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Volumn 115, Issue 7, 2018, Pages 1878-1883

Combinatorial pathway engineering using type I-E CRISPR interference

Author keywords

3 hydroxypropionic acid; combinatorial gene expression; CRISPR interference; malonyl coA; metabolic flux engineering

Indexed keywords

COBALT COMPOUNDS; ESCHERICHIA COLI; ITERATIVE METHODS; METABOLIC ENGINEERING; METABOLISM;

EID: 85044546572     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.26589     Document Type: Article
Times cited : (22)

References (23)
  • 1
    • 84882986957 scopus 로고    scopus 로고
    • Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system
    • Bikard, D., Jiang, W., Samai, P., Hochschild, A., Zhang, F., & Marraffini, L. A. (2013). Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system. Nucleic Acids Research, 41, 7429–7437.
    • (2013) Nucleic Acids Research , vol.41 , pp. 7429-7437
    • Bikard, D.1    Jiang, W.2    Samai, P.3    Hochschild, A.4    Zhang, F.5    Marraffini, L.A.6
  • 3
    • 84930971149 scopus 로고    scopus 로고
    • CRISPathBrick: Modular combinatorial assembly of type II-A CRISPR arrays for dCas9-Mediated multiplex transcriptional repression in E. coli
    • Cress, B. F., Toparlak, D., Guleria, S., Lebovich, M., Stieglitz, J. T., Englaender, J. A., … Koffas, M. A. G. (2015). CRISPathBrick: Modular combinatorial assembly of type II-A CRISPR arrays for dCas9-Mediated multiplex transcriptional repression in E. coli. ACS Synthetic Biology, 4, 987–1000.
    • (2015) ACS Synthetic Biology , vol.4 , pp. 987-1000
    • Cress, B.F.1    Toparlak, D.2    Guleria, S.3    Lebovich, M.4    Stieglitz, J.T.5    Englaender, J.A.6    Koffas, M.A.G.7
  • 4
    • 84952639685 scopus 로고    scopus 로고
    • Beyond editing: Repurposing CRISPR-Cas9 for precision genome regulation and interrogation
    • Dominguez, A. A., Lim, W. A., & Qi, L. S. (2015). Beyond editing: Repurposing CRISPR-Cas9 for precision genome regulation and interrogation. Nature Reviews. Molecular Cell Biology, 17, 5–15.
    • (2015) Nature Reviews. Molecular Cell Biology , vol.17 , pp. 5-15
    • Dominguez, A.A.1    Lim, W.A.2    Qi, L.S.3
  • 6
    • 31444433490 scopus 로고    scopus 로고
    • Synthetic promoter libraries-tuning of gene expression
    • Hammer, K., Mijakovic, I., & Jensen, P. R. (2006). Synthetic promoter libraries-tuning of gene expression. Trends in Biotechnology, 24, 53–55.
    • (2006) Trends in Biotechnology , vol.24 , pp. 53-55
    • Hammer, K.1    Mijakovic, I.2    Jensen, P.R.3
  • 7
    • 0141483081 scopus 로고    scopus 로고
    • Expression and characterization of the type III polyketide synthase 1,3,6,8-tetrahydroxynaphthalene synthase from Streptomyces coelicolor A3(2)
    • Izumikawa, M., Shipley, P. R., Hopke, J. N., O'Hare, T., Xiang, L., Noel, J. P., & Moore, B. S. (2003). Expression and characterization of the type III polyketide synthase 1,3,6,8-tetrahydroxynaphthalene synthase from Streptomyces coelicolor A3(2). Journal of Industrial Microbiology & Biotechnology, 30, 510–515.
    • (2003) Journal of Industrial Microbiology & Biotechnology , vol.30 , pp. 510-515
    • Izumikawa, M.1    Shipley, P.R.2    Hopke, J.N.3    O'Hare, T.4    Xiang, L.5    Noel, J.P.6    Moore, B.S.7
  • 8
    • 77955552919 scopus 로고    scopus 로고
    • Production of polyhydroxyalkanoates by Escherichia coli mutants with defected mixed acid fermentation pathways
    • Jian, J., Zhang, S.-Q., Shi, Z.-Y., Wang, W., Chen, G.-Q., & Wu, Q. (2010). Production of polyhydroxyalkanoates by Escherichia coli mutants with defected mixed acid fermentation pathways. Applied Microbiology and Biotechnology, 87, 2247–2256.
    • (2010) Applied Microbiology and Biotechnology , vol.87 , pp. 2247-2256
    • Jian, J.1    Zhang, S.-Q.2    Shi, Z.-Y.3    Wang, W.4    Chen, G.-Q.5    Wu, Q.6
  • 10
    • 84886993480 scopus 로고    scopus 로고
    • CRISPR interference (CRISPRi) for sequence-specific control of gene expression
    • Larson, M. H., Gilbert, L. A., Wang, X., Lim, W. A., Weissman, J. S., & Qi, L. S. (2013). CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nature Protocols, 8, 2180–2196.
    • (2013) Nature Protocols , vol.8 , pp. 2180-2196
    • Larson, M.H.1    Gilbert, L.A.2    Wang, X.3    Lim, W.A.4    Weissman, J.S.5    Qi, L.S.6
  • 11
    • 84957727651 scopus 로고    scopus 로고
    • Functional balance between enzymes in malonyl-CoA pathway for 3-hydroxypropionate biosynthesis
    • Liu, C., Ding, Y., Zhang, R., Liu, H., Xian, M., & Zhao, G. (2016). Functional balance between enzymes in malonyl-CoA pathway for 3-hydroxypropionate biosynthesis. Metabolic Engineering, 34, 104–111.
    • (2016) Metabolic Engineering , vol.34 , pp. 104-111
    • Liu, C.1    Ding, Y.2    Zhang, R.3    Liu, H.4    Xian, M.5    Zhao, G.6
  • 12
    • 84941084492 scopus 로고    scopus 로고
    • Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression
    • Luo, M. L., Mullis, A. S., Leenay, R. T., & Beisel, C. L. (2015). Repurposing endogenous type I CRISPR-Cas systems for programmable gene repression. Nucleic Acids Research, 43, 674–681.
    • (2015) Nucleic Acids Research , vol.43 , pp. 674-681
    • Luo, M.L.1    Mullis, A.S.2    Leenay, R.T.3    Beisel, C.L.4
  • 13
    • 84926645319 scopus 로고    scopus 로고
    • Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: Controllable P(3HB-co-4HB) biosynthesis
    • Lv, L., Ren, Y.-L., Chen, J.-C., Wu, Q., & Chen, G.-Q. (2015). Application of CRISPRi for prokaryotic metabolic engineering involving multiple genes, a case study: Controllable P(3HB-co-4HB) biosynthesis. Metabolic Engineering, 29, 160–168.
    • (2015) Metabolic Engineering , vol.29 , pp. 160-168
    • Lv, L.1    Ren, Y.-L.2    Chen, J.-C.3    Wu, Q.4    Chen, G.-Q.5
  • 14
    • 85047935524 scopus 로고    scopus 로고
    • Method for producing 3-hydroxypropionic acid and other products. (9,428,778). Cargill, Incorporated, Wayzata, MN
    • Lynch, M. D., Gill, R. T., & Lipscomb, T. E. (2016). Method for producing 3-hydroxypropionic acid and other products. (No. 9,428,778). Cargill, Incorporated, Wayzata, MN.
    • (2016)
    • Lynch, M.D.1    Gill, R.T.2    Lipscomb, T.E.3
  • 15
    • 84874687019 scopus 로고    scopus 로고
    • Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
    • Qi, L. S., Larson, M. H., Gilbert, L. A., Doudna, J. A., Weissman, J. S., Arkin, A. P., & Lim, W. A. (2013). Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell, 152, 1173–1183.
    • (2013) Cell , vol.152 , pp. 1173-1183
    • Qi, L.S.1    Larson, M.H.2    Gilbert, L.A.3    Doudna, J.A.4    Weissman, J.S.5    Arkin, A.P.6    Lim, W.A.7
  • 17
    • 84857449564 scopus 로고    scopus 로고
    • Production of 3-hydroxypropionic acid via malonyl-CoA pathway using recombinant Escherichia coli strains
    • Rathnasingh, C., Raj, S. M., Lee, Y., Catherine, C., Ashok, S., & Park, S. (2012). Production of 3-hydroxypropionic acid via malonyl-CoA pathway using recombinant Escherichia coli strains. Journal of Biotechnology, 157, 633–640.
    • (2012) Journal of Biotechnology , vol.157 , pp. 633-640
    • Rathnasingh, C.1    Raj, S.M.2    Lee, Y.3    Catherine, C.4    Ashok, S.5    Park, S.6
  • 18
    • 4644220226 scopus 로고    scopus 로고
    • Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: Assessment of correlated reaction subsets that comprise network states
    • Reed, J. L., & Palsson, B. (2004). Genome-scale in silico models of E. coli have multiple equivalent phenotypic states: Assessment of correlated reaction subsets that comprise network states. Genome Research, 14, 1797–1805.
    • (2004) Genome Research , vol.14 , pp. 1797-1805
    • Reed, J.L.1    Palsson, B.2
  • 19
    • 70349964350 scopus 로고    scopus 로고
    • Automated design of synthetic ribosome binding sites to control protein expression
    • Salis, H. M., Mirsky, E. A., & Voigt, C. A. (2009). Automated design of synthetic ribosome binding sites to control protein expression. Nature Biotechnology, 27, 946–950.
    • (2009) Nature Biotechnology , vol.27 , pp. 946-950
    • Salis, H.M.1    Mirsky, E.A.2    Voigt, C.A.3
  • 20
    • 80053173323 scopus 로고    scopus 로고
    • Directed PCR-free engineering of highly repetitive DNA sequences
    • Scior, A., Preissler, S., Koch, M., & Deuerling, E. (2011). Directed PCR-free engineering of highly repetitive DNA sequences. BMC Biotechnology, 11, 87.
    • (2011) BMC Biotechnology , vol.11 , pp. 87
    • Scior, A.1    Preissler, S.2    Koch, M.3    Deuerling, E.4
  • 21
    • 67349266694 scopus 로고    scopus 로고
    • Universal sample preparation method for proteome analysis
    • Wiśniewski, J. R., Zougman, A., Nagaraj, N., & Mann, M. (2009). Universal sample preparation method for proteome analysis. Nature Methods, 6, 359–362.
    • (2009) Nature Methods , vol.6 , pp. 359-362
    • Wiśniewski, J.R.1    Zougman, A.2    Nagaraj, N.3    Mann, M.4
  • 22
    • 84940840437 scopus 로고    scopus 로고
    • Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli
    • Wu, J., Du, G., Chen, J., & Zhou, J. (2015). Enhancing flavonoid production by systematically tuning the central metabolic pathways based on a CRISPR interference system in Escherichia coli. Scientific Reports, 5, 13477.
    • (2015) Scientific Reports , vol.5 , pp. 13477
    • Wu, J.1    Du, G.2    Chen, J.3    Zhou, J.4
  • 23
    • 63649137435 scopus 로고    scopus 로고
    • Improving cellular malonyl-CoA level in Escherichia coli via metabolic engineering
    • Zha, W., Rubin-Pitel, S. B., Shao, Z., & Zhao, H. (2009). Improving cellular malonyl-CoA level in Escherichia coli via metabolic engineering. Metabolic Engineering, 11, 192–198.
    • (2009) Metabolic Engineering , vol.11 , pp. 192-198
    • Zha, W.1    Rubin-Pitel, S.B.2    Shao, Z.3    Zhao, H.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.