-
1
-
-
84870260198
-
Analysis of the bread wheat genome using whole-genome shotgun sequencing
-
Brenchley R, Spannagl M, Pfeifer M et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 2012;491(7426):705-10.
-
(2012)
Nature
, vol.491
, Issue.7426
, pp. 705-710
-
-
Brenchley, R.1
Spannagl, M.2
Pfeifer, M.3
-
2
-
-
84904382612
-
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
-
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 2014;345(6194):1251788.
-
(2014)
Science
, vol.345
, Issue.6194
-
-
-
3
-
-
85019139117
-
An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
-
Clavijo BJ, Venturini L, Schudoma C et al. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Res 2017;27(5):885-96.
-
(2017)
Genome Res
, vol.27
, Issue.5
, pp. 885-896
-
-
Clavijo, B.J.1
Venturini, L.2
Schudoma, C.3
-
4
-
-
8444242268
-
Sequence composition, organization, and evolution of the core Triticeae genome
-
Li W, Zhang P, Fellers JP et al. Sequence composition, organization, and evolution of the core Triticeae genome. Plant J 2004;40(4):500-11.
-
(2004)
Plant J
, vol.40
, Issue.4
, pp. 500-511
-
-
Li, W.1
Zhang, P.2
Fellers, J.P.3
-
5
-
-
51649150815
-
Nuclear DNA content of some important plant species
-
Arumuganathan K, Earle ED. Nuclear DNA content of some important plant species. Plant Mol Biol Rep 1991;9(3):208-18.
-
(1991)
Plant Mol Biol Rep
, vol.9
, Issue.3
, pp. 208-218
-
-
Arumuganathan, K.1
Earle, E.D.2
-
6
-
-
84885968059
-
The MaSuRCA genome assembler
-
Zimin AV, Marcais G, Puiu D et al. The MaSuRCA genome assembler. Bioinformatics 2013;29(21):2669-77.
-
(2013)
Bioinformatics
, vol.29
, Issue.21
, pp. 2669-2677
-
-
Zimin, A.V.1
Marcais, G.2
Puiu, D.3
-
7
-
-
85015384520
-
Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
-
Zimin AV, Puiu D, Luo M et al. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm. Genome Res 2017;27(5):787-92.
-
(2017)
Genome Res
, vol.27
, Issue.5
, pp. 787-792
-
-
Zimin, A.V.1
Puiu, D.2
Luo, M.3
-
8
-
-
0034708758
-
AWhole-genome assembly of drosophila
-
Myers EW. AWhole-genome assembly of drosophila. Science 2000;287(5461):2196-204.
-
(2000)
Science
, vol.287
, Issue.5461
, pp. 2196-2204
-
-
Myers, E.W.1
-
9
-
-
85042179213
-
-
ftp://ftp.ccb.jhu.edu/pub/dpuiu/OTHER/SLURM/runCA.
-
-
-
-
10
-
-
84991694364
-
Phased diploid genome assembly with single-molecule real-time sequencing
-
Chin C, Peluso P, Sedlazeck FJ et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods 2016;13(12):1050-4.
-
(2016)
Nat Methods
, vol.13
, Issue.12
, pp. 1050-1054
-
-
Chin, C.1
Peluso, P.2
Sedlazeck, F.J.3
-
11
-
-
84880798154
-
Nonhybrid, finished microbial genome assemblies fromlong-read SMRT sequencing data
-
Chin C, Alexander DH, Marks P et al. Nonhybrid, finished microbial genome assemblies fromlong-read SMRT sequencing data. Nat Methods 2013;10(6):563-9.
-
(2013)
Nat Methods
, vol.10
, Issue.6
, pp. 563-569
-
-
Chin, C.1
Alexander, D.H.2
Marks, P.3
-
12
-
-
85042178290
-
-
https://github.com/PacificBiosciences/SMRT-Link.
-
-
-
-
13
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
R12.
-
Kurtz S, Phillippy A, Delcher AL et al. Versatile and open software for comparing large genomes. Genome Biol 2004;5(2):R12.
-
(2004)
Genome Biol
, vol.5
, Issue.2
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
-
14
-
-
77956279237
-
Assembly of large genomes using second-generation sequencing
-
Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res 2010;20(9):1165-73.
-
(2010)
Genome Res
, vol.20
, Issue.9
, pp. 1165-1173
-
-
Schatz, M.C.1
Delcher, A.L.2
Salzberg, S.L.3
-
15
-
-
84875898037
-
Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
-
Jia J, Zhao S, Kong X et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 2013;496(7443):91-95.
-
(2013)
Nature
, vol.496
, Issue.7443
, pp. 91-95
-
-
Jia, J.1
Zhao, S.2
Kong, X.3
-
16
-
-
4944242354
-
Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat
-
Safar J, Bartos J, Janda J et al. Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J 2004;39(6):960-8.
-
(2004)
Plant J
, vol.39
, Issue.6
, pp. 960-968
-
-
Safar, J.1
Bartos, J.2
Janda, J.3
-
17
-
-
84940907209
-
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
-
Simao FA, Waterhouse RM, Ioannidis P et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 2015;31(19):3210-2.
-
(2015)
Bioinformatics
, vol.31
, Issue.19
, pp. 3210-3212
-
-
Simao, F.A.1
Waterhouse, R.M.2
Ioannidis, P.3
-
18
-
-
85016153856
-
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
-
Zdobnov EM, Tegenfeldt F, Kuznetsov D et al. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic Acids Res 2017;45(D1):D744-9.
-
(2017)
Nucleic Acids Res
, vol.45 D1
, pp. D744-D749
-
-
Zdobnov, E.M.1
Tegenfeldt, F.2
Kuznetsov, D.3
-
19
-
-
85019153537
-
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
-
Mapleson D, Garcia Accinelli G, Kettleborough G et al. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. Bioinformatics 2017;33(4):574-6.
-
(2017)
Bioinformatics
, vol.33
, Issue.4
, pp. 574-576
-
-
Mapleson, D.1
Garcia Accinelli, G.2
Kettleborough, G.3
-
20
-
-
8544222699
-
A workshop report on wheat genome sequencing: international genome research on wheat consortium Genetics
-
Gill BS. A workshop report on wheat genome sequencing: international genome research on wheat consortium Genetics 2004;168(2):1087-96.
-
(2004)
, vol.168
, Issue.2
, pp. 1087-1096
-
-
Gill, B.S.1
-
21
-
-
85042188316
-
Supporting data for the near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
-
Zimin AV, Puiu D, Hall R et al. Supporting data for the near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum. GigaScience Database 2017. http://dx.doi.org/10.5524/100356.
-
(2017)
GigaScience Database
-
-
Zimin, A.V.1
Puiu, D.2
Hall, R.3
|