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Volumn 33, Issue 4, 2017, Pages 574-576

KAT: A K-mer analysis toolkit to quality control NGS datasets and genome assemblies

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCE; FRAXINUS; GENETICS; HIGH THROUGHPUT SEQUENCING; PLANT GENOME; PROCEDURES; QUALITY CONTROL; SOFTWARE; STANDARDS;

EID: 85019153537     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btw663     Document Type: Article
Times cited : (350)

References (9)
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  • 2
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    • Genomic DNA k-mer spectra: Models and modalities
    • Chor, B. et al. (2009) Genomic DNA k-mer spectra: models and modalities. Genome Biol., 10, R108.
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  • 3
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    • Rapid evaluation and quality control of next generation sequencing data with faqcs
    • Lo, C.C. and Chain, P.S.G. (2014) Rapid evaluation and quality control of next generation sequencing data with faqcs. BMC Bioinformatics, 15, 366.
    • (2014) BMC Bioinformatics , vol.15 , pp. 366
    • Lo, C.C.1    Chain, P.S.G.2
  • 4
    • 79952592810 scopus 로고    scopus 로고
    • A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
    • Marçais, G. and Kingsford, C. (2011) A fast, lock-free approach for efficient parallel counting of occurrences of k-mers. Bioinformatics, 27, 764-770.
    • (2011) Bioinformatics , vol.27 , pp. 764-770
    • Marçais, G.1    Kingsford, C.2
  • 5
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies-the next generation
    • Metzker, M.L. (2010) Sequencing technologies-the next generation. Nat. Rev. Genet., 11, 31-46.
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    • Metzker, M.L.1
  • 6
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    • Current challenges in de novo plant genome sequencing and assembly
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    • Schatz, M.C.1
  • 7
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    • Exploring genome characteristics and sequence quality without a reference
    • Simpson, J.T. (2014) Exploring genome characteristics and sequence quality without a reference. Bioinformatics, 30, 1228-1235.
    • (2014) Bioinformatics , vol.30 , pp. 1228-1235
    • Simpson, J.T.1
  • 8
    • 84873041419 scopus 로고    scopus 로고
    • HTQC: A fast quality control toolkit for illumina sequencing data
    • Yang, X. et al. (2013) HTQC: a fast quality control toolkit for illumina sequencing data. BMC Bioinformatics, 14, 33.
    • (2013) BMC Bioinformatics , vol.14 , pp. 33
    • Yang, X.1
  • 9
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    • These are not the k-mers you are looking for: Efficient online k-mer counting using a probabilistic data structure
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    • Zhang, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.