A Standard Nomenclature for Referencing and Authentication of Pluripotent Stem Cells

Stem Cell Reports

Volumn 10, Issue 1, 2018, Pages 1-6

  Kurtz, Andreas ^a   Seltmann, Stefanie ^a   Bairoch, Amos ^b   Bittner, Marie Sophie ^a   Bruce, Kevin ^c   Capes Davis, Amanda ^d   Clarke, Laura ^e   Crook, Jeremy M ^f,g   Daheron, Laurence ^h   Dewender, Johannes ^a   Faulconbridge, Adam ^e   Fujibuchi, Wataru ⁱ   Gutteridge, Alexander ^j   Hei, Derek J ^k   Kim, Yong Ou ^l   Kim, Jung Hyun ^l   Kokocinski, Anja Kolb ^m   Lekschas, Fritz ^a   Lomax, Geoffrey P ⁿ   Loring, Jeanne F ^o   Ludwig, Tenneille ^p   Mah, Nancy ^a   Matsui, Tohru ^q   Müller, Robert ^a   Parkinson, Helen ^e   Sheldon, Michael ^r   Smith, Kelly ^s   Stachelscheid, Harald ^a,t   Stacey, Glyn ^u,v   Streeter, Ian ^e   Veiga, Anna ^w   Xu, Ren He ^x   more..

^a CHARITÉ UNIVERSITÄTSMEDIZIN BERLIN   (Germany)

^b SWISS INSTITUTE OF BIOINFORMATICS   (Switzerland)

^c Roslin Cells Limited   (United Kingdom)

^d CHILDREN'S MEDICAL RESEARCH INSTITUTE   (Australia)

^e WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^f UNIVERSITY OF WOLLONGONG   (Australia)

^g UNIVERSITY OF MELBOURNE   (Australia)

^h HARVARD STEM CELL INSTITUTE   (United States)

ⁱ KYOTO UNIVERSITY   (Japan)

^j PFIZER GLOBAL RESEARCH AND DEVELOPMENT   (United Kingdom)

^k UNIVERSITY OF WISCONSIN MADISON   (United States)

^l Korea National Institute of Health   (South Korea)

^m WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

ⁿ California Institute of Regenerative Medicine Therapeutics Program   (United States)

^o SCRIPPS RESEARCH INSTITUTE   (United States)

^p WiCell Research Institute   (United States)

^q KEIO UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^r RUTGERS UNIVERSITY   (United States)

^s UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

^t BERLIN INSTITUTE OF HEALTH   (Germany)

^u NATIONAL INSTITUTE FOR BIOLOGICAL STANDARDS AND CONTROL   (United Kingdom)

^v International Stem Cell Banking Initiative   (United Kingdom)

^w CENTER OF REGENERATIVE MEDICINE IN BARCELONA   (Spain)

^x University of Macau   (Macao)

more..

Author keywords

cell data referencing; cell databases; cell line authentication; cell line nomenclature; human pluripotent stem cells; stem cell registry

Indexed keywords

ACCESS TO INFORMATION; DATA ANALYSIS; GENETIC ASSOCIATION; HUMAN; HUMAN CELL; INFORMATION RETRIEVAL; NOMENCLATURE; PLURIPOTENT STEM CELL; PLURIPOTENT STEM CELL LINE; PRIORITY JOURNAL; PUBLICATION; PUBLISHING; REGISTER; REVIEW; RISK; STANDARD; BIOBANK; FACTUAL DATABASE;

BIOLOGICAL SPECIMEN BANKS; DATABASES, FACTUAL; HUMANS; PLURIPOTENT STEM CELLS; REGISTRIES; TERMINOLOGY AS TOPIC;

EID: 85042757859     PISSN: 22136711     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.stemcr.2017.12.002     Document Type: Review

References (16)

1. Barrett, T., Clark, K., Gevorgyan, R., Gorelenkov, V., Gribov, E., Karsch-Mizrachi, I., Kimelman, M., Pruitt, K.D., Resenchuk, S., Tatusova, T., et al. BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res. 40:DI (2012), D57–D63.
2. De Sousa, P.A., Steeg, R., Wachter, E., Bruce, K., King, J., Hoeve, M., Khadun, S., McConnachie, G., Holder, J., Kurtz, A., et al. Rapid establishment of the European bank for induced pluripotent stem cells (EBiSC)—the hot start experience. Stem Cell Res. 20 (2017), 105–114.
3. Dirks, W.G., Drexler, H.G., Online verification of human cell line identity by STR DNA typing. Methods Mol. Biol. 731 (2011), 45–55.
4. Dirks, W.G., Drexler, H.G., STR DNA typing of human cell lines: detection of intra- and interspecies cross-contamination. Methods Mol. Biol. 946 (2013), 27–38.
5. Faulconbridge, A., Burdett, T., Brandizi, M., Gostev, M., Pereira, R., Vasant, D., Sarkans, U., Brazma, A., Parkinson, H., Updates to BioSamples database at European Bioinformatics Institute. Nucleic Acids Res. 42:DI (2014), D50–D52.
6. French, A., Bravery, C., Smith, J., Chandra, A., Archibald, P., Gold, J.D., Artzi, N., Kim, H.W., Barker, R.W., Meissner, A., et al. Enabling consistency in pluripotent stem cell- derived products for research and development and clinical applications through material standards. Stem Cells Transl. Med. 4 (2015), 217–223.
7. Isasi, R., Andrews, P.W., Baltz, J.M., Bredenoord, A.L., Burton, P., Chiu, I.M., Hull, S.C., Jung, J.W., Kurtz, A., Lomax, G., et al. Identifiability and privacy in pluripotent stem cell research. Cell Stem Cell 14 (2014), 427–430.
8. Kim, J.H., Kurtz, A., Yuan, B.Z., Zeng, F., Lomax, G., Loring, J.F., Crook, J., Ju, J.H., Clarke, L., Inamdar, M.S., et al. Report of the International Stem Cell Banking Initiative workshop activity: current hurdles and progress in seed-stock banking of human pluripotent stem cells. Stem Cells Transl. Med. 6 (2017), 1956–1962.
9. Kobold, S., Guhr, A., Löser, P., Kurtz, A., Human embryonic and induced pluripotent stem cell research trends: complementation and diversification of the field. Stem Cell Reports 4 (2015), 914–925.
10. Luong, M.X., Auerbach, J., Crook, J.M., Daheron, L., Hei, D., Lomax, G., Loring, J.F., Ludwig, T., Schlaeger, T.M., Smith, K.P., et al. A call for standardized naming and reporting of human ESC and iPSC lines. Cell Stem Cell 8 (2011), 357–359.
11. McKernan, R., Watt, F.M., What is the point of large-scale collections of human induced pluripotent stem cells?. Nat. Biotechnol. 31 (2013), 875–877.
12. Morrison, M., Bell, J., George, C., Harmon, S., Munsie, M., Kaye, J., The European General Data Protection Regulation: challenges and considerations for iPSC researchers and biobanks. Regen. Med. 12 (2017), 693–703.
13. Ruitberg, C.M., Reeder, D.J., Butler, J.M., STRBase: a short tandem repeat DNA database for the human identity testing community. Nucleic Acids Res. 29 (2001), 320–322.
14. Seltmann, S., Lekschas, F., Müller, R., Stachelscheid, H., Bittner, M.S., Zhang, W., Kidane, L., Seriola, A., Veiga, A., Stacey, G., et al. hPSCreg—the human pluripotent stem cell registry. Nucleic Acids Res. 44:DI (2016), D757–D763.
15. Wilkinson, M.D., Dumontier, M., Aalbersberg, I.J., Appleton, G., Axton, M., Baak, A., Blomberg, N., Boiten, J.W., da Silva Santos, L.B., Bourne, P.E., et al. The FAIR Guiding Principles for scientific data management and stewardship. Sci. Data, 15, 2016, 160018.
16. Yu, M., Selvaraj, S.K., Liang-Chu, M.M., Aghajani, S., Busse, M., Yuan, J., Lee, G., Peale, F., Klijn, C., Bourgon, R., et al. A resource for cell line authentication, annotation and quality control. Nature 520 (2015), 307–311.