-
1
-
-
34249086851
-
miRNA profiling for diagnosis and prognosis of human cancer
-
PMID:17504025
-
Jay C, Nemunaitis J, Chen P, Fulgham P, Tong AW. miRNA profiling for diagnosis and prognosis of human cancer. DNA Cell Biol 2007; 26:293-300; PMID:17504025; http://dx.doi.org/10.1089/dna.2006.0554
-
(2007)
DNA Cell Biol
, vol.26
, pp. 293-300
-
-
Jay, C.1
Nemunaitis, J.2
Chen, P.3
Fulgham, P.4
Tong, A.W.5
-
2
-
-
80053946666
-
Circulating microRNAs: Association with disease and potential use as biomarkers
-
PMID:21145252
-
Reid G, Kirschner MB, van Zandwijk N. Circulating microRNAs: Association with disease and potential use as biomarkers. Crit Rev Oncol Hematol 2011; 80:193-208; PMID:21145252; http://dx.doi.org/10.1016/j.critrevonc.2010.11.004
-
(2011)
Crit Rev Oncol Hematol
, vol.80
, pp. 193-208
-
-
Reid, G.1
Kirschner, M.B.2
van Zandwijk, N.3
-
3
-
-
79957458567
-
Cell-free nucleic acids as biomarkers in cancer patients
-
PMID:21562580
-
Schwarzenbach H, Hoon DS, Pantel K. Cell-free nucleic acids as biomarkers in cancer patients. Nat Rev Cancer 2011; 11:426-37; PMID:21562580; http://dx.doi.org/10.1038/nrc3066
-
(2011)
Nat Rev Cancer
, vol.11
, pp. 426-437
-
-
Schwarzenbach, H.1
Hoon, D.S.2
Pantel, K.3
-
4
-
-
33645825183
-
Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer
-
PMID:16585533
-
Ein-Dor L, Zuk O, Domany E. Thousands of samples are needed to generate a robust gene list for predicting outcome in cancer. Proc Natl Acad Sci U S A 2006; 103:5923-8; PMID:16585533; http://dx.doi.org/10.1073/pnas.0601231103
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 5923-5928
-
-
Ein-Dor, L.1
Zuk, O.2
Domany, E.3
-
5
-
-
84857768920
-
Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment
-
PMID:22403633
-
Di Camillo B, Sanavia T, Martini M, Jurman G, Sambo F, Barla A, Squillario M, Furlanello C, Toffolo G, Cobelli C. Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment. PLoS One 2012; 7:e32200; PMID:22403633; http://dx.doi.org/10.1371/journal.pone.0032200
-
(2012)
PLoS One
, vol.7
-
-
Di Camillo, B.1
Sanavia, T.2
Martini, M.3
Jurman, G.4
Sambo, F.5
Barla, A.6
Squillario, M.7
Furlanello, C.8
Toffolo, G.9
Cobelli, C.10
-
6
-
-
27544451127
-
Simple decision rules for classifying human cancers from gene expression profiles
-
PMID:16105897
-
Tan AC, Naiman DQ, Xu L, Winslow RL, Geman D. Simple decision rules for classifying human cancers from gene expression profiles. Bioinformatics 2005; 21:3896-904; PMID:16105897; http://dx.doi.org/10.1093/bioinformatics/bti631
-
(2005)
Bioinformatics
, vol.21
, pp. 3896-3904
-
-
Tan, A.C.1
Naiman, D.Q.2
Xu, L.3
Winslow, R.L.4
Geman, D.5
-
7
-
-
33845876254
-
The Connectivity Map: a new tool for biomedical research
-
PMID:17186018
-
Lamb J. The Connectivity Map: a new tool for biomedical research. Nat Rev Cancer 2007; 7:54-60; PMID:17186018; http://dx.doi.org/10.1038/nrc2044
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 54-60
-
-
Lamb, J.1
-
8
-
-
77957044703
-
Discovery of drug mode of action and drug repositioning from transcriptional responses
-
PMID:20679242
-
Iorio F, Bosotti R, Scacheri E, Belcastro V, Mithbaokar P, Ferriero R, Murino L, Tagliaferri R, Brunetti-Pierri N, Isacchi A, et al. Discovery of drug mode of action and drug repositioning from transcriptional responses. Proc Natl Acad Sci U S A 2010; 107:14621-6; PMID:20679242; http://dx.doi.org/10.1073/pnas.1000138107
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14621-14626
-
-
Iorio, F.1
Bosotti, R.2
Scacheri, E.3
Belcastro, V.4
Mithbaokar, P.5
Ferriero, R.6
Murino, L.7
Tagliaferri, R.8
Brunetti-Pierri, N.9
Isacchi, A.10
-
9
-
-
84875718672
-
Transcriptional data: a new gateway to drug repositioning?
-
PMID:22897878
-
Iorio F, Rittman T, Ge H, Menden M, Saez-Rodriguez J. Transcriptional data: a new gateway to drug repositioning? Drug Discov Today 2013; 18:350-7; PMID:22897878; http://dx.doi.org/10.1016/j.drudis.2012.07.014
-
(2013)
Drug Discov Today
, vol.18
, pp. 350-357
-
-
Iorio, F.1
Rittman, T.2
Ge, H.3
Menden, M.4
Saez-Rodriguez, J.5
-
10
-
-
84885895107
-
Strengths and limitations of microarray-based phenotype prediction: Lessons learned from the IMPROVER Diagnostic Signature Challenge.
-
In press; PMID:23966112
-
Tarca AL, Lauria M, Unger M, Bilal E, Boue S, Dey KK, Hoeng J, Koeppl H, Martin F, Meyer P, et al.; IMPROVER DSC Collaborators. Strengths and limitations of microarray-based phenotype prediction: Lessons learned from the IMPROVER Diagnostic Signature Challenge. Bioinformatics 2013; In press; PMID:23966112; http://dx.doi.org/10.1093/bioinformatics/btt492
-
(2013)
Bioinformatics
-
-
Tarca, A.L.1
Lauria, M.2
Unger, M.3
Bilal, E.4
Boue, S.5
Dey, K.K.6
Hoeng, J.7
Koeppl, H.8
Martin, F.9
Meyer, P.10
-
11
-
-
84856065347
-
Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression
-
PMID:22276136
-
Allantaz F, Cheng DT, Bergauer T, Ravindran P, Rossier MF, Ebeling M, Badi L, Reis B, Bitter H, D'Asaro M, et al. Expression profiling of human immune cell subsets identifies miRNA-mRNA regulatory relationships correlated with cell type specific expression. PLoS One 2012; 7:e29979; PMID:22276136; http://dx.doi.org/10.1371/journal.pone.0029979
-
(2012)
PLoS One
, vol.7
-
-
Allantaz, F.1
Cheng, D.T.2
Bergauer, T.3
Ravindran, P.4
Rossier, M.F.5
Ebeling, M.6
Badi, L.7
Reis, B.8
Bitter, H.9
D'Asaro, M.10
-
12
-
-
84984671808
-
sbv IMPROVER Diagnostic Signature Challenge: Scoring strategies.
-
Norel R, Bilal E, Conrad-Chemineau N, Bonneau R, de la Fuente A, Jurisica I, Marbach D, Meyer P, Rice JJ, Tuller T, et al. sbv IMPROVER Diagnostic Signature Challenge: Scoring strategies. Systems Biomedicine 2013; e26326
-
(2013)
Systems Biomedicine
-
-
Norel, R.1
Bilal, E.2
Conrad-Chemineau, N.3
Bonneau, R.4
de la Fuente, A.5
Jurisica, I.6
Marbach, D.7
Meyer, P.8
Rice, J.J.9
Tuller, T.10
-
13
-
-
0038054341
-
PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
-
PMID:12808457
-
Mootha VK, Lindgren CM, Eriksson KF, Subramanian A, Sihag S, Lehar J, Puigserver P, Carlsson E, Ridderstråle M, Laurila E, et al. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes. Nat Genet 2003; 34:267-73; PMID:12808457; http://dx.doi.org/10.1038/ng1180
-
(2003)
Nat Genet
, vol.34
, pp. 267-273
-
-
Mootha, V.K.1
Lindgren, C.M.2
Eriksson, K.F.3
Subramanian, A.4
Sihag, S.5
Lehar, J.6
Puigserver, P.7
Carlsson, E.8
Ridderstråle, M.9
Laurila, E.10
-
14
-
-
79551587720
-
Cytoscape 2.8: new features for data integration and network visualization
-
PMID:21149340
-
Smoot ME, Ono K, Ruscheinski J, Wang PL, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011; 27:431-2; PMID:21149340; http://dx.doi.org/10.1093/bioinformatics/btq675
-
(2011)
Bioinformatics
, vol.27
, pp. 431-432
-
-
Smoot, M.E.1
Ono, K.2
Ruscheinski, J.3
Wang, P.L.4
Ideker, T.5
-
15
-
-
80655132169
-
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
-
PMID:22070249
-
Morris JH, Apeltsin L, Newman AM, Baumbach J, Wittkop T, Su G, Bader GD, Ferrin TE. clusterMaker: a multi-algorithm clustering plugin for Cytoscape. BMC Bioinformatics 2011; 12:436; PMID:22070249; http://dx.doi.org/10.1186/1471-2105-12-436
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 436
-
-
Morris, J.H.1
Apeltsin, L.2
Newman, A.M.3
Baumbach, J.4
Wittkop, T.5
Su, G.6
Bader, G.D.7
Ferrin, T.E.8
-
16
-
-
85043216626
-
-
Octave community, GNU Octave. http://www.gnu.org/software/octave/, 2012.
-
(2012)
-
-
-
17
-
-
84857790320
-
Gene-expression signatures: biomarkers toward diagnosing multiple sclerosis
-
PMID:21938015
-
Tossberg JT, Crooke PS, Henderson MA, Sriram S, Mrelashvili D, Chitnis S, Polman C, Vosslamber S, Verweij CL, Olsen NJ, et al. Gene-expression signatures: biomarkers toward diagnosing multiple sclerosis. Genes Immun 2012; 13:146-54; PMID:21938015; http://dx.doi.org/10.1038/gene.2011.66
-
(2012)
Genes Immun
, vol.13
, pp. 146-154
-
-
Tossberg, J.T.1
Crooke, P.S.2
Henderson, M.A.3
Sriram, S.4
Mrelashvili, D.5
Chitnis, S.6
Polman, C.7
Vosslamber, S.8
Verweij, C.L.9
Olsen, N.J.10
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