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Volumn 22, Issue 2, 2018, Pages 441-455

Variation in Activity State, Axonal Projection, and Position Define the Transcriptional Identity of Individual Neocortical Projection Neurons

Author keywords

activity dependent plasticity; barrel cortex; corticothalamic neurons; neocortex; neuronal identity; single cell RNA sequencing; somatosensory cortex; transcriptional variation

Indexed keywords

TRANSCRIPTOME;

EID: 85041194061     PISSN: None     EISSN: 22111247     Source Type: Journal    
DOI: 10.1016/j.celrep.2017.12.046     Document Type: Article
Times cited : (52)

References (61)
  • 1
    • 84898786848 scopus 로고    scopus 로고
    • Translaminar inhibitory cells recruited by layer 6 corticothalamic neurons suppress visual cortex
    • Bortone, D.S., Olsen, S.R., Scanziani, M., Translaminar inhibitory cells recruited by layer 6 corticothalamic neurons suppress visual cortex. Neuron 82 (2014), 474–485.
    • (2014) Neuron , vol.82 , pp. 474-485
    • Bortone, D.S.1    Olsen, S.R.2    Scanziani, M.3
  • 2
    • 0028965591 scopus 로고
    • Corticothalamic projections from the primary visual cortex in rats: a single fiber study using biocytin as an anterograde tracer
    • Bourassa, J., Deschênes, M., Corticothalamic projections from the primary visual cortex in rats: a single fiber study using biocytin as an anterograde tracer. Neuroscience 66 (1995), 253–263.
    • (1995) Neuroscience , vol.66 , pp. 253-263
    • Bourassa, J.1    Deschênes, M.2
  • 3
    • 0028798119 scopus 로고
    • Corticothalamic projections from the cortical barrel field to the somatosensory thalamus in rats: a single-fibre study using biocytin as an anterograde tracer
    • Bourassa, J., Pinault, D., Deschênes, M., Corticothalamic projections from the cortical barrel field to the somatosensory thalamus in rats: a single-fibre study using biocytin as an anterograde tracer. Eur. J. Neurosci. 7 (1995), 19–30.
    • (1995) Eur. J. Neurosci. , vol.7 , pp. 19-30
    • Bourassa, J.1    Pinault, D.2    Deschênes, M.3
  • 5
    • 84962086336 scopus 로고    scopus 로고
    • Morphological substrates for parallel streams of corticogeniculate feedback originating in both V1 and V2 of the macaque monkey
    • Briggs, F., Kiley, C.W., Callaway, E.M., Usrey, W.M., Morphological substrates for parallel streams of corticogeniculate feedback originating in both V1 and V2 of the macaque monkey. Neuron 90 (2016), 388–399.
    • (2016) Neuron , vol.90 , pp. 388-399
    • Briggs, F.1    Kiley, C.W.2    Callaway, E.M.3    Usrey, W.M.4
  • 6
    • 84984671990 scopus 로고    scopus 로고
    • RNA sequencing from neural ensembles activated during fear conditioning in the mouse temporal association cortex
    • Cho, J.H., Huang, B.S., Gray, J.M., RNA sequencing from neural ensembles activated during fear conditioning in the mouse temporal association cortex. Sci. Rep., 6, 2016, 31753.
    • (2016) Sci. Rep. , vol.6 , pp. 31753
    • Cho, J.H.1    Huang, B.S.2    Gray, J.M.3
  • 7
    • 84928983540 scopus 로고    scopus 로고
    • Statistical significance of variables driving systematic variation in high-dimensional data
    • Chung, N.C., Storey, J.D., Statistical significance of variables driving systematic variation in high-dimensional data. Bioinformatics 31 (2015), 545–554.
    • (2015) Bioinformatics , vol.31 , pp. 545-554
    • Chung, N.C.1    Storey, J.D.2
  • 10
    • 84961385886 scopus 로고    scopus 로고
    • Variation is function: are single cell differences functionally important? Testing the hypothesis that single cell variation is required for aggregate function
    • Dueck, H., Eberwine, J., Kim, J., Variation is function: are single cell differences functionally important? Testing the hypothesis that single cell variation is required for aggregate function. BioEssays 38 (2016), 172–180.
    • (2016) BioEssays , vol.38 , pp. 172-180
    • Dueck, H.1    Eberwine, J.2    Kim, J.3
  • 11
    • 0037374587 scopus 로고    scopus 로고
    • Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system
    • Ehlers, M.D., Activity level controls postsynaptic composition and signaling via the ubiquitin-proteasome system. Nat. Neurosci. 6 (2003), 231–242.
    • (2003) Nat. Neurosci. , vol.6 , pp. 231-242
    • Ehlers, M.D.1
  • 12
    • 46149096244 scopus 로고    scopus 로고
    • Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous system
    • Flavell, S.W., Greenberg, M.E., Signaling mechanisms linking neuronal activity to gene expression and plasticity of the nervous system. Annu. Rev. Neurosci. 31 (2008), 563–590.
    • (2008) Annu. Rev. Neurosci. , vol.31 , pp. 563-590
    • Flavell, S.W.1    Greenberg, M.E.2
  • 13
    • 52949099941 scopus 로고    scopus 로고
    • Barrel Cortex
    • Cambridge University Press Cambridge
    • Fox, K., Barrel Cortex. 2008, Cambridge University Press, Cambridge.
    • (2008)
    • Fox, K.1
  • 14
    • 0035998835 scopus 로고    scopus 로고
    • Model-based clustering, discriminant analysis and density estimation
    • Fraley, C., Raftery, A.E., Model-based clustering, discriminant analysis and density estimation. J. Am. Stat. Assoc. 97 (2002), 611–631.
    • (2002) J. Am. Stat. Assoc. , vol.97 , pp. 611-631
    • Fraley, C.1    Raftery, A.E.2
  • 15
    • 85041235584 scopus 로고    scopus 로고
    • mclust Version 4 for R: Normal mixture modeling for model-based clustering, classification, and density estimation. Technical Report No. 597, Department of Statistics, University of Washington.
    • Fraley, C., Raftery, A.E., Murphy, T.B., and Scrucca, L. (2012). mclust Version 4 for R: Normal mixture modeling for model-based clustering, classification, and density estimation. Technical Report No. 597, Department of Statistics, University of Washington.
    • (2012)
    • Fraley, C.1    Raftery, A.E.2    Murphy, T.B.3    Scrucca, L.4
  • 16
    • 34548651693 scopus 로고    scopus 로고
    • Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs
    • Gong, S., Doughty, M., Harbaugh, C.R., Cummins, A., Hatten, M.E., Heintz, N., Gerfen, C.R., Targeting Cre recombinase to specific neuron populations with bacterial artificial chromosome constructs. J. Neurosci. 27 (2007), 9817–9823.
    • (2007) J. Neurosci. , vol.27 , pp. 9817-9823
    • Gong, S.1    Doughty, M.2    Harbaugh, C.R.3    Cummins, A.4    Hatten, M.E.5    Heintz, N.6    Gerfen, C.R.7
  • 17
    • 85020793825 scopus 로고    scopus 로고
    • A corticothalamic circuit for dynamic switching between feature detection and discrimination
    • Guo, W., Clause, A.R., Barth-Maron, A., Polley, D.B., A corticothalamic circuit for dynamic switching between feature detection and discrimination. Neuron 95 (2017), 180–194.e5.
    • (2017) Neuron , vol.95 , pp. 180-194.e5
    • Guo, W.1    Clause, A.R.2    Barth-Maron, A.3    Polley, D.B.4
  • 18
    • 85025700652 scopus 로고    scopus 로고
    • Corticogeniculate feedback sharpens the temporal precision and spatial resolution of visual signals in the ferret
    • Hasse, J.M., Briggs, F., Corticogeniculate feedback sharpens the temporal precision and spatial resolution of visual signals in the ferret. Proc. Natl. Acad. Sci. U S A 114 (2017), E6222–E6230.
    • (2017) Proc. Natl. Acad. Sci. U S A , vol.114 , pp. E6222-E6230
    • Hasse, J.M.1    Briggs, F.2
  • 20
    • 84961169621 scopus 로고    scopus 로고
    • On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-seq data
    • Hicks, S., Teng, M., Irizarry, R.A., On the widespread and critical impact of systematic bias and batch effects in single-cell RNA-seq data. bioRxiv, 2015, 10.1101/025528.
    • (2015) bioRxiv
    • Hicks, S.1    Teng, M.2    Irizarry, R.A.3
  • 21
    • 3543077645 scopus 로고    scopus 로고
    • Distribution of vasoactive intestinal peptide and pituitary adenylate cyclase-activating polypeptide receptors (VPAC1, VPAC2, and PAC1 receptor) in the rat brain
    • Joo, K.M., Chung, Y.H., Kim, M.K., Nam, R.H., Lee, B.L., Lee, K.H., Cha, C.I., Distribution of vasoactive intestinal peptide and pituitary adenylate cyclase-activating polypeptide receptors (VPAC1, VPAC2, and PAC1 receptor) in the rat brain. J. Comp. Neurol. 476 (2004), 388–413.
    • (2004) J. Comp. Neurol. , vol.476 , pp. 388-413
    • Joo, K.M.1    Chung, Y.H.2    Kim, M.K.3    Nam, R.H.4    Lee, B.L.5    Lee, K.H.6    Cha, C.I.7
  • 22
    • 84897139457 scopus 로고    scopus 로고
    • Every cell is special: genome-wide studies add a new dimension to single-cell biology
    • Junker, J.P., van Oudenaarden, A., Every cell is special: genome-wide studies add a new dimension to single-cell biology. Cell 157 (2014), 8–11.
    • (2014) Cell , vol.157 , pp. 8-11
    • Junker, J.P.1    van Oudenaarden, A.2
  • 23
    • 0023126795 scopus 로고
    • Local circuitry of identified projection neurons in cat visual cortex brain slices
    • Katz, L.C., Local circuitry of identified projection neurons in cat visual cortex brain slices. J. Neurosci. 7 (1987), 1223–1249.
    • (1987) J. Neurosci. , vol.7 , pp. 1223-1249
    • Katz, L.C.1
  • 24
    • 0042237848 scopus 로고    scopus 로고
    • Corticothalamic projections from the rat primary somatosensory cortex
    • Killackey, H.P., Sherman, S.M., Corticothalamic projections from the rat primary somatosensory cortex. J. Neurosci. 23 (2003), 7381–7384.
    • (2003) J. Neurosci. , vol.23 , pp. 7381-7384
    • Killackey, H.P.1    Sherman, S.M.2
  • 26
    • 84904317557 scopus 로고    scopus 로고
    • Layer 6 corticothalamic neurons activate a cortical output layer, layer 5a
    • Kim, J., Matney, C.J., Blankenship, A., Hestrin, S., Brown, S.P., Layer 6 corticothalamic neurons activate a cortical output layer, layer 5a. J. Neurosci. 34 (2014), 9656–9664.
    • (2014) J. Neurosci. , vol.34 , pp. 9656-9664
    • Kim, J.1    Matney, C.J.2    Blankenship, A.3    Hestrin, S.4    Brown, S.P.5
  • 28
    • 85041206464 scopus 로고    scopus 로고
    • Rtsne: T-distributed stochastic neighbor embedding using Barnes-Hus implementation. R package version 0.10.
    • Krijthe, J. (2015). Rtsne: T-distributed stochastic neighbor embedding using Barnes-Hus implementation. R package version 0.10. https://CRAN.R-project.org/package=Rtsne.
    • (2015)
    • Krijthe, J.1
  • 29
    • 59649104456 scopus 로고    scopus 로고
    • Subthreshold receptive field properties distinguish different classes of corticothalamic neurons in the somatosensory system
    • Kwegyir-Afful, E.E., Simons, D.J., Subthreshold receptive field properties distinguish different classes of corticothalamic neurons in the somatosensory system. J. Neurosci. 29 (2009), 964–972.
    • (2009) J. Neurosci. , vol.29 , pp. 964-972
    • Kwegyir-Afful, E.E.1    Simons, D.J.2
  • 32
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • Langfelder, P., Horvath, S., WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics, 9, 2008, 559.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 34
    • 85016502564 scopus 로고    scopus 로고
    • CIDR: ultrafast and accurate clustering through imputation for single-cell RNA-seq data
    • Lin, P., Troup, M., Ho, J.W., CIDR: ultrafast and accurate clustering through imputation for single-cell RNA-seq data. Genome Biol., 18, 2017, 59.
    • (2017) Genome Biol. , vol.18 , pp. 59
    • Lin, P.1    Troup, M.2    Ho, J.W.3
  • 35
    • 84964545059 scopus 로고    scopus 로고
    • Single-cell transcriptome sequencing: recent advances and remaining challenges
    • Liu, S., Trapnell, C., Single-cell transcriptome sequencing: recent advances and remaining challenges. F1000Res., 5, 2016, 182.
    • (2016) F1000Res. , vol.5 , pp. 182
    • Liu, S.1    Trapnell, C.2
  • 36
    • 79958766042 scopus 로고    scopus 로고
    • Mechanisms of specificity in neuronal activity-regulated gene transcription
    • Lyons, M.R., West, A.E., Mechanisms of specificity in neuronal activity-regulated gene transcription. Prog. Neurobiol. 94 (2011), 259–295.
    • (2011) Prog. Neurobiol. , vol.94 , pp. 259-295
    • Lyons, M.R.1    West, A.E.2
  • 39
    • 84899820942 scopus 로고    scopus 로고
    • Cortical control of adaptation and sensory relay mode in the thalamus
    • Mease, R.A., Krieger, P., Groh, A., Cortical control of adaptation and sensory relay mode in the thalamus. Proc. Natl. Acad. Sci. USA 111 (2014), 6798–6803.
    • (2014) Proc. Natl. Acad. Sci. USA , vol.111 , pp. 6798-6803
    • Mease, R.A.1    Krieger, P.2    Groh, A.3
  • 41
    • 84921409129 scopus 로고    scopus 로고
    • DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex
    • Molyneaux, B.J., Goff, L.A., Brettler, A.C., Chen, H.H., Hrvatin, S., Rinn, J.L., Arlotta, P., DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex. Neuron 85 (2015), 275–288.
    • (2015) Neuron , vol.85 , pp. 275-288
    • Molyneaux, B.J.1    Goff, L.A.2    Brettler, A.C.3    Chen, H.H.4    Hrvatin, S.5    Rinn, J.L.6    Arlotta, P.7
  • 42
    • 84857788120 scopus 로고    scopus 로고
    • Gain control by layer six in cortical circuits of vision
    • Olsen, S.R., Bortone, D.S., Adesnik, H., Scanziani, M., Gain control by layer six in cortical circuits of vision. Nature 483 (2012), 47–52.
    • (2012) Nature , vol.483 , pp. 47-52
    • Olsen, S.R.1    Bortone, D.S.2    Adesnik, H.3    Scanziani, M.4
  • 43
    • 84922321862 scopus 로고    scopus 로고
    • Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
    • Pollen, A.A., Nowakowski, T.J., Shuga, J., Wang, X., Leyrat, A.A., Lui, J.H., Li, N., Szpankowski, L., Fowler, B., Chen, P., et al. Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex. Nat. Biotechnol. 32 (2014), 1053–1058.
    • (2014) Nat. Biotechnol. , vol.32 , pp. 1053-1058
    • Pollen, A.A.1    Nowakowski, T.J.2    Shuga, J.3    Wang, X.4    Leyrat, A.A.5    Lui, J.H.6    Li, N.7    Szpankowski, L.8    Fowler, B.9    Chen, P.10
  • 44
    • 84930246211 scopus 로고    scopus 로고
    • The types of retinal ganglion cells: current status and implications for neuronal classification
    • Sanes, J.R., Masland, R.H., The types of retinal ganglion cells: current status and implications for neuronal classification. Annu. Rev. Neurosci. 38 (2015), 221–246.
    • (2015) Annu. Rev. Neurosci. , vol.38 , pp. 221-246
    • Sanes, J.R.1    Masland, R.H.2
  • 48
    • 84901323269 scopus 로고    scopus 로고
    • Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs
    • Spiegel, I., Mardinly, A.R., Gabel, H.W., Bazinet, J.E., Couch, C.H., Tzeng, C.P., Harmin, D.A., Greenberg, M.E., Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs. Cell 157 (2014), 1216–1229.
    • (2014) Cell , vol.157 , pp. 1216-1229
    • Spiegel, I.1    Mardinly, A.R.2    Gabel, H.W.3    Bazinet, J.E.4    Couch, C.H.5    Tzeng, C.P.6    Harmin, D.A.7    Greenberg, M.E.8
  • 51
    • 0037386972 scopus 로고    scopus 로고
    • Vasoactive intestinal polypeptide and pituitary adenylate cyclase-activating polypeptide activate hyperpolarization-activated cationic current and depolarize thalamocortical neurons in vitro
    • Sun, Q.Q., Prince, D.A., Huguenard, J.R., Vasoactive intestinal polypeptide and pituitary adenylate cyclase-activating polypeptide activate hyperpolarization-activated cationic current and depolarize thalamocortical neurons in vitro. J. Neurosci. 23 (2003), 2751–2758.
    • (2003) J. Neurosci. , vol.23 , pp. 2751-2758
    • Sun, Q.Q.1    Prince, D.A.2    Huguenard, J.R.3
  • 54
    • 84994860357 scopus 로고    scopus 로고
    • Revealing the vectors of cellular identity with single-cell genomics
    • Wagner, A., Regev, A., Yosef, N., Revealing the vectors of cellular identity with single-cell genomics. Nat. Biotechnol. 34 (2016), 1145–1160.
    • (2016) Nat. Biotechnol. , vol.34 , pp. 1145-1160
    • Wagner, A.1    Regev, A.2    Yosef, N.3
  • 55
    • 0032815204 scopus 로고    scopus 로고
    • The effect of vibrissa deprivation pattern on the form of plasticity induced in rat barrel cortex
    • Wallace, H., Fox, K., The effect of vibrissa deprivation pattern on the form of plasticity induced in rat barrel cortex. Somatosens. Mot. Res. 16 (1999), 122–138.
    • (1999) Somatosens. Mot. Res. , vol.16 , pp. 122-138
    • Wallace, H.1    Fox, K.2
  • 56
    • 85041421989 scopus 로고    scopus 로고
    • Focal gain control of thalamic visual receptive fields by layer 6 corticothalamic feedback
    • Published online December 17 2017.
    • Wang, W., Andolina, I.M., Lu, Y., Jones, H.E., Sillito, A.M., Focal gain control of thalamic visual receptive fields by layer 6 corticothalamic feedback. Cereb. Cortex, 2016, 10.1093/cercor/bhw376 Published online December 17, 2017.
    • (2016) Cereb. Cortex
    • Wang, W.1    Andolina, I.M.2    Lu, Y.3    Jones, H.E.4    Sillito, A.M.5
  • 57
    • 80054793380 scopus 로고    scopus 로고
    • Neuronal activity-regulated gene transcription in synapse development and cognitive function
    • West, A.E., Greenberg, M.E., Neuronal activity-regulated gene transcription in synapse development and cognitive function. Cold Spring Harb. Perspect. Biol., 3, 2011, 3.
    • (2011) Cold Spring Harb. Perspect. Biol. , vol.3 , pp. 3
    • West, A.E.1    Greenberg, M.E.2
  • 60
    • 85027857981 scopus 로고    scopus 로고
    • Neuronal cell-type classification: challenges, opportunities and the path forward
    • Zeng, H., Sanes, J.R., Neuronal cell-type classification: challenges, opportunities and the path forward. Nat. Rev. Neurosci. 18 (2017), 530–546.
    • (2017) Nat. Rev. Neurosci. , vol.18 , pp. 530-546
    • Zeng, H.1    Sanes, J.R.2
  • 61
    • 0342617726 scopus 로고    scopus 로고
    • Intracortical axonal projections of lamina VI cells of the primary somatosensory cortex in the rat: a single-cell labeling study
    • Zhang, Z.W., Deschênes, M., Intracortical axonal projections of lamina VI cells of the primary somatosensory cortex in the rat: a single-cell labeling study. J. Neurosci. 17 (1997), 6365–6379.
    • (1997) J. Neurosci. , vol.17 , pp. 6365-6379
    • Zhang, Z.W.1    Deschênes, M.2


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