메뉴 건너뛰기




Volumn 56, Issue 4, 2018, Pages 231-237

Hymenobacter terrigena sp. nov., isolated from soil

Author keywords

Bacteroidetes; Hymenobacter; polyphasic taxonomy

Indexed keywords

BACTERIAL DNA; FARNOQUINONE; FATTY ACID; RNA 16S; VITAMIN MK 7;

EID: 85044840234     PISSN: 12258873     EISSN: 19763794     Source Type: Journal    
DOI: 10.1007/s12275-018-8029-z     Document Type: Article
Times cited : (4)

References (42)
  • 1
    • 0035989637 scopus 로고    scopus 로고
    • Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family
    • COI: 1:CAS:528:DC%2BD38XkslCqs7c%3D, PID: 12054224
    • Bernardet, J.F., Nakagawa, Y., and Holmes, B. 2002. Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int. J. Syst. Evol. Microbiol. 52, 1049–1070.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1049-1070
    • Bernardet, J.F.1    Nakagawa, Y.2    Holmes, B.3
  • 2
    • 50949127963 scopus 로고    scopus 로고
    • Sampling and staining for light microscopy
    • Reddy, C.A., Beveridge, T.J., Breznak, J.A., Marzluf, G., Schmidt, T.M., Snyder, L.R., American Society for Microbiology, Washington, D.C., USA
    • Beveridge, T.J., Lawrence, J.R., and Murray, R.G.E. 2007. Sampling and staining for light microscopy, pp. 19–33. In Reddy, C.A., Beveridge, T.J., Breznak, J.A., Marzluf, G., Schmidt, T.M., and Snyder, L.R. (eds). Methods for General and Molecular Microbiology. American Society for Microbiology, Washington, D.C., USA.
    • (2007) Methods for General and Molecular Microbiology , pp. 19-33
    • Beveridge, T.J.1    Lawrence, J.R.2    Murray, R.G.E.3
  • 4
    • 33749002541 scopus 로고    scopus 로고
    • Proposal of Hymenobacter norwichensis sp. nov., classification of ‘Taxeobacter ocellatus’, ‘Taxeobacter gelupurpurascens’ and ‘Taxeobacter chitinovorans’ as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999
    • COI: 1:CAS:528:DC%2BD28XhtFekt7bN, PID: 16957101
    • Buczolits, S.E., Denner, B.M., Kämpfer, P., and Busse, H.J. 2006. Proposal of Hymenobacter norwichensis sp. nov., classification of ‘Taxeobacter ocellatus’, ‘Taxeobacter gelupurpurascens’ and ‘Taxeobacter chitinovorans’ as Hymenobacter ocellatus sp. nov., Hymenobacter gelipurpurascens sp. nov. and Hymenobacter chitinivorans sp. nov., respectively, and emended description of the genus Hymenobacter Hirsch et al. 1999. Int. J. Syst. Evol. Microbiol. 56, 2071–2078.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2071-2078
    • Buczolits, S.E.1    Denner, B.M.2    Kämpfer, P.3    Busse, H.J.4
  • 5
    • 0036193950 scopus 로고    scopus 로고
    • Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov
    • COI: 1:CAS:528:DC%2BD38XivV2rtbo%3D, PID: 11931156
    • Buczolits, S., Denner, E.B.M., Vybiral, D., Wieser, M., Kämpfer, P., and Buss, H.J. 2002. Classification of three airborne bacteria and proposal of Hymenobacter aerophilus sp. nov. Int. J. Syst. Evol. Microbiol. 52, 445–456.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 445-456
    • Buczolits, S.1    Denner, E.B.M.2    Vybiral, D.3    Wieser, M.4    Kämpfer, P.5    Buss, H.J.6
  • 7
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y., and Yabuuchi, E. 1989. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224–229.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 8
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • COI: 1:CAS:528:DyaL3MXls1Cisr8%3D, PID: 7288891
    • Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368–376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 9
    • 0000461280 scopus 로고
    • Confidence limit on phylogenies: an approach using the bootstrap
    • PID: 28561359
    • Felsenstein, J. 1985. Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39, 783–791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 10
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: minimum change for a specific tree topology
    • Fitch, W.M. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406–416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 11
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • COI: 1:CAS:528:DC%2BD3cXhtVyjs7Y%3D
    • Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95–98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 12
    • 0030435636 scopus 로고    scopus 로고
    • Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection
    • COI: 1:CAS:528:DyaK2sXht1SisrY%3D
    • Hiraishi, A., Ueda, Y., Ishihara, J., and Mori, T. 1996. Comparative lipoquinone analysis of influent sewage and activated sludge by high performance liquid chromatography and photodiode array detection. J. Gen. Appl. Microbiol. 42, 457–469.
    • (1996) J. Gen. Appl. Microbiol. , vol.42 , pp. 457-469
    • Hiraishi, A.1    Ueda, Y.2    Ishihara, J.3    Mori, T.4
  • 13
    • 0031719811 scopus 로고    scopus 로고
    • Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antarctic soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent
    • COI: 1:CAS:528:DyaK1cXmt1Chsr0%3D, PID: 9841127
    • Hirsch, P., Ludwig, W., Hethke, C., Sittig, M., Hoffmann, B., and Gallikowski, C.A. 1998. Hymenobacter roseosalivarius gen. nov., sp. nov. from continental Antarctic soils and sandstone: bacteria of the Cytophaga/Flavobacterium/Bacteroides line of phylogenetic descent. Syst. Appl. Microbiol. 21, 374–383.
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 374-383
    • Hirsch, P.1    Ludwig, W.2    Hethke, C.3    Sittig, M.4    Hoffmann, B.5    Gallikowski, C.A.6
  • 14
    • 84889604918 scopus 로고    scopus 로고
    • Hymenobacter koreensis sp. nov. and Hymenobacter saemangeumensis sp. nov., isolated from estuarine water
    • COI: 1:CAS:528:DC%2BC2cXksFWlsbk%3D
    • Kang, J.Y., Chun, J., Choi, A., Moon, S.H., Cho, J.C., and Jahng, K.Y. 2013. Hymenobacter koreensis sp. nov. and Hymenobacter saemangeumensis sp. nov., isolated from estuarine water. Evol. Microbiol. 63, 4568–4573.
    • (2013) Evol. Microbiol. , vol.63 , pp. 4568-4573
    • Kang, J.Y.1    Chun, J.2    Choi, A.3    Moon, S.H.4    Cho, J.C.5    Jahng, K.Y.6
  • 15
    • 47249108992 scopus 로고    scopus 로고
    • Hymenobacter soli sp. nov., isolated from grass soil
    • COI: 1:CAS:528:DC%2BD1cXmtlSitbo%3D, PID: 18398199
    • Kim, K.H., Im, W.T., and Lee, S.T. 2008. Hymenobacter soli sp. nov., isolated from grass soil. Int. J. Syst. Evol. Microbiol. 58, 941–945.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 941-945
    • Kim, K.H.1    Im, W.T.2    Lee, S.T.3
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • COI: 1:CAS:528:DyaL3MXmtFSktg%3D%3D, PID: 7463489
    • Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111–120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 77956800518 scopus 로고
    • Lipid and cell-wall analysis in bacterial systematics
    • COI: 1:CAS:528:DyaL1cXitFylt78%3D
    • Komagata, K. and Suzuki, K.I. 1987. Lipid and cell-wall analysis in bacterial systematics. Methods Microbiol. 19, 161–205.
    • (1987) Methods Microbiol. , vol.19 , pp. 161-205
    • Komagata, K.1    Suzuki, K.I.2
  • 18
    • 85022158148 scopus 로고    scopus 로고
    • MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets
    • COI: 1:CAS:528:DC%2BC28XhsF2ltrzN, PID: 27004904
    • Kumar, S., Stecher, G., and Tamura, K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33, 1870–1874.
    • (2016) Mol. Biol. Evol. , vol.33 , pp. 1870-1874
    • Kumar, S.1    Stecher, G.2    Tamura, K.3
  • 19
    • 84988354745 scopus 로고    scopus 로고
    • High quality draft genome sequence of the type strain of Pseudomonas lutea OK2T, a phosphate-solubilizing rhizospheric bacterium
    • PID: 27555890
    • Kwak, Y., Park, G.S., and Shin, J.H. 2016. High quality draft genome sequence of the type strain of Pseudomonas lutea OK2T, a phosphate-solubilizing rhizospheric bacterium. Stand. Genomic Sci. 11, 51.
    • (2016) Stand. Genomic Sci. , vol.11 , pp. 51
    • Kwak, Y.1    Park, G.S.2    Shin, J.H.3
  • 20
    • 84959122906 scopus 로고    scopus 로고
    • Hymenobacter rubidus sp. nov., bacterium isolated form a soil
    • COI: 1:CAS:528:DC%2BC28Xhtl2lsLY%3D
    • Lee, J.J., Joo, E.S., Kim, E.B., Jeon, S.H., Srinivasan, S., Jung, H.Y., and Kim, M.K. 2016. Hymenobacter rubidus sp. nov., bacterium isolated form a soil. J. Microbiol. 109, 457–466.
    • (2016) J. Microbiol. , vol.109 , pp. 457-466
    • Lee, J.J.1    Joo, E.S.2    Kim, E.B.3    Jeon, S.H.4    Srinivasan, S.5    Jung, H.Y.6    Kim, M.K.7
  • 22
    • 85020465446 scopus 로고    scopus 로고
    • Hymenobacter aquaticus sp. nov., a radiation-resistant bacterium isolated from a river
    • PID: 28086076
    • Lee, J.J., Park, S.J., Lee, Y.H., Lee, S.Y., Ten, L.N., and Jung, H.Y. 2017a. Hymenobacter aquaticus sp. nov., a radiation-resistant bacterium isolated from a river. Int. J. Syst. Evol. Microbiol. 67, 1206–1211.
    • (2017) Int. J. Syst. Evol. Microbiol. , vol.67 , pp. 1206-1211
    • Lee, J.J.1    Park, S.J.2    Lee, Y.H.3    Lee, S.Y.4    Ten, L.N.5    Jung, H.Y.6
  • 23
    • 79952410162 scopus 로고    scopus 로고
    • Stenotrophomonas daejeonensis sp. nov., isolated from sewage
    • COI: 1:CAS:528:DC%2BC3MXltFagtbk%3D, PID: 20400671
    • Lee, M., Woo, S.G., Chae, M., Shin, M.C., Jung, H.M., and Ten, L.N. 2011. Stenotrophomonas daejeonensis sp. nov., isolated from sewage. Int. J. Syst. Evol. Microbiol. 61, 598–604.
    • (2011) Int. J. Syst. Evol. Microbiol. , vol.61 , pp. 598-604
    • Lee, M.1    Woo, S.G.2    Chae, M.3    Shin, M.C.4    Jung, H.M.5    Ten, L.N.6
  • 25
    • 0000198211 scopus 로고
    • Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography
    • COI: 1:CAS:528:DyaL1MXltFWku7o%3D
    • Mesbah, M., Premachandran, U., and Whitman, W.B. 1989. Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Evol. Microbiol. 39, 159–167.
    • (1989) Int. J. Syst. Evol. Microbiol. , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 27
    • 84874833726 scopus 로고    scopus 로고
    • Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America
    • PID: 22987249
    • Reddy, G.S.N. and Garcia-Pichel, F. 2013. Description of Hymenobacter arizonensis sp. nov. from the southwestern arid lands of the United States of America. Antonie van Leeuwenhoek 103, 321–330.
    • (2013) Antonie van Leeuwenhoek , vol.103 , pp. 321-330
    • Reddy, G.S.N.1    Garcia-Pichel, F.2
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • COI: 1:STN:280:DyaL1c7ovFSjsA%3D%3D, PID: 3447015
    • Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406–425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0001859086 scopus 로고
    • Identification of bacteria by gas chromatography of cellular fatty acids
    • Sasser, M. 1990. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. MIDI Inc, Newark, DE, USA.
    • (1990) MIDI Technical Note 101
    • Sasser, M.1
  • 30
    • 0000612080 scopus 로고
    • Phenotypic characterization
    • Gerhardt, P., Murray, R.G.E., Wood, W.A., Krieg, N.R., American Society for Microbiology, Washington, USA
    • Smibert, R.M. and Krieg, N.R. 1994. Phenotypic characterization, pp. 607–654. In Gerhardt, P., Murray, R.G.E., Wood, W.A., and Krieg, N.R. (eds.), Methods for General and Molecular Bacteriology, American Society for Microbiology, Washington, USA.
    • (1994) Methods for General and Molecular Bacteriology , pp. 607-654
    • Smibert, R.M.1    Krieg, N.R.2
  • 32
    • 84939975980 scopus 로고    scopus 로고
    • Hymenobacter terrae sp. nov., a bacterium isolated from soil
    • COI: 1:CAS:528:DC%2BC2MXmtV2itA%3D%3D, PID: 25572492
    • Srinivasan, S., Lee, J.J., Park, K.R., Park, S.H., Jung, H.Y., and Kim, M.K. 2015a. Hymenobacter terrae sp. nov., a bacterium isolated from soil. Curr. Microbiol. 70, 643–650.
    • (2015) Curr. Microbiol. , vol.70 , pp. 643-650
    • Srinivasan, S.1    Lee, J.J.2    Park, K.R.3    Park, S.H.4    Jung, H.Y.5    Kim, M.K.6
  • 33
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • COI: 1:CAS:528:DyaK2MXitFCnsb4%3D
    • Stackebrandt, E. and Goebel, B.M. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846–849.
    • (1994) Int. J. Syst. Bacteriol. , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • COI: 1:CAS:528:DyaK1cXntFyntQ%3D%3D, PID: 9396791
    • Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., and Higgins, D.G. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876–4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 6044265186 scopus 로고
    • The use of semi-solid agar for the detection of bacterial motility
    • COI: 1:STN:280:DC%2BD283psVKqtg%3D%3D, PID: 16559914
    • Tittsler, R.P. and Sandholzer, L.A. 1936. The use of semi-solid agar for the detection of bacterial motility. J. Bacteriol. 31, 575–580.
    • (1936) J. Bacteriol. , vol.31 , pp. 575-580
    • Tittsler, R.P.1    Sandholzer, L.A.2
  • 39
    • 0026067797 scopus 로고
    • 16S ribosomal DNA amplification for phylogenetic study
    • COI: 1:CAS:528:DyaK3MXhsl2lurY%3D, PID: 1987160
    • Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol. 173, 697–703.
    • (1991) J. Bacteriol. , vol.173 , pp. 697-703
    • Weisburg, W.G.1    Barns, S.M.2    Pelletier, D.A.3    Lane, D.J.4
  • 40
    • 85044825076 scopus 로고    scopus 로고
    • In Ausubel, F.M. et al. (eds.), Current Protocols in Molecular Biology, Wiley InterScience, 2.4.1–2.4.5
    • Wilson, K. 1997. Preparation of genomic DNA from bacteria. In Ausubel, F.M. et al. (eds.), Current Protocols in Molecular Biology, Wiley InterScience, 2.4.1–2.4.5, Supplement 27.
    • (1997) Preparation of genomic DNA from bacteria , pp. 27
    • Wilson, K.1
  • 41
    • 85037715645 scopus 로고    scopus 로고
    • Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies
    • PID: 28005526
    • Yoon, S.H., Ha, S.M., Kwon, S., Lim, J., Kim, Y., Seo, H., and Chun, J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int. J. Syst. Evol. Microbiol. 67, 1613–1617.
    • (2017) Int. J. Syst. Evol. Microbiol. , vol.67 , pp. 1613-1617
    • Yoon, S.H.1    Ha, S.M.2    Kwon, S.3    Lim, J.4    Kim, Y.5    Seo, H.6    Chun, J.7
  • 42
    • 34547410934 scopus 로고    scopus 로고
    • Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from the ginseng cultivating soil
    • COI: 1:CAS:528:DC%2BD2sXosFSgurc%3D, PID: 18050908
    • Yoon, M.H., Ten, L.N., and Im, W.T. 2007. Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from the ginseng cultivating soil. J. Microbiol. Biotechnol. 17, 913–918.
    • (2007) J. Microbiol. Biotechnol. , vol.17 , pp. 913-918
    • Yoon, M.H.1    Ten, L.N.2    Im, W.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.