Genome shuffling and ribosome engineering of Streptomyces virginiae for improved virginiamycin production

Bioprocess and Biosystems Engineering

Volumn 41, Issue 5, 2018, Pages 729-738

  Tong, Qian Qian ^a,b   Zhou, Yue Hui ^a,b   Chen, Xiang Song ^a,b   Wu, Jin Yong ^a   Wei, Ping ^c   Yuan, Li Xia ^a   Yao, Jian Ming ^a  

^a INSTITUTE OF PLASMA PHYSICS   (China)

^b UNIVERSITY OF SCIENCE AND TECHNOLOGY OF CHINA   (China)

^c JIANGSU UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

Genome shuffling; High throughput; Ribosome engineering; Streptomyces virginiae; Streptomycin; Virginiamycin

Indexed keywords

ANTIBIOTICS; BACTERIA; GENES; MACROMOLECULES;

GENOME SHUFFLING; HIGH THROUGHPUT; RIBOSOME ENGINEERING; STREPTOMYCES VIRGINIAE; STREPTOMYCIN; VIRGINIAMYCIN;

THROUGHPUT;

STREPTOMYCIN; VIRGINIAMYCIN;

ANTIBIOTIC BIOSYNTHESIS; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM MUTANT; BIOENGINEERING; CONTROLLED STUDY; GENETIC SCREENING; HEAT; HIGH THROUGHPUT SCREENING; MICROWAVE RADIATION; NONHUMAN; PRIORITY JOURNAL; PROTOPLAST; RADIATION MUTAGENESIS; RIBOSOME; STREPTOMYCES; STREPTOMYCES VIRGINIAE; ULTRAVIOLET RADIATION; WILD TYPE; BIOSYNTHESIS; DNA SHUFFLING; GENETICS; METABOLISM; PROCEDURES;

DNA SHUFFLING; GENOME, BACTERIAL; STREPTOMYCES; VIRGINIAMYCIN;

EID: 85044556621     PISSN: 16157591     EISSN: 16157605     Source Type: Journal    
DOI: 10.1007/s00449-018-1906-3     Document Type: Article

References (39)

1. Mukhtar TA, Wright GD (2005) Streptogramins, oxazolidinones, and other inhibitors of bacterial protein synthesis. Chem Rev 105(2):529–542. https://doi.org/10.1021/cr030110z
2. Pulsawat N, Kitani S, Nihira T (2007) Characterization of biosynthetic gene cluster for the production of virginiamycin M, a streptogramin type A antibiotic, in Streptomyces virginiae. Gene 393(1):31–42
3. Cocito C (1979) Antibiotics of the virginiamycin family, inhibitors which contain synergistic components. Microbiol Rev 43(2):145–198
4. Dzhavakhiya V, Savushkin V, Ovchinnikov A, Glagolev V, Savelyeva V, Popova E, Novak N, Glagoleva E (2016) Scaling up a virginiamycin production by a high-yield Streptomyces virginiae VKM Ac-2738D strain using adsorbing resin addition and fed-batch fermentation under controlled conditions. 3 Biotech 6(2):240. https://doi.org/10.1007/s13205-016-0566-8
5. Yang YK, Shimizu H, Shioya S, Suga K, Nihira T, Yamada Y (1995) Optimum autoregulator addition strategy for maximum virginiamycin production in batch culture of Streptomyces virginiae. Biotechnol Bioeng 46(5):437–442
6. Shioya S, Morikawa M, Kajihara Y, Shimizu H (1999) Optimization of agitation and aeration conditions for maximum virginiamycin production. Appl Microbiol Biotechnol 51(2):164–169
7. Zvenigorodskii VI, Tyaglov BV, Voeikova TA (2001) Isolation of components of the peptide antibiotic virginiamycin and breeding of their producer, Streptomyces virginiae. Appl Biochem Microbiol 37(3):260–266
8. Gong J, Zheng H, Wu Z, Chen T, Zhao X (2009) Genome shuffling: progress and applications for phenotype improvement. Biotechnol Adv 27(6):996–1005
9. Zhang YX, Perry K, Vinci VA, Powell K, Stemmer WPC, Cardayré SBD (2002) Genome shuffling leads to rapid phenotypic improvement in bacteria. Nature 415(6872):644–646
10. Patnaik R, Louie S, Gavrilovic V, Perry K, Stemmer WPC, Ryan CM, Cardayré SD (2002) Genome shuffling of Lactobacillus for improved acid tolerance. Nat Biotechnol 20(7):707–712
11. Wang L, Chen X, Wu G, Zeng X, Ren X, Li S, Tang L, Mao Z (2016) Genome shuffling and gentamicin-resistance to improve ε-poly-l-lysine productivity of Streptomyces albulus W-156. Appl Biochem Biotechnol 180(3):1601–1617
12. Zheng P, Zhang K, Yan Q, Xu Y, Sun Z (2013) Enhanced succinic acid production by Actinobacillus succinogenes after genome shuffling. J Ind Microbiol Biotechnol 40(8):831–840
13. Lv XA, Jin YY, Li YD, Zhang H, Liang XL (2013) Genome shuffling of Streptomyces viridochromogenes for improved production of avilamycin. Appl Microbiol Biotechnol 97(2):641–648
14. Shima J, Hesketh A, Okamoto S, Kawamoto S, Ochi K (1996) Induction of actinorhodin production by rpsL mutations that confer streptomycin resistance in Streptomyces lividans and Streptomyces coelicolor A3(2). J Bacteriol 178(24):7276–7284
15. Ochi K, Okamoto S, Tozawa Y, Inaoka T, Hosaka T, Xu J, Kurosawa K (2004) Ribosome engineering and secondary metabolite production. Adv Appl Microbiol 56(1):155–184
16. Ochi K (2007) From microbial differentiation to ribosome engineering. Biosci Biotechnol Biochem 71(6):1373–1386
17. Wang Q, Zhang D, Li Y, Zhang F, Wang C, Liang X (2014) Genome shuffling and ribosome engineering of Streptomyces actuosus for high-yield nosiheptide production. Appl Biochem Biotechnol 173(6):1553–1563
18. Hosoya Y, Okamoto S, Muramatsu H, Ochi K (1998) Acquisition of certain streptomycin-resistant (str) mutations enhances antibiotic production in bacteria. Antimicrob Agents Chemother 42(8):2041–2047
19. Zhang J, Wang X, Diao J, He H, Zhang Y, Xiang W (2013) Streptomycin resistance-aided genome shuffling to improve doramectin productivity of Streptomyces avermitilis NEAU1069. J Ind Microbiol Biotechnol 40(8):877–889
20. Gossele F, Blain P, Marneffe T, Biot A (1991) High-performance liquid chromatographic determination of virginiamycin in Stafac, premixes and animal feeds. Analyst 116(12):1373–1380
21. Hajee CA, van Rhijn HJ, Lasaroms JJ, Keukens HJ, De JJ (2001) Development and validation of a method for the determination of sub-additive levels of virginiamycin in compound animal feeds by liquid chromatography. Analyst 126(8):1332–1338
22. Yang YK, Morikawa M, Shimizu H, Shioya S, Suga K, Nihira T, Yamada Y (1996) Maximum virginiamycin production by optimization of cultivation conditions in batch culture with autoregulator addition. Biotechnol Bioeng 49(4):437–444
23. Wang HK, Zhang J, Wang XJ, Wei Q, Dai YJ (2012) Genome shuffling improves production of the low-temperature alkalophilic lipase by Acinetobacter johnsonii. Biotechnol Lett 34(1):145–151
24. Du W, Huang D, Xia M, Wen J, Huang M (2014) Improved FK506 production by the precursors and product-tolerant mutant of Streptomyces tsukubaensis based on genome shuffling and dynamic fed-batch strategies. J Ind Microbiol Biot 41(7):1131–1143
25. Li W, Chen G, Gu L, Zeng W, Liang Z (2014) Genome shuffling of Aspergillus niger for improving transglycosylation activity. Appl Biochem Biotechnol 172(1):50–61
26. Zhou Y-P, Ren X-D, Wang L, Chen X-S, Mao Z-G, Tang L (2015) Enhancement of ε-poly-lysine production in ε-poly-lysine-tolerant Streptomyces sp. by genome shuffling. Bioproc Biosyst Eng 38(9):1705–1713
27. Xu ZN, Shen WH, Chen XY, Lin JP, Cen PL (2005) A high-throughput method for screening of rapamycin-producing strains of Streptomyces hygroscopicus by cultivation in 96-well microtiter plates. Biotechnol Lett 27(15):1135–1140
28. Hida H, Yamada T, Yamada Y (2007) Genome shuffling of Streptomyces sp. U121 for improved production of hydroxycitric acid. Appl Microbiol Biot 73(6):1387–1393
29. Zhao Y, Jiang C, Yu H, Fang F, Yang J (2014) Genome shuffling of Aspergillus glaucus HGZ-2 for enhanced cellulase production. Appl Biochem Biotechnol 174(4):1246–1259
30. Yu L, Pei X, Lei T, Wang Y, Feng Y (2008) Genome shuffling enhanced l-lactic acid production by improving glucose tolerance of Lactobacillus rhamnosus. J Biotechnol 134(2):154–159
31. Zhang M, Xiao Y, Zhu R, Zhang Q, Wang SL (2012) Enhanced thermotolerance and ethanol tolerance in Saccharomyces cerevisiae mutated by high-energy pulse electron beam and protoplast fusion. Bioproc Biosyst Eng 35(9):1455–1465
32. Luo JM, Li JS, Liu D, Liu F, Wang YT, Song XR, Wang M (2012) Genome Shuffling of Streptomyces gilvosporeus for Improving Natamycin Production. J Agric Food Chem 60(23):6026–6036
33. Parekh S, Vinci VA, Strobel RJ (2000) Improvement of microbial strains and fermentation processes. Appl Microbiol Biot 54(3):287–301
34. Beltrametti F, Rossi R, Selva E, Marinelli F (2006) Antibiotic production improvement in the rare actinomycete Planobispora rosea by selection of mutants resistant to the aminoglycosides streptomycin and gentamycin and to rifamycin. J Ind Microbiol Biot 33(4):283–288
35. Olano C, Lombó F, Méndez C, Salas JA (2008) Improving production of bioactive secondary metabolites in actinomycetes by metabolic engineering. Metab Eng 10(5):281–292
36. Tanaka Y, Komatsu M, Okamoto S, Tokuyama S, Kaji A, Ikeda H, Ochi K (2009) Antibiotic overproduction by rpsL and rsmG mutants of various actinomycetes. Appl Environ Microb 75(14):4919–4922
37. Baltz RH (2011) Strain improvement in actinomycetes in the postgenomic era. J Ind Microbiol Biot 38(6):657–666
38. Kozo O, Takeshi H (2013) New strategies for drug discovery: activation of silent or weakly expressed microbial gene clusters. Appl Microbiol Biot 97(1):87–98
39. Xu B, Jin Z, Jin Q, Li N, Cen P (2009) Improvement of pristinamycin production by genome shuffling and medium optimization for Streptomyces pristinaespiralis. Biotechnol Bioprocess Eng 14(2):175–179