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Volumn 6, Issue 11, 2017, Pages

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum

Author keywords

Genome assembly; Hybrid assembly; PacBio sequencing; Plant genomes; Wheat genome

Indexed keywords

AEGILOPS TAUSCHII; ARTICLE; CHROMOSOME; GENETIC PROCEDURES; GENOME SIZE; NONHUMAN; PLANT GENETICS; PLANT GENOME; POACEAE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; TRITICUM AESTIVUM; WHOLE GENOME ASSEMBLY; GENETICS; MOLECULAR GENETICS; POLYPLOIDY; WHEAT; WHOLE GENOME SEQUENCING;

EID: 85041813060     PISSN: None     EISSN: 2047217X     Source Type: Journal    
DOI: 10.1093/gigascience/gix097     Document Type: Article
Times cited : (162)

References (21)
  • 1
    • 84870260198 scopus 로고    scopus 로고
    • Analysis of the bread wheat genome using whole-genome shotgun sequencing
    • Brenchley R, Spannagl M, Pfeifer M et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature 2012;491(7426):705-10.
    • (2012) Nature , vol.491 , Issue.7426 , pp. 705-710
    • Brenchley, R.1    Spannagl, M.2    Pfeifer, M.3
  • 2
    • 84904382612 scopus 로고    scopus 로고
    • A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
    • A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science 2014;345(6194):1251788.
    • (2014) Science , vol.345 , Issue.6194
  • 3
    • 85019139117 scopus 로고    scopus 로고
    • An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations
    • Clavijo BJ, Venturini L, Schudoma C et al. An improved assembly and annotation of the allohexaploid wheat genome identifies complete families of agronomic genes and provides genomic evidence for chromosomal translocations. Genome Res 2017;27(5):885-96.
    • (2017) Genome Res , vol.27 , Issue.5 , pp. 885-896
    • Clavijo, B.J.1    Venturini, L.2    Schudoma, C.3
  • 4
    • 8444242268 scopus 로고    scopus 로고
    • Sequence composition, organization, and evolution of the core Triticeae genome
    • Li W, Zhang P, Fellers JP et al. Sequence composition, organization, and evolution of the core Triticeae genome. Plant J 2004;40(4):500-11.
    • (2004) Plant J , vol.40 , Issue.4 , pp. 500-511
    • Li, W.1    Zhang, P.2    Fellers, J.P.3
  • 5
    • 51649150815 scopus 로고
    • Nuclear DNA content of some important plant species
    • Arumuganathan K, Earle ED. Nuclear DNA content of some important plant species. Plant Mol Biol Rep 1991;9(3):208-18.
    • (1991) Plant Mol Biol Rep , vol.9 , Issue.3 , pp. 208-218
    • Arumuganathan, K.1    Earle, E.D.2
  • 6
    • 84885968059 scopus 로고    scopus 로고
    • The MaSuRCA genome assembler
    • Zimin AV, Marcais G, Puiu D et al. The MaSuRCA genome assembler. Bioinformatics 2013;29(21):2669-77.
    • (2013) Bioinformatics , vol.29 , Issue.21 , pp. 2669-2677
    • Zimin, A.V.1    Marcais, G.2    Puiu, D.3
  • 7
    • 85015384520 scopus 로고    scopus 로고
    • Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm
    • Zimin AV, Puiu D, Luo M et al. Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm. Genome Res 2017;27(5):787-92.
    • (2017) Genome Res , vol.27 , Issue.5 , pp. 787-792
    • Zimin, A.V.1    Puiu, D.2    Luo, M.3
  • 8
    • 0034708758 scopus 로고    scopus 로고
    • AWhole-genome assembly of drosophila
    • Myers EW. AWhole-genome assembly of drosophila. Science 2000;287(5461):2196-204.
    • (2000) Science , vol.287 , Issue.5461 , pp. 2196-2204
    • Myers, E.W.1
  • 9
    • 85042179213 scopus 로고    scopus 로고
    • ftp://ftp.ccb.jhu.edu/pub/dpuiu/OTHER/SLURM/runCA.
  • 10
    • 84991694364 scopus 로고    scopus 로고
    • Phased diploid genome assembly with single-molecule real-time sequencing
    • Chin C, Peluso P, Sedlazeck FJ et al. Phased diploid genome assembly with single-molecule real-time sequencing. Nat Methods 2016;13(12):1050-4.
    • (2016) Nat Methods , vol.13 , Issue.12 , pp. 1050-1054
    • Chin, C.1    Peluso, P.2    Sedlazeck, F.J.3
  • 11
    • 84880798154 scopus 로고    scopus 로고
    • Nonhybrid, finished microbial genome assemblies fromlong-read SMRT sequencing data
    • Chin C, Alexander DH, Marks P et al. Nonhybrid, finished microbial genome assemblies fromlong-read SMRT sequencing data. Nat Methods 2013;10(6):563-9.
    • (2013) Nat Methods , vol.10 , Issue.6 , pp. 563-569
    • Chin, C.1    Alexander, D.H.2    Marks, P.3
  • 12
    • 85042178290 scopus 로고    scopus 로고
    • https://github.com/PacificBiosciences/SMRT-Link.
  • 13
    • 2942538300 scopus 로고    scopus 로고
    • Versatile and open software for comparing large genomes
    • R12.
    • Kurtz S, Phillippy A, Delcher AL et al. Versatile and open software for comparing large genomes. Genome Biol 2004;5(2):R12.
    • (2004) Genome Biol , vol.5 , Issue.2
    • Kurtz, S.1    Phillippy, A.2    Delcher, A.L.3
  • 14
    • 77956279237 scopus 로고    scopus 로고
    • Assembly of large genomes using second-generation sequencing
    • Schatz MC, Delcher AL, Salzberg SL. Assembly of large genomes using second-generation sequencing. Genome Res 2010;20(9):1165-73.
    • (2010) Genome Res , vol.20 , Issue.9 , pp. 1165-1173
    • Schatz, M.C.1    Delcher, A.L.2    Salzberg, S.L.3
  • 15
    • 84875898037 scopus 로고    scopus 로고
    • Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    • Jia J, Zhao S, Kong X et al. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature 2013;496(7443):91-95.
    • (2013) Nature , vol.496 , Issue.7443 , pp. 91-95
    • Jia, J.1    Zhao, S.2    Kong, X.3
  • 16
    • 4944242354 scopus 로고    scopus 로고
    • Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat
    • Safar J, Bartos J, Janda J et al. Dissecting large and complex genomes: flow sorting and BAC cloning of individual chromosomes from bread wheat. Plant J 2004;39(6):960-8.
    • (2004) Plant J , vol.39 , Issue.6 , pp. 960-968
    • Safar, J.1    Bartos, J.2    Janda, J.3
  • 17
    • 84940907209 scopus 로고    scopus 로고
    • BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
    • Simao FA, Waterhouse RM, Ioannidis P et al. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics 2015;31(19):3210-2.
    • (2015) Bioinformatics , vol.31 , Issue.19 , pp. 3210-3212
    • Simao, F.A.1    Waterhouse, R.M.2    Ioannidis, P.3
  • 18
    • 85016153856 scopus 로고    scopus 로고
    • OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs
    • Zdobnov EM, Tegenfeldt F, Kuznetsov D et al. OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs. Nucleic Acids Res 2017;45(D1):D744-9.
    • (2017) Nucleic Acids Res , vol.45 D1 , pp. D744-D749
    • Zdobnov, E.M.1    Tegenfeldt, F.2    Kuznetsov, D.3
  • 19
    • 85019153537 scopus 로고    scopus 로고
    • KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
    • Mapleson D, Garcia Accinelli G, Kettleborough G et al. KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies. Bioinformatics 2017;33(4):574-6.
    • (2017) Bioinformatics , vol.33 , Issue.4 , pp. 574-576
    • Mapleson, D.1    Garcia Accinelli, G.2    Kettleborough, G.3
  • 20
    • 8544222699 scopus 로고    scopus 로고
    • A workshop report on wheat genome sequencing: international genome research on wheat consortium Genetics
    • Gill BS. A workshop report on wheat genome sequencing: international genome research on wheat consortium Genetics 2004;168(2):1087-96.
    • (2004) , vol.168 , Issue.2 , pp. 1087-1096
    • Gill, B.S.1
  • 21
    • 85042188316 scopus 로고    scopus 로고
    • Supporting data for the near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum
    • Zimin AV, Puiu D, Hall R et al. Supporting data for the near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum. GigaScience Database 2017. http://dx.doi.org/10.5524/100356.
    • (2017) GigaScience Database
    • Zimin, A.V.1    Puiu, D.2    Hall, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.