimensional single-cell analysis of differentiation data
-
pmid: 26002886
-
L. Haghverdi, F. Buettner, F. J. Theis, Diffusion maps for high-dimensional single-cell analysis of differentiation data. Bioinformatics 31, 2989–2998 (2015). doi: 10.1093/ bioinformatics/btv325; pmid: 26002886
-
(2015)
Bioinformatics
, vol.31
, pp. 2989-2998
-
-
Haghverdi, L.1
Buettner, F.2
Theis, F.J.3
-
36
-
-
84984643819
-
Diffusion pseudotime robustly reconstructs lineage branching
-
pmid: 27571553
-
L. Haghverdi, M. Büttner, F. A. Wolf, F. Buettner, F. J. Theis, Diffusion pseudotime robustly reconstructs lineage branching. Nat. Methods 13, 845–848 (2016). doi: 10.1038/nmeth.3971; pmid: 27571553
-
(2016)
Nat. Methods
, vol.13
, pp. 845-848
-
-
Haghverdi, L.1
Büttner, M.2
Wolf, F.A.3
Buettner, F.4
Theis, F.J.5
-
37
-
-
84974587998
-
Wishbone identifies bifurcating developmental trajectories from single-cell data
-
pmid: 27136076
-
M. Setty et al., Wishbone identifies bifurcating developmental trajectories from single-cell data. Nat. Biotechnol. 34, 637–645 (2016). doi: 10.1038/nbt.3569; pmid: 27136076
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 637-645
-
-
Setty, M.1
|