Assessment of anaerobic bacterial diversity and its effects on anaerobic system stability and the occurrence of antibiotic resistance genes

Bioresource Technology

Volumn 207, Issue , 2016, Pages 332-338

  Aydin, Sevcan ^a   Ince, Bahar ^b   Ince, Orhan ^a  

^a ISTANBUL TECHNICAL UNIVERSITY   (Turkey)

^b BOGAZICI UNIVERSITY   (Turkey)

Author keywords

Anaerobic bacterial diversity; Antibiotic resistance; Antibiotic resistance genes; Antibiotics; Microbial community

Indexed keywords

BACTERIA; BIODEGRADATION; GENES; MICROBIOLOGY; MICROORGANISMS; POLYMERASE CHAIN REACTION; SYSTEM STABILITY;

ANAEROBIC REACTOR; ANAEROBIC SYSTEMS; ANTIBIOTIC RESISTANCE; ANTIBIOTIC RESISTANCE GENES; BACTERIAL COMMUNITY; BACTERIAL DIVERSITY; ENHANCED BIODEGRADATION; MICROBIAL COMMUNITIES;

ANTIBIOTICS;

BIOGAS; ERYTHROMYCIN; TETRACYCLINE; ANTIINFECTIVE AGENT; WATER POLLUTANT;

ANOXIC CONDITIONS; ANTIBIOTIC RESISTANCE; ANTIBIOTICS; BACTERIUM; BIODEGRADATION; BIOREACTOR; CONCENTRATION (COMPOSITION); GENE; GENOMICS; MICROBIAL COMMUNITY; SORPTION;

ACIDOBACTERIA; ACINETOBACTER; ACTINOBACTERIA; ANAEROBIC BACTERIUM; ANAEROBIC REACTOR; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENE; BACTEROIDETES; BIODEGRADATION; CHEMICAL OXYGEN DEMAND; COMMUNITY STRUCTURE; CONTROLLED STUDY; DRUG ELIMINATION; FIRMICUTES; FUSOBACTERIUM; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MICROBIAL BIOMASS; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; NONHUMAN; PRIORITY JOURNAL; PROTEOBACTERIA; REACTION TIME; SEQUENCING BATCH REACTOR; SYNERGISTETES; ULTRAVIOLET SPECTROSCOPY; ANALYSIS; BIODIVERSITY; BIOREACTOR; BIOREMEDIATION; CLASSIFICATION; GENETICS; GRAM NEGATIVE BACTERIUM; METABOLISM; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; SEWAGE; WATER POLLUTANT;

ACINETOBACTER; BACTERIA (MICROORGANISMS); NEGIBACTERIA;

ANTI-BACTERIAL AGENTS; BACTERIA, ANAEROBIC; BIODEGRADATION, ENVIRONMENTAL; BIODIVERSITY; BIOREACTORS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DRUG RESISTANCE, MICROBIAL; ERYTHROMYCIN; GRAM-NEGATIVE BACTERIA; REAL-TIME POLYMERASE CHAIN REACTION; TETRACYCLINE; WASTE DISPOSAL, FLUID; WATER POLLUTANTS, CHEMICAL;

EID: 84958213026     PISSN: 09608524     EISSN: 18732976     Source Type: Journal    
DOI: 10.1016/j.biortech.2016.01.080     Document Type: Article

References (32)

1. American Public Health Association (APHA) Standard Methods for the Examination of Water and Wastewater 2005, American Public Health Association, Washington, DC. 21st ed.
2. Amin M.M., Zilles J.L., Greiner J., Charbonneau S., Raskin L., Morgenroth E. Influence of the antibiotic erythromycin on anaerobic treatment of a pharmaceutical wastewater. Environ. Sci. Technol. 2006, 40:3971-3977.
3. Aydin S., Cetecioglu Z., Arikan O., Ince B., Ozbayram E.G., Ince O. Inhibitory effects of antibiotic combinations on syntrophic bacteria, homoacetogens and methanogens. Chemosphere 2015, 120:515-520.
4. Aydin S., Ince B., Cetecioglu Z., Ozbayram E.G., Shahi A., Ince O. Combined effect of erythromycin, tetracycline and sulfamethoxazole on performance of anaerobic sequencing batch reactors. Bioresour. Technol. 2015, 186:207-214.
5. Aydin S., Ince B., Ince O. Development of antibiotic resistance genes in microbial communities during long-term operation of anaerobic reactors in the treatment of pharmaceutical wastewater. Water Res. 2015, 83:337-344.
6. Aydin S., Shahi A., Ozbayram E.G., Ince B., Ince O. Use of PCR-DGGE based molecular methods to assessment of microbial diversity during anaerobic treatment of antibiotic combinations. Bioresour. Technol. 2015, 192:735-740.
7. Aydin S., Ince B., Ince O. Application of real-time PCR to determination of combined effect of antibiotics on Bacteria, Methanogenic Archaea, Archaea in anaerobic sequencing batch reactors. Water Res. 2015, 76:88-98.
8. Birošová L., Mackuľak T., Bodík I., Ryba J., Škubák J., Grabic R. Pilot study of seasonal occurrence and distribution of antibiotics and drug resistant bacteria in wastewater treatment plants in Slovakia. Sci. Total Environ. 2014, 490:440-444.
9. Blahna M.T., Zalewski C.A., Reuer J., Kahlmeter G., Foxman B., Marrs C.F. The role of horizontal gene transfer in the spread of trimethoprim-sulfamethoxazole resistance among uropathogenic Escherichia coli in Europe and Canada. J. Antimicrob. Chemother. 2006, 57:666-672.
10. Blair J.M., Webber M.A., Baylay A.J., Ogbolu D.O., Piddock L.J. Molecular mechanisms of antibiotic resistance. Nat. Rev. Microbiol. 2015, 13:42-51.
11. Calero-Cáceres W., Melgarejo A., Colomer-Lluch M., Stoll C., Lucena F., Jofre J., Muniesa M. Sludge as a potential important source of antibiotic resistance genes in both the bacterial and bacteriophage fractions. Environ. Sci. Technol. 2014, 48:7602-7611.
12. 2O. Water Res. 2011, 45:3098-3106.
13. Faria C., Vaz-Moreira I., Serapicos E., Nunes O.C., Manaia C.M. Antibiotic resistance in coagulase negative staphylococci isolated from wastewater and drinking water. Sci. Total Environ. 2009, 407:3876-3882.
14. Gao P., Mao D., Luo Y., Wang L., Xu B., Xu L. Occurrence of sulfonamide and tetracycline-resistant bacteria and resistance genes in aquaculture environment. Water Res. 2012, 46:2355-2364.
15. Liu L., Liu Y.H., Wang Z., Liu C.X., Huang X., Zhu G.F. Behavior of tetracycline and sulfamethazine with corresponding resistance genes from swine wastewater in pilot-scale constructed wetlands. J. Hazard. Mater. 2014, 278:304-310.
16. Luo G., Angelidaki I. Analysis of bacterial communities and bacterial pathogens in a biogas plant by the combination of ethidium monoazide, PCR and Ion Torrent sequencing. Water Res. 2014, 60:156-163.
17. Ma J., Frear C., Wang Z.W., Yu L., Zhao Q., Li X., Chen S. A simple methodology for rate-limiting step determination for anaerobic digestion of complex substrates and effect of microbial community ratio. Bioresour. Technol. 2013, 134:391-395.
18. Miao Y., Liao R., Zhang X.X., Wang Y., Wang Z., Shi P., Li A. Metagenomic insights into Cr (VI) effect on microbial communities and functional genes of an expanded granular sludge bed reactor treating high-nitrate wastewater. Water Res. 2015, 76:43-52.
19. Mick E., Sorek R. High-resolution metagenomics. Nat. Biotechnol. 2014, 32:750-751.
20. Naquin A., Shrestha A., Sherpa M., Nathaniel R., Boopathy R. Presence of antibiotic resistance genes in a sewage treatment plant in Thibodaux, Louisiana, USA. Bioresour. Technol. 2015, 188:79-83.
21. Oktem Y.A., Ince O., Sallis P., Donnelly T., Ince B.K. Anaerobic treatment of a chemical synthesis-based pharmaceutical wastewater in a hybrid upflow anaerobic sludge blanket reactor. Bioresour. Technol. 2008, 99:1089-1096.
22. Pruden A., Pei R., Storteboom H., Carlson K.H. Antibiotic resistance genes as emerging contaminants: studies in northern Colorado. Environ. Sci. Technol. 2006, 40:7445-7450.
23. Resende J.A., Silva V.L., de Oliveira T.L.R., de Oliveira Fortunato S., da Costa Carneiro J., Otenio M.H., Diniz C.G. Prevalence and persistence of potentially pathogenic and antibiotic resistant bacteria during anaerobic digestion treatment of cattle manure. Bioresour. Technol. 2014, 153:284-291.
24. Rodriguez-Mozaz S., Chamorro S., Marti E., Huerta B., Gros M., Sànchez-Melsió A., Balcázar J.L. Occurrence of antibiotics and antibiotic resistance genes in hospital and urban wastewaters and their impact on the receiving river. Water Res. 2015, 69:234-242.
25. Sundberg C., Al-Soud W.A., Larsson M., Alm E., Yekta S.S., Svensson B.H., Karlsson A. 454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters. FEMS Microbiol. Ecol. 2013, 85:612-626.
26. Taylor J.D., Cottingham S.D., Billinge J., Cunliffe M. Seasonal microbial community dynamics correlate with phytoplankton-derived polysaccharides in surface coastal waters. ISME J. 2014, 8:245-248.
27. 2O. Appl. Microbiol. Biotechnol. 2014, 98:2667-2673.
28. Yu Z., Michel F.C., Hansen G., Wittum T., Morrison M. Development and application of real-time PCR assays for quantification of genes encoding tetracycline resistance. Appl. Environ. Microbiol. 2005, 71:6926-6933.
29. Zhang T., Zhang M., Zhang X., Fang H.H. Tetracycline resistance genes and tetracycline resistant lactose-fermenting Enterobacteriaceae in activated sludge of sewage treatment plants. Environ. Sci. Technol. 2009, 43:3455-3460.
30. Zhang T., Shao M.F., Ye L. 454 pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J. 2012, 6:1137-1147.
31. Zhang W., Huang M.H., Qi F.F., Sun P.Z., Van Ginkel S.W. Effect of trace tetracycline concentrations on the structure of a microbial community and the development of tetracycline resistance genes in sequencing batch reactors. Bioresour. Technol. 2013, 150:9-14.
32. Zhang Z.Z., Zhang Q.Q., Guo Q., Chen Q.Q., Jiang X.Y., Jin R.C. Anaerobic ammonium-oxidizing bacteria gain antibiotic resistance during long-term acclimatization. Bioresour. Technol. 2015, 192:756-764.