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Volumn 8, Issue 1, 2018, Pages

Sample-Index Misassignment Impacts Tumour Exome Sequencing

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ALLELE; DNA SEQUENCE; EXOME; GENE FREQUENCY; GENE LIBRARY; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MEASUREMENT ACCURACY; NEOPLASM; PROCEDURES; SOFTWARE; WHOLE EXOME SEQUENCING;

EID: 85044542142     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-018-23563-4     Document Type: Article
Times cited : (12)

References (19)
  • 1
    • 84880452562 scopus 로고    scopus 로고
    • Genomics-driven oncology: Framework for an emerging paradigm
    • Garraway, L. A. Genomics-Driven Oncology: Framework for an Emerging Paradigm. J. Clin. Oncol. 31, 1806-1814 (2013).
    • (2013) J. Clin. Oncol. , vol.31 , pp. 1806-1814
    • Garraway, L.A.1
  • 2
    • 85011275698 scopus 로고    scopus 로고
    • CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer
    • Griffith, M. et al. CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer. Nat. Genet. 49, 170-174 (2017).
    • (2017) Nat. Genet. , vol.49 , pp. 170-174
    • Griffith, M.1
  • 3
    • 84874025843 scopus 로고    scopus 로고
    • Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
    • Cibulskis, K. et al. Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013).
    • (2013) Nat. Biotechnol. , vol.31 , pp. 213-219
    • Cibulskis, K.1
  • 4
    • 84964545042 scopus 로고    scopus 로고
    • Deciphering intratumor heterogeneity using cancer genome analysis
    • Ryu, D., Joung, J.-G., Kim, N. K. D., Kim, K.-T. &Park, W.-Y. Deciphering intratumor heterogeneity using cancer genome analysis. Hum. Genet. 135, 635-642 (2016).
    • (2016) Hum. Genet. , vol.135 , pp. 635-642
    • Ryu, D.1    Joung, J.-G.2    Kim, N.K.D.3    Kim, K.-T.4    Park, W.-Y.5
  • 5
    • 84971222718 scopus 로고    scopus 로고
    • Mechanisms and consequences of cancer genome instability: Lessons from genome sequencing studies
    • Lee, J.-K., Choi, Y.-L., Kwon, M. &Park, P. J. Mechanisms and Consequences of Cancer Genome Instability: Lessons from Genome Sequencing Studies. Annu. Rev. Pathol. 11, 283-312 (2016).
    • (2016) Annu. Rev. Pathol. , vol.11 , pp. 283-312
    • Lee, J.-K.1    Choi, Y.-L.2    Kwon, M.3    Park, P.J.4
  • 6
    • 84928105158 scopus 로고    scopus 로고
    • Memorial sloan kettering-integrated mutation profiling of actionable cancer targets (msk-impact): A hybridization capture-based next-generation sequencing clinical assay for solid tumor molecular oncology
    • Cheng, D. T. et al. Memorial Sloan Kettering-Integrated Mutation Profiling of Actionable Cancer Targets (MSK-IMPACT): A Hybridization Capture-Based Next-Generation Sequencing Clinical Assay for Solid Tumor Molecular Oncology. J. Mol. Diagn. 17, 251-264 (2015).
    • (2015) J. Mol. Diagn. , vol.17 , pp. 251-264
    • Cheng, D.T.1
  • 7
    • 85020279899 scopus 로고    scopus 로고
    • Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients
    • Zehir, A. et al. Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients. Nat. Med. 23, 703-713 (2017).
    • (2017) Nat. Med. , vol.23 , pp. 703-713
    • Zehir, A.1
  • 8
    • 84860782006 scopus 로고    scopus 로고
    • Absolute quantification of somatic DNA alterations in human cancer
    • Carter, S. L. et al. Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol. 30, 413-421 (2012).
    • (2012) Nat. Biotechnol. , vol.30 , pp. 413-421
    • Carter, S.L.1
  • 9
    • 84949564442 scopus 로고    scopus 로고
    • A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
    • Alioto, T. S. et al. A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing. Nat. Commun. 6, 10001 (2015).
    • (2015) Nat. Commun. , vol.6 , pp. 10001
    • Alioto, T.S.1
  • 10
    • 85013170830 scopus 로고    scopus 로고
    • DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification
    • Chen, L., Liu, P., Evans, T. C. Jr. &Ettwiller, L. M. DNA damage is a pervasive cause of sequencing errors, directly confounding variant identification. Science 355, 752-756 (2017).
    • (2017) Science , vol.355 , pp. 752-756
    • Chen, L.1    Liu, P.2    Evans, T.C.3    Ettwiller, L.M.4
  • 12
    • 84864153492 scopus 로고    scopus 로고
    • Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs
    • Saunders, C. T. et al. Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics 28, 1811-1817 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 1811-1817
    • Saunders, C.T.1
  • 13
    • 84995483126 scopus 로고    scopus 로고
    • Conpair: Concordance and contamination estimator for matched tumor-normal pairs
    • Bergmann, E. A., Chen, B.-J., Arora, K., Vacic, V. &Zody, M. C. Conpair: concordance and contamination estimator for matched tumor-normal pairs. Bioinformatics 32, 3196-3198 (2016).
    • (2016) Bioinformatics , vol.32 , pp. 3196-3198
    • Bergmann, E.A.1    Chen, B.-J.2    Arora, K.3    Vacic, V.4    Zody, M.C.5
  • 15
    • 84874102335 scopus 로고    scopus 로고
    • Evolution and impact of subclonal mutations in chronic lymphocytic leukemia
    • Landau, D. A. et al. Evolution and impact of subclonal mutations in chronic lymphocytic leukemia. Cell 152, 714-726 (2013).
    • (2013) Cell , vol.152 , pp. 714-726
    • Landau, D.A.1
  • 16
    • 84928254065 scopus 로고    scopus 로고
    • Clonal status of actionable driver events and the timing of mutational processes in cancer evolution
    • McGranahan, N. et al. Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. Sci. Transl. Med. 7, 283ra54 (2015).
    • (2015) Sci. Transl. Med. , vol.7 , pp. 283ra54
    • McGranahan, N.1
  • 17
    • 84944916590 scopus 로고    scopus 로고
    • The influence of subclonal resistance mutations on targeted cancer therapy
    • Schmitt, M. W., Loeb, L. A. &Salk, J. J. The influence of subclonal resistance mutations on targeted cancer therapy. Nat. Rev. Clin. Oncol. 13, 335-347 (2016).
    • (2016) Nat. Rev. Clin. Oncol. , vol.13 , pp. 335-347
    • Schmitt, M.W.1    Loeb, L.A.2    Salk, J.J.3
  • 18
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. &Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 19
    • 77956295988 scopus 로고    scopus 로고
    • The genome analysis toolkit: A mapreduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.