메뉴 건너뛰기




Volumn 253, Issue , 2018, Pages 235-243

Metagenomic analysis of antibiotic resistance genes in coastal industrial mariculture systems

Author keywords

Antibiotic resistance genes; Coastal zone; Conventional mariculture system; Metagenomics; Recirculating mariculture system

Indexed keywords

ANTIBIOTICS; BACTERIA; COASTAL ZONES; FISH PONDS; GENES; NITRIFICATION; POLLUTION CONTROL; WASTEWATER TREATMENT;

EID: 85041393083     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2018.01.035     Document Type: Article
Times cited : (135)

References (39)
  • 1
    • 40049098140 scopus 로고    scopus 로고
    • Comparative analysis of genetic diversity and incidence of virulence factors and antibiotic resistance among enterococcal populations from raw fruit and vegetable foods, water and soil, and clinical samples
    • Abriouel, H., Omar, N.B., Molinos, A.C., López, R.L., Grande, M.J., Martínez-Viedma, P., Ortega, E., Cañamero, M.M., Galvez, A., Comparative analysis of genetic diversity and incidence of virulence factors and antibiotic resistance among enterococcal populations from raw fruit and vegetable foods, water and soil, and clinical samples. Int. J. Food Microbiol. 123 (2008), 38–49.
    • (2008) Int. J. Food Microbiol. , vol.123 , pp. 38-49
    • Abriouel, H.1    Omar, N.B.2    Molinos, A.C.3    López, R.L.4    Grande, M.J.5    Martínez-Viedma, P.6    Ortega, E.7    Cañamero, M.M.8    Galvez, A.9
  • 2
    • 84958213026 scopus 로고    scopus 로고
    • Assessment of anaerobic bacterial diversity and its effects on anaerobic system stability and the occurrence of antibiotic resistance genes
    • Aydin, S., Ince, B., Ince, O., Assessment of anaerobic bacterial diversity and its effects on anaerobic system stability and the occurrence of antibiotic resistance genes. Bioresour. Technol. 207 (2016), 332–338.
    • (2016) Bioresour. Technol. , vol.207 , pp. 332-338
    • Aydin, S.1    Ince, B.2    Ince, O.3
  • 3
    • 84925021592 scopus 로고    scopus 로고
    • Fast and sensitive protein alignment using DIAMOND
    • Buchfink, B., Xie, C., Huson, D.H., Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12 (2015), 59–60.
    • (2015) Nat. Methods , vol.12 , pp. 59-60
    • Buchfink, B.1    Xie, C.2    Huson, D.H.3
  • 4
    • 0033837396 scopus 로고    scopus 로고
    • Aminoglycoside-modifying enzymes in high-level streptomycin and gentamicin resistant Enterococcus spp. in Spain
    • Campo, R., Tenorio, C., Rubio, C., Castillo, J., Torres, C., Gómez-Lus, R., Aminoglycoside-modifying enzymes in high-level streptomycin and gentamicin resistant Enterococcus spp. in Spain. Int. J. Antimicrob. Agents 15 (2000), 221–226.
    • (2000) Int. J. Antimicrob. Agents , vol.15 , pp. 221-226
    • Campo, R.1    Tenorio, C.2    Rubio, C.3    Castillo, J.4    Torres, C.5    Gómez-Lus, R.6
  • 5
    • 84962182285 scopus 로고    scopus 로고
    • Virome-associated antibiotic-resistance genes in an experimental aquaculture facility
    • fiw003
    • Colombo, S., Arioli, S., Guglielmetti, S., Lunelli, F., Mora, D., Virome-associated antibiotic-resistance genes in an experimental aquaculture facility. FEMS Microbiol. Ecol., 92(3), 2016 fiw003.
    • (2016) FEMS Microbiol. Ecol. , vol.92 , Issue.3
    • Colombo, S.1    Arioli, S.2    Guglielmetti, S.3    Lunelli, F.4    Mora, D.5
  • 6
    • 85038014956 scopus 로고    scopus 로고
    • An update on β-lactamase inhibitor discovery and development
    • Docquier, J., Mangani, S., An update on β-lactamase inhibitor discovery and development. Drug Resist. Update 36 (2018), 13–29.
    • (2018) Drug Resist. Update , vol.36 , pp. 13-29
    • Docquier, J.1    Mangani, S.2
  • 8
    • 84921803438 scopus 로고    scopus 로고
    • Prevalence of antibiotic resistance genes and bacterial pathogens in long-term manured greenhouse soils as revealed by metagenomic survey
    • Fang, H., Wang, H., Cai, L., Yu, Y., Prevalence of antibiotic resistance genes and bacterial pathogens in long-term manured greenhouse soils as revealed by metagenomic survey. Environ. Sci. Technol. 49 (2015), 1095–1104.
    • (2015) Environ. Sci. Technol. , vol.49 , pp. 1095-1104
    • Fang, H.1    Wang, H.2    Cai, L.3    Yu, Y.4
  • 9
    • 84862806791 scopus 로고    scopus 로고
    • Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment
    • Gao, P., Mao, D., Luo, Y., Wang, L., Xu, B., Xu, L., Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment. Water Res. 46 (2012), 2355–2364.
    • (2012) Water Res. , vol.46 , pp. 2355-2364
    • Gao, P.1    Mao, D.2    Luo, Y.3    Wang, L.4    Xu, B.5    Xu, L.6
  • 10
    • 85021760467 scopus 로고    scopus 로고
    • Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements
    • Guo, J., Li, J., Chen, H., Bond, P., Yuan, Z., Metagenomic analysis reveals wastewater treatment plants as hotspots of antibiotic resistance genes and mobile genetic elements. Water Res. 123 (2017), 468–478.
    • (2017) Water Res. , vol.123 , pp. 468-478
    • Guo, J.1    Li, J.2    Chen, H.3    Bond, P.4    Yuan, Z.5
  • 12
    • 84880831180 scopus 로고    scopus 로고
    • Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
    • Hu, Y., Yang, X., Qin, J., Lu, N., Cheng, G., Wu, N., Pan, Y., Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota. Nat. Commun., 4, 2013, 2151.
    • (2013) Nat. Commun. , vol.4 , pp. 2151
    • Hu, Y.1    Yang, X.2    Qin, J.3    Lu, N.4    Cheng, G.5    Wu, N.6    Pan, Y.7
  • 13
    • 33845684839 scopus 로고    scopus 로고
    • Characterisation and transfer of antibiotic resistance genes from enterococci isolated from food
    • Hummel, A., Holzapfel, W.H., Franz, C.M., Characterisation and transfer of antibiotic resistance genes from enterococci isolated from food. Syst. Appl. Microbiol. 30 (2007), 1–7.
    • (2007) Syst. Appl. Microbiol. , vol.30 , pp. 1-7
    • Hummel, A.1    Holzapfel, W.H.2    Franz, C.M.3
  • 14
    • 85026733947 scopus 로고    scopus 로고
    • Fate of antibiotic resistance genes in mesophilic and thermophilic anaerobic digestion of chemically enhanced primary treatment (CEPT) sludge
    • Jang, H.M., Shin, J., Choi, S., Shin, S.G., Park, K.Y., Cho, J., Kim, Y.M., Fate of antibiotic resistance genes in mesophilic and thermophilic anaerobic digestion of chemically enhanced primary treatment (CEPT) sludge. Bioresour. Technol. 244 (2017), 433–444.
    • (2017) Bioresour. Technol. , vol.244 , pp. 433-444
    • Jang, H.M.1    Shin, J.2    Choi, S.3    Shin, S.G.4    Park, K.Y.5    Cho, J.6    Kim, Y.M.7
  • 16
    • 79951882096 scopus 로고    scopus 로고
    • Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
    • Kristiansson, E., Fick, J., Janzon, A., Grabic, R., Rutgersson, C., Weijdegard, B., Soderstrom, H., Larsson, D.G.J., Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PLoS One, 6(2), 2011, e17038.
    • (2011) PLoS One , vol.6 , Issue.2 , pp. e17038
    • Kristiansson, E.1    Fick, J.2    Janzon, A.3    Grabic, R.4    Rutgersson, C.5    Weijdegard, B.6    Soderstrom, H.7    Larsson, D.G.J.8
  • 18
    • 81055133764 scopus 로고    scopus 로고
    • Tertiary-treated municipal wastewater is a significant point source of antibiotic resistance genes into Duluth-superior Harbor
    • LaPara, T.M., Burch, T.R., McNamara, P.J., Tan, D.T., Yan, M., Eichmiller, J.J., Tertiary-treated municipal wastewater is a significant point source of antibiotic resistance genes into Duluth-superior Harbor. Environ. Sci. Technol. 45:22 (2011), 9543–9549.
    • (2011) Environ. Sci. Technol. , vol.45 , Issue.22 , pp. 9543-9549
    • LaPara, T.M.1    Burch, T.R.2    McNamara, P.J.3    Tan, D.T.4    Yan, M.5    Eichmiller, J.J.6
  • 20
    • 84905730165 scopus 로고    scopus 로고
    • An integrated catalog of reference genes in the human gut microbiome
    • Li, J., Jia, H., Cai, X., Zhong, H., Feng, Q., Sunagawa, S., Arumugam, M., An integrated catalog of reference genes in the human gut microbiome. Nat. Biotechnol. 32:8 (2014), 834–841.
    • (2014) Nat. Biotechnol. , vol.32 , Issue.8 , pp. 834-841
    • Li, J.1    Jia, H.2    Cai, X.3    Zhong, H.4    Feng, Q.5    Sunagawa, S.6    Arumugam, M.7
  • 21
    • 84945484378 scopus 로고    scopus 로고
    • Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes
    • Li, B., Yang, Y., Ma, L., Ju, F., Guo, F., Tiedje, J.M., Zhang, T., Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes. ISME J. 9:11 (2015), 2490–2502.
    • (2015) ISME J. , vol.9 , Issue.11 , pp. 2490-2502
    • Li, B.1    Yang, Y.2    Ma, L.3    Ju, F.4    Guo, F.5    Tiedje, J.M.6    Zhang, T.7
  • 22
    • 84884222114 scopus 로고    scopus 로고
    • Mechanisms of antimicrobial resistance in finfish aquaculture environments
    • Miranda, C.D., Tello, A., Keen, P.L., Mechanisms of antimicrobial resistance in finfish aquaculture environments. Front. Microbiol., 4, 2013, 233.
    • (2013) Front. Microbiol. , vol.4 , pp. 233
    • Miranda, C.D.1    Tello, A.2    Keen, P.L.3
  • 23
    • 78650415638 scopus 로고    scopus 로고
    • Release of antibiotic resistant bacteria and genes in the effluent and biosolids of five wastewater utilities in Michigan
    • Munir, M., Wong, K., Xagoraraki, I., Release of antibiotic resistant bacteria and genes in the effluent and biosolids of five wastewater utilities in Michigan. Water Res. 45:2 (2011), 681–693.
    • (2011) Water Res. , vol.45 , Issue.2 , pp. 681-693
    • Munir, M.1    Wong, K.2    Xagoraraki, I.3
  • 24
    • 85011967165 scopus 로고    scopus 로고
    • The resistome of farmed fish feces contributes to the enrichment of antibiotic resistance genes in sediments below Baltic Sea fish farms
    • Muziasari, W.I., Pitkänen, L.K., Sørum, H., Stedtfeld, R.D., Tiedje, J.M., Virta, M., The resistome of farmed fish feces contributes to the enrichment of antibiotic resistance genes in sediments below Baltic Sea fish farms. Front. Microbiol., 7, 2017, 2137.
    • (2017) Front. Microbiol. , vol.7 , pp. 2137
    • Muziasari, W.I.1    Pitkänen, L.K.2    Sørum, H.3    Stedtfeld, R.D.4    Tiedje, J.M.5    Virta, M.6
  • 25
    • 33845302994 scopus 로고    scopus 로고
    • Antibiotic resistance genes as emerging contaminants: studies in northern Colorado
    • Pruden, A., Pei, R., Storteboom, H., Carlson, K.H., Antibiotic resistance genes as emerging contaminants: studies in northern Colorado. Environ. Sci. Technol. 40 (2006), 7445–7450.
    • (2006) Environ. Sci. Technol. , vol.40 , pp. 7445-7450
    • Pruden, A.1    Pei, R.2    Storteboom, H.3    Carlson, K.H.4
  • 26
    • 84907225684 scopus 로고    scopus 로고
    • Alteration of the human gut microbiome in liver cirrhosis
    • Qin, N., Yang, F., Li, A., Prifti, E., Chen, Y., Shao, L., Guo, J., Alteration of the human gut microbiome in liver cirrhosis. Nature 513:7516 (2014), 59–64.
    • (2014) Nature , vol.513 , Issue.7516 , pp. 59-64
    • Qin, N.1    Yang, F.2    Li, A.3    Prifti, E.4    Chen, Y.5    Shao, L.6    Guo, J.7
  • 27
    • 52049101563 scopus 로고    scopus 로고
    • Aquaculture practices and potential human health risks: current knowledge and future priorities
    • Sapkota, A., Sapkota, A.R., KucharskiM, Burke J, McKenzie, S., Walker, P., Lawrence, R., Aquaculture practices and potential human health risks: current knowledge and future priorities. Environ. Int. 34 (2008), 1215–1226.
    • (2008) Environ. Int. , vol.34 , pp. 1215-1226
    • Sapkota, A.1    Sapkota, A.R.2    KucharskiM, B.J.3    McKenzie, S.4    Walker, P.5    Lawrence, R.6
  • 28
    • 82955161740 scopus 로고    scopus 로고
    • Occurrence of antibiotic resistance and characterization of resistance genes and integrons in Enterobacteriaceae isolated from integrated fish farms in south China
    • Su, H.C., Ying, G.G., Tao, R., Zhang, R.Q., Fogarty, L.R., Kolpin, D.W., Occurrence of antibiotic resistance and characterization of resistance genes and integrons in Enterobacteriaceae isolated from integrated fish farms in south China. J. Environ. Monit. 13 (2011), 3229–3236.
    • (2011) J. Environ. Monit. , vol.13 , pp. 3229-3236
    • Su, H.C.1    Ying, G.G.2    Tao, R.3    Zhang, R.Q.4    Fogarty, L.R.5    Kolpin, D.W.6
  • 29
    • 85017415935 scopus 로고    scopus 로고
    • Seasonal variation and removal efficiency of antibiotic resistance genes during wastewater treatment of swine farms
    • Sui, Q., Zhang, J., Tong, J., Chen, M., Wei, Y., Seasonal variation and removal efficiency of antibiotic resistance genes during wastewater treatment of swine farms. Environ. Sci. Pollut. Res. 24:10 (2017), 9048–9057.
    • (2017) Environ. Sci. Pollut. Res. , vol.24 , Issue.10 , pp. 9048-9057
    • Sui, Q.1    Zhang, J.2    Tong, J.3    Chen, M.4    Wei, Y.5
  • 30
    • 84963799557 scopus 로고    scopus 로고
    • Changes of resistome, mobilome and potential hosts of antibiotic resistance genes during the transformation of anaerobic digestion from mesophilic to thermophilic
    • Tian, Z., Zhang, Y., Yu, B., Yang, M., Changes of resistome, mobilome and potential hosts of antibiotic resistance genes during the transformation of anaerobic digestion from mesophilic to thermophilic. Water Res. 98 (2016), 261–269.
    • (2016) Water Res. , vol.98 , pp. 261-269
    • Tian, Z.1    Zhang, Y.2    Yu, B.3    Yang, M.4
  • 31
    • 84929993120 scopus 로고    scopus 로고
    • Environmental characteristics of Agulhas rings affect interocean plankton transport
    • Villar, E., Farrant, G.K., Follows, M., Garczarek, L., Speich, S., Audic, S., Bittner, L., Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237), 2015, 1261447.
    • (2015) Science , vol.348 , Issue.6237 , pp. 1261447
    • Villar, E.1    Farrant, G.K.2    Follows, M.3    Garczarek, L.4    Speich, S.5    Audic, S.6    Bittner, L.7
  • 32
    • 84962194814 scopus 로고    scopus 로고
    • Metagenomic profiles of antibiotic resistance genes (ARGs) in paddy soils from South China
    • fiw023
    • Xiao, K.Q., Li, B., Ma, L., Bao, P., Zhou, X., Zhang, T., Zhu, Y.G., Metagenomic profiles of antibiotic resistance genes (ARGs) in paddy soils from South China. FEMS Microbiol. Ecol., 92(3), 2016 fiw023.
    • (2016) FEMS Microbiol. Ecol. , vol.92 , Issue.3
    • Xiao, K.Q.1    Li, B.2    Ma, L.3    Bao, P.4    Zhou, X.5    Zhang, T.6    Zhu, Y.G.7
  • 33
    • 84937252193 scopus 로고    scopus 로고
    • Antibiotics, antibiotic resistance genes, and bacterial community composition in fresh water aquaculture environment in China
    • Xiong, W., Sun, Y., Zhang, T., Ding, X., Li, Y., Wang, M., Zeng, Z., Antibiotics, antibiotic resistance genes, and bacterial community composition in fresh water aquaculture environment in China. Microb. Ecol. 70 (2015), 425–432.
    • (2015) Microb. Ecol. , vol.70 , pp. 425-432
    • Xiong, W.1    Sun, Y.2    Zhang, T.3    Ding, X.4    Li, Y.5    Wang, M.6    Zeng, Z.7
  • 34
    • 84919848520 scopus 로고    scopus 로고
    • Occurrence of antibiotics and antibiotic resistance genes in a sewage treatment plant and its effluent-receiving river
    • Xu, J., Xu, Y., Wang, H., Guo, C., Qiu, H., He, Y., Zhang, Y., Li, X., Meng, W., Occurrence of antibiotics and antibiotic resistance genes in a sewage treatment plant and its effluent-receiving river. Chemosphere 119 (2015), 1379–1385.
    • (2015) Chemosphere , vol.119 , pp. 1379-1385
    • Xu, J.1    Xu, Y.2    Wang, H.3    Guo, C.4    Qiu, H.5    He, Y.6    Zhang, Y.7    Li, X.8    Meng, W.9
  • 35
    • 84884252582 scopus 로고    scopus 로고
    • Exploring variation of antibiotic resistance genes in activated sludge over a four-year period through a metagenomic approach
    • Yang, Y., Li, B., Ju, F., Zhang, T., Exploring variation of antibiotic resistance genes in activated sludge over a four-year period through a metagenomic approach. Environ. Sci. Technol. 47:18 (2013), 10197–10205.
    • (2013) Environ. Sci. Technol. , vol.47 , Issue.18 , pp. 10197-10205
    • Yang, Y.1    Li, B.2    Ju, F.3    Zhang, T.4
  • 36
    • 84902333101 scopus 로고    scopus 로고
    • Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach
    • Yang, Y., Li, B., Zou, S., Fang, H.H.P., Zhang, T., Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach. Water Res. 62 (2014), 97–106.
    • (2014) Water Res. , vol.62 , pp. 97-106
    • Yang, Y.1    Li, B.2    Zou, S.3    Fang, H.H.P.4    Zhang, T.5
  • 37
    • 85001759355 scopus 로고    scopus 로고
    • Antibiotics: Pharmacokinetics, toxicity, resistance and multidrug efflux pumps
    • Yilmaz, C., Özcengiz, G., Antibiotics: Pharmacokinetics, toxicity, resistance and multidrug efflux pumps. Biochem. Pharmacol. 133 (2017), 43–62.
    • (2017) Biochem. Pharmacol. , vol.133 , pp. 43-62
    • Yilmaz, C.1    Özcengiz, G.2
  • 38
    • 84960539974 scopus 로고    scopus 로고
    • Fate of antibiotic resistance genes and its drivers during anaerobic co-digestion of food waste and sewage sludge based on microwave pretreatment
    • Zhang, J., Chen, M., Sui, Q., Wang, R., Tong, J., Wei, Y., Fate of antibiotic resistance genes and its drivers during anaerobic co-digestion of food waste and sewage sludge based on microwave pretreatment. Bioresour. Technol. 217 (2016), 28–36.
    • (2016) Bioresour. Technol. , vol.217 , pp. 28-36
    • Zhang, J.1    Chen, M.2    Sui, Q.3    Wang, R.4    Tong, J.5    Wei, Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.