-
1
-
-
77956876055
-
Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams
-
PID: 20724091
-
Beaz-Hidalgo R, Diéguez AL, Cleenwerck I, Balboa S, Doce A et al (2010) Vibrio celticus sp. nov., a new Vibrio species belonging to the Splendidus clade with pathogenic potential for clams. Syst Appl Microbiol 33:311–315
-
(2010)
Syst Appl Microbiol
, vol.33
, pp. 311-315
-
-
Beaz-Hidalgo, R.1
Diéguez, A.L.2
Cleenwerck, I.3
Balboa, S.4
Doce, A.5
-
2
-
-
77953403000
-
Characterization of Vibrio gigantis and Vibrio pomeroyi isolated from invertebrates of Peter the Great Bay, Sea of Japan
-
Beleneva IA, Kukhlevskii AD (2010) Characterization of Vibrio gigantis and Vibrio pomeroyi isolated from invertebrates of Peter the Great Bay, Sea of Japan. Microbiology 79:422–427
-
(2010)
Microbiology
, vol.79
, pp. 422-427
-
-
Beleneva, I.A.1
Kukhlevskii, A.D.2
-
3
-
-
0036934410
-
A novel Vibrio sp. pathogen of the coral Pocillopora damicornis
-
Ben-Haim Y, Rosenberg E (2002) A novel Vibrio sp. pathogen of the coral Pocillopora damicornis. Mar Biol 141:47–55
-
(2002)
Mar Biol
, vol.141
, pp. 47-55
-
-
Ben-Haim, Y.1
Rosenberg, E.2
-
4
-
-
0346106077
-
Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis
-
PID: 12656189
-
Ben-Haim Y, Thompson FL, Thompson CC, Cnockaert MC, Hoste B et al (2003) Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int J Syst Evol Microbiol 53:309–315
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 309-315
-
-
Ben-Haim, Y.1
Thompson, F.L.2
Thompson, C.C.3
Cnockaert, M.C.4
Hoste, B.5
-
5
-
-
84890425927
-
Vibrio splendidus, Vibrio ichthyoenteri and Vibrio pacinii isolated from the digestive tract microflora of larval ballan wrasse, Labrus bergylta Ascanius, and goldsinny wrasse, Ctenolabrus rupestris (L.)
-
PID: 23651278
-
Birkbeck TH, Treasurer JW (2014) Vibrio splendidus, Vibrio ichthyoenteri and Vibrio pacinii isolated from the digestive tract microflora of larval ballan wrasse, Labrus bergylta Ascanius, and goldsinny wrasse, Ctenolabrus rupestris (L.). J Fish Dis 37:69–74
-
(2014)
J Fish Dis
, vol.37
, pp. 69-74
-
-
Birkbeck, T.H.1
Treasurer, J.W.2
-
6
-
-
8744276542
-
Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals
-
PID: 15528553
-
Cervino JM, Hayes RL, Polson SW, Polson SC, Goreau TJ et al (2004) Relationship of Vibrio species infection and elevated temperatures to yellow blotch/band disease in Caribbean corals. Appl Environ Microbiol 70:6855–6864
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6855-6864
-
-
Cervino, J.M.1
Hayes, R.L.2
Polson, S.W.3
Polson, S.C.4
Goreau, T.J.5
-
7
-
-
84864453108
-
jModelTest 2: more models, new heuristics and parallel computing
-
PID: 22847109
-
Darriba D, Taboada GL, Doallo R, Posada D (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat Methods 9:772
-
(2012)
Nat Methods
, vol.9
, pp. 772
-
-
Darriba, D.1
Taboada, G.L.2
Doallo, R.3
Posada, D.4
-
8
-
-
58149122869
-
Isolation and pathogenicity of pathogens from skin ulceration disease and viscera ejection syndrome of the sea cucumber Apostichopus japonicas
-
Deng H, He C, Zhou Z, Liu C, Tan K et al (2009) Isolation and pathogenicity of pathogens from skin ulceration disease and viscera ejection syndrome of the sea cucumber Apostichopus japonicas. Aquaculture 287:18–27
-
(2009)
Aquaculture
, vol.287
, pp. 18-27
-
-
Deng, H.1
He, C.2
Zhou, Z.3
Liu, C.4
Tan, K.5
-
9
-
-
80053646318
-
Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussatus
-
PID: 21075909
-
Diéguez AL, Beaz-Hidalgo R, Cleenwerck I, Balboa S, De Vos PL et al (2011) Vibrio atlanticus sp. nov. and Vibrio artabrorum sp. nov., isolated from the clams Ruditapes philippinarum and Ruditapes decussatus. Int J Syst Evol Microbiol 61:2406–2411
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 2406-2411
-
-
Diéguez, A.L.1
Beaz-Hidalgo, R.2
Cleenwerck, I.3
Balboa, S.4
De Vos, P.L.5
-
10
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
PID: 15034147
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
11
-
-
0037671502
-
Vibrio lentus associated with diseased wild octopus (Octopus vulgaris)
-
PID: 12788284
-
Farto R, Armada SP, Montes M, Guisande JA, Pérez MJ et al (2003) Vibrio lentus associated with diseased wild octopus (Octopus vulgaris). J Invertebr Pathol 83:149–156
-
(2003)
J Invertebr Pathol
, vol.83
, pp. 149-156
-
-
Farto, R.1
Armada, S.P.2
Montes, M.3
Guisande, J.A.4
Pérez, M.J.5
-
12
-
-
9944261393
-
Vibrio crassostreae sp. nov., isolated from the haemolymph of oysters (Crassostrea gigas)
-
PID: 15545447
-
Faury N, Saulnier D, Thompson FL, Gay M, Swings J et al (2004) Vibrio crassostreae sp. nov., isolated from the haemolymph of oysters (Crassostrea gigas). Int J Syst Evol Microbiol 54:2137–2140
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 2137-2140
-
-
Faury, N.1
Saulnier, D.2
Thompson, F.L.3
Gay, M.4
Swings, J.5
-
13
-
-
84962120846
-
Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica
-
PID: 26813578
-
Finore I, Orlando P, Di Donato P, Leone L, Nicolaus B et al (2016) Nesterenkonia aurantiaca sp. nov., an alkaliphilic actinobacterium isolated from Antarctica. Int J Syst Evol Microbiol 66:1554–1560
-
(2016)
Int J Syst Evol Microbiol
, vol.66
, pp. 1554-1560
-
-
Finore, I.1
Orlando, P.2
Di Donato, P.3
Leone, L.4
Nicolaus, B.5
-
14
-
-
84983143193
-
Multilocus sequence analysis (MLSA) in prokaryotic taxonomy
-
PID: 25959541
-
Glaeser SP, Kämpfer P (2015) Multilocus sequence analysis (MLSA) in prokaryotic taxonomy. Syst Appl Microbiol 38:237–245
-
(2015)
Syst Appl Microbiol
, vol.38
, pp. 237-245
-
-
Glaeser, S.P.1
Kämpfer, P.2
-
15
-
-
34250631603
-
Vibrios of the spotted rose snapper Lutjanus guttatus Steindachner, 1869 from northwestern Mexico
-
PID: 17578416
-
Gómez-Gil B, Fajer-Ávila E, García-Vargas F (2007) Vibrios of the spotted rose snapper Lutjanus guttatus Steindachner, 1869 from northwestern Mexico. J Appl Microbiol 102:1518–1526
-
(2007)
J Appl Microbiol
, vol.102
, pp. 1518-1526
-
-
Gómez-Gil, B.1
Fajer-Ávila, E.2
García-Vargas, F.3
-
16
-
-
77955836000
-
Diversity of vibrios in the haemolymph of the spider crab Maja brachydactyla
-
PID: 20374412
-
Gómez-Gil B, Roque A, Lacuesta B, Rotland G (2010) Diversity of vibrios in the haemolymph of the spider crab Maja brachydactyla. J Appl Microbiol 109:918–926
-
(2010)
J Appl Microbiol
, vol.109
, pp. 918-926
-
-
Gómez-Gil, B.1
Roque, A.2
Lacuesta, B.3
Rotland, G.4
-
17
-
-
0019515852
-
Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria
-
PID: 6165736
-
Halebian S, Harris B, Finegold SM, Rolfe RD (1981) Rapid method that aids in distinguishing Gram-positive from Gram-negative anaerobic bacteria. J Clin Microbiol 13:444–448
-
(1981)
J Clin Microbiol
, vol.13
, pp. 444-448
-
-
Halebian, S.1
Harris, B.2
Finegold, S.M.3
Rolfe, R.D.4
-
18
-
-
84939887281
-
Population dynamics of Vibrio and Pseudomonas species isolated from farmed Tasmanian Atlantic salmon (Salmo salar L.): a seasonal study
-
PID: 25027277
-
Hatje E, Neuman C, Stevenson H, Bowman JP, Katouli M (2014) Population dynamics of Vibrio and Pseudomonas species isolated from farmed Tasmanian Atlantic salmon (Salmo salar L.): a seasonal study. Microb Ecol 68:679–687
-
(2014)
Microb Ecol
, vol.68
, pp. 679-687
-
-
Hatje, E.1
Neuman, C.2
Stevenson, H.3
Bowman, J.P.4
Katouli, M.5
-
19
-
-
0035962109
-
Growth, differentiation and death of Vibrio shiloi in coral tissue as a function of seawater temperature
-
Israely T, Banin E, Rosenberg E (2001) Growth, differentiation and death of Vibrio shiloi in coral tissue as a function of seawater temperature. Aquat Microbial Ecol 24:1–8
-
(2001)
Aquat Microbial Ecol
, vol.24
, pp. 1-8
-
-
Israely, T.1
Banin, E.2
Rosenberg, E.3
-
20
-
-
41149160218
-
Isolation, characterization and identification of Bacteria associated with mucus of Acropora cervicornis Coral from Bidong Island, Terengganu, Malaysia
-
Kalimutho M, Ahmad A, Kassim Z (2007) Isolation, characterization and identification of Bacteria associated with mucus of Acropora cervicornis Coral from Bidong Island, Terengganu, Malaysia. Malaysian J Sci 26:27–39
-
(2007)
Malaysian J Sci
, vol.26
, pp. 27-39
-
-
Kalimutho, M.1
Ahmad, A.2
Kassim, Z.3
-
21
-
-
84885226239
-
Vibrio hemicentroti sp. nov., an alginate lyase-producing bacterium, isolated from the gut microflora of sea urchin (Hemicentrotus pulcherrimus)
-
PID: 23625262
-
Kim D, Baik KS, Hwang YS, Choi JS, Kwon J et al (2013) Vibrio hemicentroti sp. nov., an alginate lyase-producing bacterium, isolated from the gut microflora of sea urchin (Hemicentrotus pulcherrimus). Int J Syst Evol Microbiol 63:3697–3703
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 3697-3703
-
-
Kim, D.1
Baik, K.S.2
Hwang, Y.S.3
Choi, J.S.4
Kwon, J.5
-
22
-
-
84893511241
-
Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes
-
PID: 24505072
-
Kim M, Oh HS, Park SC, Chun J (2014) Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 64:346–351
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 346-351
-
-
Kim, M.1
Oh, H.S.2
Park, S.C.3
Chun, J.4
-
23
-
-
0242709343
-
Multispecies microbial mutualisms on coral reefs: the host as a habitat
-
Knowlton N, Rohwer F (2003) Multispecies microbial mutualisms on coral reefs: the host as a habitat. Am Nat 162:51–62
-
(2003)
Am Nat
, vol.162
, pp. 51-62
-
-
Knowlton, N.1
Rohwer, F.2
-
24
-
-
33747354385
-
Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter
-
PID: 16885273
-
Koren O, Rosenberg E (2006) Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Appl Environ Microbiol 72:5254–5259
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5254-5259
-
-
Koren, O.1
Rosenberg, E.2
-
25
-
-
0023089142
-
Specific and sensitive plate assay for bacterial lipases
-
Kouker G, Jaeger KE (1987) Specific and sensitive plate assay for bacterial lipases. Appl Environ Mircrobiol 53:211–213
-
(1987)
Appl Environ Mircrobiol
, vol.53
, pp. 211-213
-
-
Kouker, G.1
Jaeger, K.E.2
-
26
-
-
0034922401
-
Vibrio shiloii sp. nov., the causative agent of bleaching of the coral Oculina patagonica
-
PID: 11491336
-
Kushmaro A, Banin E, Loya Y, Stackebrandt E, Rosenberg E (2001) Vibrio shiloii sp. nov., the causative agent of bleaching of the coral Oculina patagonica. Int J Syst Evol Microbiol 51:1383–1388
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 1383-1388
-
-
Kushmaro, A.1
Banin, E.2
Loya, Y.3
Stackebrandt, E.4
Rosenberg, E.5
-
27
-
-
84875381819
-
Vibrio toranzoniae sp. nov., a new member of the Splendidus clade in the genus Vibrio
-
PID: 23280322
-
Lasa A, Diéguez AL, Romalde JL (2013) Vibrio toranzoniae sp. nov., a new member of the Splendidus clade in the genus Vibrio. Syst Appl Microbiol 36:96–100
-
(2013)
Syst Appl Microbiol
, vol.36
, pp. 96-100
-
-
Lasa, A.1
Diéguez, A.L.2
Romalde, J.L.3
-
28
-
-
27844431637
-
Vibrio gigantis sp. nov., isolated from the haemolymph of cultured oysters (Crassostrea gigas)
-
PID: 16280478
-
Le Roux F, Goubet A, Thompson FL, Faury N, Gay M et al (2005) Vibrio gigantis sp. nov., isolated from the haemolymph of cultured oysters (Crassostrea gigas). Int J Syst Evol Microbiol 55:2251–2255
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2251-2255
-
-
Le Roux, F.1
Goubet, A.2
Thompson, F.L.3
Faury, N.4
Gay, M.5
-
29
-
-
85029587018
-
Vibrio palustris sp. nov. and Vibrio spartinae sp. nov., two novel members of the Gazogenes clade, isolated from salt-marsh plants (Arthrocnemum macrostachyum and Spartina maritima)
-
PID: 28857026
-
Lucena T, Arahal DR, Ruvira MA, Navarro-Torre S, Mesa J et al (2017a) Vibrio palustris sp. nov. and Vibrio spartinae sp. nov., two novel members of the Gazogenes clade, isolated from salt-marsh plants (Arthrocnemum macrostachyum and Spartina maritima). Int J Syst Evol Microbiol 67:3506–3512
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 3506-3512
-
-
Lucena, T.1
Arahal, D.R.2
Ruvira, M.A.3
Navarro-Torre, S.4
Mesa, J.5
-
30
-
-
85021888033
-
Whole genome sequences reveal Vibrio hemicentroti Kim et al. 2013 as a later heterotypic synonym of Vibrio splendidus (Beijerinck 1900) Baumann et al. 1981
-
PID: 28150577
-
Lucena T, Macián MC, Arahal DR, Rodrigo-Torres L et al (2017b) Whole genome sequences reveal Vibrio hemicentroti Kim et al. 2013 as a later heterotypic synonym of Vibrio splendidus (Beijerinck 1900) Baumann et al. 1981. Int J Syst Evol Microbiol 67:1669–1671
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 1669-1671
-
-
Lucena, T.1
Macián, M.C.2
Arahal, D.R.3
Rodrigo-Torres, L.4
-
31
-
-
84897606336
-
Vibrio diversity and dynamics in the Monterey Bay upwelling region
-
PID: 24575086
-
Mansergh S, Zehr JP (2014) Vibrio diversity and dynamics in the Monterey Bay upwelling region. Front Microbiol 5:48
-
(2014)
Front Microbiol
, vol.5
, pp. 48
-
-
Mansergh, S.1
Zehr, J.P.2
-
32
-
-
77957243284
-
RDP3: a flexible and fast computer program for analyzing recombination
-
PID: 20798170
-
Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462–2463
-
(2010)
Bioinformatics
, vol.26
, pp. 2462-2463
-
-
Martin, D.P.1
Lemey, P.2
Lott, M.3
Moulton, V.4
Posada, D.5
Lefeuvre, P.6
-
33
-
-
84874011652
-
Genome sequence-based species delimitation with confidence intervals and improved distance functions
-
Meier-Kolthoff JP, Auch AF, Klenk HP, Göker M (2013) Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinform 14:60
-
(2013)
BMC Bioinform
, vol.14
, pp. 60
-
-
Meier-Kolthoff, J.P.1
Auch, A.F.2
Klenk, H.P.3
Göker, M.4
-
34
-
-
79954466817
-
Release LTPs104 of the all-species living tree
-
PID: 21497273
-
Muñoz R, Yarza P, Ludwig W, Euzeby J, Amann R et al (2011) Release LTPs104 of the all-species living tree. Syst Appl Microbiol 34:169–170
-
(2011)
Syst Appl Microbiol
, vol.34
, pp. 169-170
-
-
Muñoz, R.1
Yarza, P.2
Ludwig, W.3
Euzeby, J.4
Amann, R.5
-
35
-
-
85007165358
-
Vibrio injenensis sp. nov., isolated from human clinical specimens
-
PID: 28012139
-
Paek J, Shin JH, Shin Y, Park IS, Kim H et al (2017) Vibrio injenensis sp. nov., isolated from human clinical specimens. Antonie Van Leeuwenhoek 110:145–152
-
(2017)
Antonie Van Leeuwenhoek
, vol.110
, pp. 145-152
-
-
Paek, J.1
Shin, J.H.2
Shin, Y.3
Park, I.S.4
Kim, H.5
-
36
-
-
84937040910
-
Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
-
Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, Tyson GW (2014) Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res 25:1043–1055
-
(2014)
Genome Res
, vol.25
, pp. 1043-1055
-
-
Parks, D.H.1
Imelfort, M.2
Skennerton, C.T.3
Hugenholtz, P.4
Tyson, G.W.5
-
37
-
-
76849100045
-
Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes
-
PID: 19648344
-
Pascual J, Macián MC, Arahal DR, Garay E, Pujalte MJ (2010) Multilocus sequence analysis of the central clade of the genus Vibrio by using the 16S rRNA, recA, pyrH, rpoD, gyrB, rctB and toxR genes. Int J Syst Evol Microbiol 60:154–165
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 154-165
-
-
Pascual, J.1
Macián, M.C.2
Arahal, D.R.3
Garay, E.4
Pujalte, M.J.5
-
38
-
-
84969849786
-
An MLSA approach for the taxonomic update of the Splendidus clade, a lineage containing several fish and shellfish pathogenic Vibrio spp
-
Pérez-Cataluña A, Lucena T, Tarazona E, Arahal DR, Macián MC et al (2016) An MLSA approach for the taxonomic update of the Splendidus clade, a lineage containing several fish and shellfish pathogenic Vibrio spp. Syst Appl Microb 39:361–369
-
(2016)
Syst Appl Microb
, vol.39
, pp. 361-369
-
-
Pérez-Cataluña, A.1
Lucena, T.2
Tarazona, E.3
Arahal, D.R.4
Macián, M.C.5
-
39
-
-
38049102891
-
Geobacillus toebii subsp. decanicus subsp. nov., a hydrocarbon-degrading, heavy metal resistant bacterium from hot compost
-
PID: 17116971
-
Poli A, Romano I, Caliendo G, Nicolaus G, Orlando P et al (2006) Geobacillus toebii subsp. decanicus subsp. nov., a hydrocarbon-degrading, heavy metal resistant bacterium from hot compost. J Gen Appl Microbiol 52:223–234
-
(2006)
J Gen Appl Microbiol
, vol.52
, pp. 223-234
-
-
Poli, A.1
Romano, I.2
Caliendo, G.3
Nicolaus, G.4
Orlando, P.5
-
40
-
-
69749126416
-
High level synthesis of levan by a novel Halomonas species growing on defined media
-
Poli A, Kazak H, Gürleyendağ B, Tommonaro G, Pieretti G et al (2009) High level synthesis of levan by a novel Halomonas species growing on defined media. Carbohydr Polym 78:651–657
-
(2009)
Carbohydr Polym
, vol.78
, pp. 651-657
-
-
Poli, A.1
Kazak, H.2
Gürleyendağ, B.3
Tommonaro, G.4
Pieretti, G.5
-
41
-
-
80051681678
-
Geobacillus galactosidasius sp. nov., a new thermophilic galactosidase-producing bacterium isolated from compost
-
Poli A, Laezza G, Gul-Guven R, Orlando P, Nicolaus B (2011) Geobacillus galactosidasius sp. nov., a new thermophilic galactosidase-producing bacterium isolated from compost. Syst Appl Microb 34:419–423
-
(2011)
Syst Appl Microb
, vol.34
, pp. 419-423
-
-
Poli, A.1
Laezza, G.2
Gul-Guven, R.3
Orlando, P.4
Nicolaus, B.5
-
42
-
-
84872458399
-
Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Camalti Saltern Area
-
PID: 22328606
-
Poli A, Nicolaus B, Denizci AA, Yavuzturk B, Kazan D (2013) Halomonas smyrnensis sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium from Camalti Saltern Area. Turkey. Int J Syst Evol Microbiol 63:10–18
-
(2013)
Turkey. Int J Syst Evol Microbiol
, vol.63
, pp. 10-18
-
-
Poli, A.1
Nicolaus, B.2
Denizci, A.A.3
Yavuzturk, B.4
Kazan, D.5
-
43
-
-
84894245923
-
Vibrios in hatchery cultures of the razor clam, Solen marginatus (Pulteney)
-
PID: 23496328
-
Prado S, Dubert J, da Costa F, Martínez-Patiño D, Barja JL (2014) Vibrios in hatchery cultures of the razor clam, Solen marginatus (Pulteney). J Fish Dis 37:209–217
-
(2014)
J Fish Dis
, vol.37
, pp. 209-217
-
-
Prado, S.1
Dubert, J.2
da Costa, F.3
Martínez-Patiño, D.4
Barja, J.L.5
-
44
-
-
84864134721
-
SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes
-
PID: 22556368
-
Pruesse E, Peplies J, Glöckner FO (2012) SINA: accurate high-throughput multiple sequence alignment of ribosomal RNA genes. Bioinformatics 28:1823–1829
-
(2012)
Bioinformatics
, vol.28
, pp. 1823-1829
-
-
Pruesse, E.1
Peplies, J.2
Glöckner, F.O.3
-
45
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
PID: 19855009
-
Richter M, Rosselló-Móra R (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci USA 106:19126–19131
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
46
-
-
84962177747
-
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
-
PID: 26576653
-
Richter M, Rosselló-Móra R, Glöckner FO, Peplies J (2016) JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison. Bioinformatics 32:929–931
-
(2016)
Bioinformatics
, vol.32
, pp. 929-931
-
-
Richter, M.1
Rosselló-Móra, R.2
Glöckner, F.O.3
Peplies, J.4
-
47
-
-
0018409915
-
Generic assignments, strain histories and properties of pure cultures of cyanobacteria
-
Rippka R, Deruelles J, Waterbury JB (1979) Generic assignments, strain histories and properties of pure cultures of cyanobacteria. Microbiology 111:1–61
-
(1979)
Microbiology
, vol.111
, pp. 1-61
-
-
Rippka, R.1
Deruelles, J.2
Waterbury, J.B.3
-
48
-
-
84911415056
-
Characterization and pathogenicity of Vibrio splendidus strains associated with massive mortalities of commercial hatchery-reared larvae of scallop Argopecten purpuratus (Lamarck, 1819)
-
PID: 25450196
-
Rojas R, Miranda CD, Opazo R, Romero J (2015) Characterization and pathogenicity of Vibrio splendidus strains associated with massive mortalities of commercial hatchery-reared larvae of scallop Argopecten purpuratus (Lamarck, 1819). J Invertebr Pathol 124:61–69
-
(2015)
J Invertebr Pathol
, vol.124
, pp. 61-69
-
-
Rojas, R.1
Miranda, C.D.2
Opazo, R.3
Romero, J.4
-
49
-
-
77951768816
-
Thermoanaerobacterium thermostercus sp. nov., a new anaerobic thermophilic hydrogen-producing bacterium from buffalo-dung
-
PID: 20155430
-
Romano I, Di Pasquale L, Orlando P, Lama L, d’Ippolito G et al (2010) Thermoanaerobacterium thermostercus sp. nov., a new anaerobic thermophilic hydrogen-producing bacterium from buffalo-dung. Extremophiles 14:233–240
-
(2010)
Extremophiles
, vol.14
, pp. 233-240
-
-
Romano, I.1
Di Pasquale, L.2
Orlando, P.3
Lama, L.4
d’Ippolito, G.5
-
50
-
-
35648960851
-
Inferring the evolutionary history of vibrios by means of multilocus sequence analysis
-
PID: 17704223
-
Sawabe T, Kita-Tsukamoto K, Thompson FL (2007) Inferring the evolutionary history of vibrios by means of multilocus sequence analysis. J Bacteriol 189:7932–7936
-
(2007)
J Bacteriol
, vol.189
, pp. 7932-7936
-
-
Sawabe, T.1
Kita-Tsukamoto, K.2
Thompson, F.L.3
-
51
-
-
84892159415
-
Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov
-
Sawabe T, Ogura J, Matsumura Y, Feng G, Amin AKMR et al (2013) Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front Microbiol 4:1–14
-
(2013)
Front Microbiol
, vol.4
, pp. 1-14
-
-
Sawabe, T.1
Ogura, J.2
Matsumura, Y.3
Feng, G.4
Amin, A.K.M.R.5
-
52
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
PID: 24642063
-
Seemann T (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics 30:2068–2069
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
53
-
-
84893771596
-
Characterization of vibrios diversity in the mucus of the polychaete Myxicola infundibulum (Annellida, Polychaeta)
-
PID: 24194098
-
Stabili L, Giangrande A, Pizzolante G, Caruso G, Alifano P (2014) Characterization of vibrios diversity in the mucus of the polychaete Myxicola infundibulum (Annellida, Polychaeta). Microb Ecol 67:186–194
-
(2014)
Microb Ecol
, vol.67
, pp. 186-194
-
-
Stabili, L.1
Giangrande, A.2
Pizzolante, G.3
Caruso, G.4
Alifano, P.5
-
54
-
-
0028028182
-
Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Evol Microbiol 44:846–849
-
(1994)
Int J Syst Evol Microbiol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
56
-
-
84878163657
-
Diversity of Vibrio spp. isolated at ambient environmental temperature in the Eastern English Channel as determined by pyrH sequencing
-
PID: 23473469
-
Tall A, Hervio-Heat D, Teillon A, Boisset-Helbert C, Delesmont R (2013) Diversity of Vibrio spp. isolated at ambient environmental temperature in the Eastern English Channel as determined by pyrH sequencing. J Appl Microbiol 114:1713–1724
-
(2013)
J Appl Microbiol
, vol.114
, pp. 1713-1724
-
-
Tall, A.1
Hervio-Heat, D.2
Teillon, A.3
Boisset-Helbert, C.4
Delesmont, R.5
-
57
-
-
0141725829
-
Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment
-
PID: 13130038
-
Thompson FL, Thompson CC, Hoste B, Vandemeulebroecke K, Gullian M et al (2003a) Vibrio fortis sp. nov. and Vibrio hepatarius sp. nov., isolated from aquatic animals and the marine environment. Int J Syst Evol Microbiol 53:1495–1501
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 1495-1501
-
-
Thompson, F.L.1
Thompson, C.C.2
Hoste, B.3
Vandemeulebroecke, K.4
Gullian, M.5
-
58
-
-
0038209146
-
Vibrio kanaloae sp. nov., Vibrio pomeroyi sp. nov. and Vibrio chagasii sp. nov., from sea water and marine animals
-
PID: 12807197
-
Thompson FL, Thompson CC, Li Y, Gomez-Gil B, Vandenberghe J et al (2003b) Vibrio kanaloae sp. nov., Vibrio pomeroyi sp. nov. and Vibrio chagasii sp. nov., from sea water and marine animals. Int J Syst Evol Microbiol 53:753–759
-
(2003)
Int J Syst Evol Microbiol
, vol.53
, pp. 753-759
-
-
Thompson, F.L.1
Thompson, C.C.2
Li, Y.3
Gomez-Gil, B.4
Vandenberghe, J.5
-
59
-
-
25144436280
-
Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis
-
PID: 16151093
-
Thompson FL, Gevers D, Thompson CC, Dawyndt P, Naser S et al (2005) Phylogeny and molecular identification of vibrios on the basis of multilocus sequence analysis. Appl Environ Microbiol 71:5107–5115
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 5107-5115
-
-
Thompson, F.L.1
Gevers, D.2
Thompson, C.C.3
Dawyndt, P.4
Naser, S.5
-
60
-
-
0031977413
-
Effect of temperature on adhesion of Vibrio strain AK-1 to Oculina patagonica and on coral bleaching
-
PID: 16349542
-
Toren A, Landau L, Kushmaro A, Loya Y, Rosenberg E (1998) Effect of temperature on adhesion of Vibrio strain AK-1 to Oculina patagonica and on coral bleaching. Appl Environ Microbiol 64:1379–1384
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 1379-1384
-
-
Toren, A.1
Landau, L.2
Kushmaro, A.3
Loya, Y.4
Rosenberg, E.5
-
61
-
-
84926387634
-
Aquatic ecology of the oyster pathogens Vibrio splendidus and Vibrio aestuarianus
-
PID: 24725454
-
Vezzulli L, Pezzati E, Stauder M, Stagnaro L, Venier P (2014) Aquatic ecology of the oyster pathogens Vibrio splendidus and Vibrio aestuarianus. Environ Microbiol 17:1065–1080
-
(2014)
Environ Microbiol
, vol.17
, pp. 1065-1080
-
-
Vezzulli, L.1
Pezzati, E.2
Stauder, M.3
Stagnaro, L.4
Venier, P.5
-
62
-
-
79952406525
-
Vibrio marisflavi sp. nov., isolated from seawater
-
PID: 20382785
-
Wang H, Liu J, Wang Y, Zhang XH (2011) Vibrio marisflavi sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61:568–573
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 568-573
-
-
Wang, H.1
Liu, J.2
Wang, Y.3
Zhang, X.H.4
-
63
-
-
84876154165
-
Isolation and characterization of bacteria associated with a syndrome disease of sea urchin Strongylocentrotus intermedius in North China
-
Wang Y, Feng N, Li Q, Ding J, Zhan Y et al (2013) Isolation and characterization of bacteria associated with a syndrome disease of sea urchin Strongylocentrotus intermedius in North China. Aquac Res 44:691–700
-
(2013)
Aquac Res
, vol.44
, pp. 691-700
-
-
Wang, Y.1
Feng, N.2
Li, Q.3
Ding, J.4
Zhan, Y.5
-
64
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Evol Microbiol 37:463–464
-
(1987)
Int J Syst Evol Microbiol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
-
65
-
-
85037715645
-
Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies
-
PID: 28005526
-
Yoon SH, Ha SM, Kwon S, Lim J, Kim Y et al (2017a) Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int J Syst Evol Microbiol 67:1613–1617
-
(2017)
Int J Syst Evol Microbiol
, vol.67
, pp. 1613-1617
-
-
Yoon, S.H.1
Ha, S.M.2
Kwon, S.3
Lim, J.4
Kim, Y.5
-
66
-
-
85012917775
-
A large-scale evaluation of algorithms to calculate average nucleotide identity
-
PID: 28204908
-
Yoon SH, Ha SM, Lim J, Kwon S, Chun J (2017b) A large-scale evaluation of algorithms to calculate average nucleotide identity. Antonie Van Leeuwenhoek 110:1281–1286
-
(2017)
Antonie Van Leeuwenhoek
, vol.110
, pp. 1281-1286
-
-
Yoon, S.H.1
Ha, S.M.2
Lim, J.3
Kwon, S.4
Chun, J.5
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