Updates to BioSamples database at European Bioinformatics Institute

Nucleic Acids Research

Volumn 42, Issue D1, 2014, Pages

  Faulconbridge, Adam ^a   Burdett, Tony ^a   Brandizi, Marco ^a   Gostev, Mikhail ^a   Pereira, Rui ^a   Vasant, Drashtti ^a   Sarkans, Ugis ^a   Brazma, Alvis ^a   Parkinson, Helen ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER PREDICTION; COMPUTER PROGRAM; DATA BASE; GENOTYPE; INFORMATION PROCESSING; INFORMATION RETRIEVAL; PHENOTYPE; PRIORITY JOURNAL; WEB BROWSER; CELL LINE; EUROPE; GENETIC DATABASE; GENETICS; HUMAN; INTERNET; NEOPLASM; SYSTEM ANALYSIS; BIOSAMPLES DATABASE; CONCEPTUAL FRAMEWORK; DATA PROCESSING; ONTOLOGY; PROTEOMICS; VALIDATION PROCESS;

CELL LINE; DATABASES, GENETIC; EUROPE; HUMANS; INTERNET; NEOPLASMS; SYSTEMS INTEGRATION;

EID: 84891771567     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt1081     Document Type: Article

References (14)

1. Gymrek, M., McGuire, A.L., Golan, D., Halperin, E. and Erlich, Y. (2013) Identifying personal genomes by surname inference. Science, 339, 321-324.
2. Cochrane, G., Alako, B., Amid, C., Bower, L., Cerdeno-Tarraga, A., Cleland, I., Gibson, R., Goodgame, N., Jang, M., Kay, S. et al. (2013) Facing growth in the European Nucleotide Archive. Nucleic Acids Res., 41, D30-D35.
3. Parkinson, H., Sarkans, U., Kolesnikov, N., Abeygunawardena, N., Burdett, T., Dylag, M., Emam, I., Farne, A., Hastings, E., Holloway, E. et al. (2011) ArrayExpress update-an archive of microarray and high-throughput sequencing-based functional genomics experiments. Nucleic Acids Res., 39, D1002-D1004.
4. Vizcaino, J.A., Cote, R.G., Csordas, A., Dianes, J.A., Fabregat, A., Foster, J.M., Griss, J., Alpi, E., Birim, M., Contell, J. et al. (2013) The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. Nucleic Acids Res., 41, D1063-D1069.
5. Barrett, T., Clark, K., Gevorgyan, R., Gorelenkov, V., Gribov, E., Karsch-Mizrachi, I., Kimelman, M., Pruitt, K.D., Resenchuk, S., Tatusova, T. et al. (2012) BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata. Nucleic Acids Res., 40, D57-D63.
6. Gostev, M., Faulconbridge, A., Brandizi, M., Fernandez-Banet, J., Sarkans, U., Brazma, A. and Parkinson, H. (2012) The BioSample Database (BioSD) at the European Bioinformatics Institute. Nucleic Acids Res., 40, D64-D70.
7. Shepherd, R., Forbes, S.A., Beare, D., Bamford, S., Cole, C.G., Ward, S., Bindal, N., Gunasekaran, P., Jia, M., Kok, C.Y. et al. (2011) Data mining using the Catalogue of Somatic Mutations in Cancer BioMart. Database, 2011, bar018.
8. Flicek, P., Ahmed, I., Amode, M.R., Barrell, D., Beal, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fairley, S. et al. (2013) Ensembl 2013. Nucleic Acids Res., 41, D48-D55.
9. Malone, J., Holloway, E., Adamusiak, T., Kapushesky, M., Zheng, J., Kolesnikov, N., Zhukova, A., Brazma, A. and Parkinson, H. (2010) Modeling sample variables with an Experimental Factor Ontology. Bioinformatics, 26, 1112-1118.
10. Mungall, C.J., Torniai, C., Gkoutos, G.V., Lewis, S.E. and Haendel, M.A. (2012) Uberon, an integrative multi-species anatomy ontology. Genome Biol., 13, R5.
11. Rath, A., Olry, A., Dhombres, F., Milicic Brandt, M., Urbero, B. and Ayme, S. (2012) Representation of rare diseases in health information systems: the orphanet approach to serve a wide range of end users. Hum. Mutat., 33, 803-808.
12. Bernstein, B.E., Birney, E., Dunham, I., Green, E.D., Gunter, C. and Snyder, M. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
13. Brinkman, R.R., Courtot, M., Derom, D., Fostel, J.M., He, Y., Lord, P., Malone, J., Parkinson, H., Peters, B., Rocca-Serra, P. et al. (2010) Modeling biomedical experimental processes with OBI. J. Biomed. Semantics, 1, S7.
14. Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., Tatusova, T., Thomson, N., Allen, M.J., Angiuoli, S.V. et al. (2008) The minimum information about a genome sequence (MIGS) specification. Nat. Biotechnol., 26, 541-547.