메뉴 건너뛰기




Volumn 17, Issue 6, 2007, Pages 913-918

Cohnella panacarvi sp. nov., a xylanolytic bacterium isolated from ginseng cultivating soil

Author keywords

Cohnella panacarvi sp. nov.; Ginseng soil; Polyphasic taxonomy

Indexed keywords

CYTOSINE; GENOMIC DNA; GUANINE; MENAQUINONE; RNA 16S;

EID: 34547410934     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (38)

References (29)
  • 1
    • 0025919484 scopus 로고
    • Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences
    • Ash, C., J. A. E. Farrow, S. Wallbanks, and M. D. Collins. 1991. Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett. Appl. Microbiol. 13: 202-206.
    • (1991) Lett. Appl. Microbiol , vol.13 , pp. 202-206
    • Ash, C.1    Farrow, J.A.E.2    Wallbanks, S.3    Collins, M.D.4
  • 2
    • 0027860384 scopus 로고
    • Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus
    • Ash, C., F. G. Priest, and M. D. Collins. 1993. Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus. Antonie van Leeuwenhoek 64: 253-260.
    • (1993) Antonie van Leeuwenhoek , vol.64 , pp. 253-260
    • Ash, C.1    Priest, F.G.2    Collins, M.D.3
  • 4
    • 0020407158 scopus 로고
    • Nonstaining (KOH) method for determination of Gram reactions of marine bacteria
    • Buck, J. D. 1982. Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl. Environ. Microbiol. 44: 992-993.
    • (1982) Appl. Environ. Microbiol , vol.44 , pp. 992-993
    • Buck, J.D.1
  • 6
    • 33646724485 scopus 로고    scopus 로고
    • Diversity of root-associated Paenibacillus spp. in winter crops from the southern part of Korea
    • Cheong, H., S.-Y. Park, C.-M. Ryu, J. F. Kim, S.-H. Park, and C. S. Park. 2005. Diversity of root-associated Paenibacillus spp. in winter crops from the southern part of Korea. J. Microbiol. Biotechnol. 15: 1286-1298.
    • (2005) J. Microbiol. Biotechnol , vol.15 , pp. 1286-1298
    • Cheong, H.1    Park, S.-Y.2    Ryu, C.-M.3    Kim, J.F.4    Park, S.-H.5    Park, C.S.6
  • 7
    • 34547447410 scopus 로고    scopus 로고
    • names with standing in nomenclature
    • Euzéby, J. P. 2006. List of bacterial names with standing in nomenclature. http://www.bacterio.cict.fr/.
    • (2006) List of bacterial
    • Euzéby, J.P.1
  • 8
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 9
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. M. 1972. Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool. 20: 406-416.
    • (1972) Syst. Zool , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 10
    • 34547466939 scopus 로고    scopus 로고
    • Hall, M. G. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98.
    • Hall, M. G. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98.
  • 11
    • 16844364169 scopus 로고    scopus 로고
    • Whole-cell fatty acid analysis in the systematics of Bacillus and related genera
    • R. Berkeley, M. Heyndrickx, N. Logan, and P. De Vos eds, Blackwell Science, Oxford
    • Kämpfer, P. 2002. Whole-cell fatty acid analysis in the systematics of Bacillus and related genera, pp. 271-299. In R. Berkeley, M. Heyndrickx, N. Logan, and P. De Vos (eds.), Applications and Systematics of Bacillus and Relatives. Blackwell Science, Oxford.
    • (2002) Applications and Systematics of Bacillus and Relatives , pp. 271-299
    • Kämpfer, P.1
  • 12
    • 33646190989 scopus 로고    scopus 로고
    • Cohnella thermotolerans gen. nov., sp. nov., and classification of 'Paenibacillus hongkongensis' as Cohnella hongkongensis sp. nov
    • Kämpfer, P., R. Rosselló-Mora, E. Falsen, H.-J. Busse, and B. J. Tindall. 2006. Cohnella thermotolerans gen. nov., sp. nov., and classification of 'Paenibacillus hongkongensis' as Cohnella hongkongensis sp. nov. Int. J. Syst. Evol. Microbiol. 56: 781-786.
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 781-786
    • Kämpfer, P.1    Rosselló-Mora, R.2    Falsen, E.3    Busse, H.-J.4    Tindall, B.J.5
  • 13
    • 0035070157 scopus 로고    scopus 로고
    • Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes
    • Keswani, J. and W. B. Whitman. 2001. Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes. Int. J. Syst. Evol. Microbiol. 51: 667-678.
    • (2001) Int. J. Syst. Evol. Microbiol , vol.51 , pp. 667-678
    • Keswani, J.1    Whitman, W.B.2
  • 14
    • 19344364985 scopus 로고    scopus 로고
    • Sphingopyxis granuli sp. nov., a β-glucosidase producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria
    • Kim, M. K., W.-T. Im, H. Ohta, M. Lee, and S.-T. Lee. 2005. Sphingopyxis granuli sp. nov., a β-glucosidase producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J. Microbiol. 43: 152-157.
    • (2005) J. Microbiol , vol.43 , pp. 152-157
    • Kim, M.K.1    Im, W.-T.2    Ohta, H.3    Lee, M.4    Lee, S.-T.5
  • 16
    • 0023089142 scopus 로고
    • Specific and sensitive plate assay for bacterial lipases
    • Kouker, G. and K.-E Jaeger. 1987. Specific and sensitive plate assay for bacterial lipases. Appl. Environ. Microbiol. 53: 211-213.
    • (1987) Appl. Environ. Microbiol , vol.53 , pp. 211-213
    • Kouker, G.1    Jaeger, K.-E.2
  • 17
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment briefings
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment briefings. Bioinformatics 5: 150-163.
    • (2004) Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 18
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography
    • Mesbah, M., U. Premachandran, and W. Whitman. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.
    • (1989) Int. J. Syst. Bacteriol , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.3
  • 19
    • 0003174184 scopus 로고
    • Preparation and analysis of DNA
    • F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl eds, Wiley, New York, U.S.A
    • Moore, D. D. 1995. Preparation and analysis of DNA, pp. 2-11. In F. W. Ausubel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (eds.), Current Protocols in Molecular Biology. Wiley, New York, U.S.A.
    • (1995) Current Protocols in Molecular Biology , pp. 2-11
    • Moore, D.D.1
  • 20
    • 27944453534 scopus 로고    scopus 로고
    • Nature of root-associated Paenibacillus polymyxa from field-grown winter barley in Korea
    • Ryu, C.-M., J. Kim, O. Choi, S.-Y. Park, S.-H. Park, and C.-S. Park. 2005. Nature of root-associated Paenibacillus polymyxa from field-grown winter barley in Korea. J. Microbiol. Biotechnol. 15: 984-991.
    • (2005) J. Microbiol. Biotechnol , vol.15 , pp. 984-991
    • Ryu, C.-M.1    Kim, J.2    Choi, O.3    Park, S.-Y.4    Park, S.-H.5    Park, C.-S.6
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. and M. Nei. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 24
    • 0028028182 scopus 로고
    • Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackebrandt, E. and B. M. Goebel. 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44: 846-849.
    • (1994) Int. J. Syst. Bacteriol , vol.44 , pp. 846-849
    • Stackebrandt, E.1    Goebel, B.M.2
  • 25
    • 1142273245 scopus 로고    scopus 로고
    • Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates
    • Ten, L. N., W.-T. Im, M.-K. Kim, M.-S. Kang, and S.-T. Lee. 2004. Development of a plate technique for screening of polysaccharide-degrading microorganisms by using a mixture of insoluble chromogenic substrates. J. Microbiol. Meth. 56: 375 -382.
    • (2004) J. Microbiol. Meth , vol.56 , pp. 375-382
    • Ten, L.N.1    Im, W.-T.2    Kim, M.-K.3    Kang, M.-S.4    Lee, S.-T.5
  • 26
    • 33751242749 scopus 로고    scopus 로고
    • Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea
    • Ten, L. N., S.-H. Baek, W.-T. Im, M. Lee, H. W. Oh, and S.-T. Lee. 2006. Paenibacillus panacisoli sp. nov., a xylanolytic bacterium isolated from soil in a ginseng field in South Korea. Int. J. Syst. Evol. Microbiol. 56: 2677-2681.
    • (2006) Int. J. Syst. Evol. Microbiol , vol.56 , pp. 2677-2681
    • Ten, L.N.1    Baek, S.-H.2    Im, W.-T.3    Lee, M.4    Oh, H.W.5    Lee, S.-T.6
  • 27
    • 0037312594 scopus 로고    scopus 로고
    • Pseudobacteraemia in a patient with neutropenic fever caused by a novel Paenibacillus species: Paenibacillus hongkongensis sp. nov
    • Teng, J. L. L., P. C. Y. Woo, K. W. Leung, S. K. Lau, M. K. Wong, and K. Y. Yuen. 2003. Pseudobacteraemia in a patient with neutropenic fever caused by a novel Paenibacillus species: Paenibacillus hongkongensis sp. nov. Mol. Pathol. 56: 29-35.
    • (2003) Mol. Pathol , vol.56 , pp. 29-35
    • Teng, J.L.L.1    Woo, P.C.Y.2    Leung, K.W.3    Lau, S.K.4    Wong, M.K.5    Yuen, K.Y.6
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. Higgins. 1997. The Clustal_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24: 4876-4882.
    • (1997) Nucleic Acids Res , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.5
  • 29
    • 0000770675 scopus 로고
    • International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
    • Wayne, L. G., D. J. Brenner, R. R. Colwell, et al. 1987. International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464.
    • (1987) Int. J. Syst. Bacteriol , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.