메뉴 건너뛰기




Volumn 57, Issue 12, 2017, Pages 3086-3093

Group Additivity in Ligand Binding Affinity: An Alternative Approach to Ligand Efficiency

Author keywords

[No Author keywords available]

Indexed keywords

ATOMS; BINDING ENERGY; EFFICIENCY; PROTEINS;

EID: 85039993856     PISSN: 15499596     EISSN: 1549960X     Source Type: Journal    
DOI: 10.1021/acs.jcim.7b00381     Document Type: Article
Times cited : (24)

References (31)
  • 3
    • 43049088827 scopus 로고    scopus 로고
    • Ligand Binding Efficiency: Trends, Physical Basis, and Implications
    • Reynolds, C. H.; Tounge, B. A.; Bembenek, S. D. Ligand Binding Efficiency: Trends, Physical Basis, and Implications J. Med. Chem. 2008, 51, 2432-2438 10.1021/jm701255b
    • (2008) J. Med. Chem. , vol.51 , pp. 2432-2438
    • Reynolds, C.H.1    Tounge, B.A.2    Bembenek, S.D.3
  • 6
    • 77957237209 scopus 로고    scopus 로고
    • Enthalpic Efficiency of Ligand Binding
    • Ferenczy, G. G.; Keserü, G. M. Enthalpic Efficiency of Ligand Binding J. Chem. Inf. Model. 2010, 50, 1536-1541 10.1021/ci100125a
    • (2010) J. Chem. Inf. Model. , vol.50 , pp. 1536-1541
    • Ferenczy, G.G.1    Keserü, G.M.2
  • 7
    • 1942453243 scopus 로고    scopus 로고
    • Ligand Efficiency: A Useful Metric for Lead Selection
    • Hopkins, A. L.; Groom, C. R.; Alex, A. Ligand Efficiency: A Useful Metric for Lead Selection Drug Discovery Today 2004, 9, 430-431 10.1016/S1359-6446(04)03069-7
    • (2004) Drug Discovery Today , vol.9 , pp. 430-431
    • Hopkins, A.L.1    Groom, C.R.2    Alex, A.3
  • 8
    • 0021745755 scopus 로고
    • Functional Group Contributions to Drug-Receptor Interactions
    • Andrews, P. R.; Craik, D. J.; Martin, J. L. Functional Group Contributions to Drug-Receptor Interactions J. Med. Chem. 1984, 27, 1648-1657 10.1021/jm00378a021
    • (1984) J. Med. Chem. , vol.27 , pp. 1648-1657
    • Andrews, P.R.1    Craik, D.J.2    Martin, J.L.3
  • 9
    • 84964692636 scopus 로고    scopus 로고
    • Improving Drug Design: An Update on Recent Applications of Efficiency Metrics, Strategies for Replacing Problematic Elements, and Compounds in Nontraditional Drug Space
    • Meanwell, N. A. Improving Drug Design: An Update on Recent Applications of Efficiency Metrics, Strategies for Replacing Problematic Elements, and Compounds in Nontraditional Drug Space Chem. Res. Toxicol. 2016, 29, 564-616 10.1021/acs.chemrestox.6b00043
    • (2016) Chem. Res. Toxicol. , vol.29 , pp. 564-616
    • Meanwell, N.A.1
  • 10
    • 70349731747 scopus 로고    scopus 로고
    • A Thermodynamic Approach to the Affinity Optimization of Drug Candidates
    • Freire, E. A Thermodynamic Approach to the Affinity Optimization of Drug Candidates Chem. Biol. Drug Des. 2009, 74, 468-472 10.1111/j.1747-0285.2009.00880.x
    • (2009) Chem. Biol. Drug Des. , vol.74 , pp. 468-472
    • Freire, E.1
  • 11
    • 74149083849 scopus 로고    scopus 로고
    • Adding Calorimetric Data to Decision Making in Lead Discovery: A Hot Tip
    • Ladbury, J. E.; Klebe, G.; Freire, E. Adding Calorimetric Data to Decision Making in Lead Discovery: A Hot Tip Nat. Rev. Drug Discovery 2010, 9, 23-27 10.1038/nrd3054
    • (2010) Nat. Rev. Drug Discovery , vol.9 , pp. 23-27
    • Ladbury, J.E.1    Klebe, G.2    Freire, E.3
  • 12
    • 79959243001 scopus 로고    scopus 로고
    • Thermodynamics of Ligand Binding and Efficiency
    • Reynolds, C. H.; Holloway, M. K. Thermodynamics of Ligand Binding and Efficiency ACS Med. Chem. Lett. 2011, 2, 433-437 10.1021/ml200010k
    • (2011) ACS Med. Chem. Lett. , vol.2 , pp. 433-437
    • Reynolds, C.H.1    Holloway, M.K.2
  • 13
    • 33846108633 scopus 로고    scopus 로고
    • BindingDB: A Web-Accessible Database of Experimentally Determined Protein-Ligand Binding Affinities
    • Liu, T.; Lin, Y.; Wen, X.; Jorissen, R. N.; Gilson, M. K. BindingDB: A Web-Accessible Database of Experimentally Determined Protein-Ligand Binding Affinities Nucleic Acids Res. 2007, 35, D198-D201 10.1093/nar/gkl999
    • (2007) Nucleic Acids Res. , vol.35 , pp. D198-D201
    • Liu, T.1    Lin, Y.2    Wen, X.3    Jorissen, R.N.4    Gilson, M.K.5
  • 14
    • 84855757480 scopus 로고    scopus 로고
    • Chemical Computing Group Inc. Montreal, QC
    • Molecular Operating Environment (MOE); Chemical Computing Group Inc.: Montreal, QC, 2017.
    • (2017) Molecular Operating Environment (MOE)
  • 15
    • 85040001087 scopus 로고    scopus 로고
    • Dotmatics: Bishop's Stortford, U.K
    • VORTEX; Dotmatics: Bishop's Stortford, U.K., 2017.
    • (2017) VORTEX
  • 16
    • 0542443644 scopus 로고
    • A Reëxamination of the Hammett Equation
    • Jaffé, H. H. A Reëxamination of the Hammett Equation Chem. Rev. 1953, 53, 191-261 10.1021/cr60165a003
    • (1953) Chem. Rev. , vol.53 , pp. 191-261
    • Jaffé, H.H.1
  • 17
    • 0242677271 scopus 로고
    • Quantitative Approach to Biochemical Structure-Activity Relationships
    • Hansch, C. Quantitative Approach to Biochemical Structure-Activity Relationships Acc. Chem. Res. 1969, 2, 232-239 10.1021/ar50020a002
    • (1969) Acc. Chem. Res. , vol.2 , pp. 232-239
    • Hansch, C.1
  • 18
    • 84986468124 scopus 로고
    • Group Equivalents for Converting Ab Initio Energies to Enthalpies of Formation
    • Wiberg, K. B. Group Equivalents for Converting Ab Initio Energies to Enthalpies of Formation J. Comput. Chem. 1984, 5, 197-199 10.1002/jcc.540050212
    • (1984) J. Comput. Chem. , vol.5 , pp. 197-199
    • Wiberg, K.B.1
  • 20
    • 0019407381 scopus 로고
    • On the Attribution and Additivity of Binding Energies
    • Jencks, W. P. On the Attribution and Additivity of Binding Energies Proc. Natl. Acad. Sci. U. S. A. 1981, 78, 4046-4050 10.1073/pnas.78.7.4046
    • (1981) Proc. Natl. Acad. Sci. U. S. A. , vol.78 , pp. 4046-4050
    • Jencks, W.P.1
  • 21
    • 34447109128 scopus 로고    scopus 로고
    • The Role of Molecular Size in Ligand Efficiency
    • Reynolds, C. H.; Bembenek, S. D.; Tounge, B. A. The Role of Molecular Size in Ligand Efficiency Bioorg. Med. Chem. Lett. 2007, 17, 4258-4261 10.1016/j.bmcl.2007.05.038
    • (2007) Bioorg. Med. Chem. Lett. , vol.17 , pp. 4258-4261
    • Reynolds, C.H.1    Bembenek, S.D.2    Tounge, B.A.3
  • 22
    • 3042732126 scopus 로고    scopus 로고
    • Structural Details on the Binding of Antihypertensive Drugs Captopril and Enalaprilat to Human Testicular Angiotensin I-Converting Enzyme
    • Natesh, R.; Schwager, S. L. U.; Evans, H. R.; Sturrock, E. D.; Acharya, K. R. Structural Details on the Binding of Antihypertensive Drugs Captopril and Enalaprilat to Human Testicular Angiotensin I-Converting Enzyme Biochemistry 2004, 43, 8718-8724 10.1021/bi049480n
    • (2004) Biochemistry , vol.43 , pp. 8718-8724
    • Natesh, R.1    Schwager, S.L.U.2    Evans, H.R.3    Sturrock, E.D.4    Acharya, K.R.5
  • 23
    • 84966283995 scopus 로고    scopus 로고
    • Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172
    • Soumana, D. I.; Kurt Yilmaz, N.; Prachanronarong, K. L.; Aydin, C.; Ali, A.; Schiffer, C. A. Structural and Thermodynamic Effects of Macrocyclization in HCV NS3/4A Inhibitor MK-5172 ACS Chem. Biol. 2016, 11, 900-909 10.1021/acschembio.5b00647
    • (2016) ACS Chem. Biol. , vol.11 , pp. 900-909
    • Soumana, D.I.1    Kurt Yilmaz, N.2    Prachanronarong, K.L.3    Aydin, C.4    Ali, A.5    Schiffer, C.A.6
  • 24
    • 38149094270 scopus 로고    scopus 로고
    • Thiol-Based Angiotensin-Converting Enzyme 2 Inhibitors: P 1 Modifications for the Exploration of the S 1 Subsite
    • Deaton, D. N.; Gao, E. N.; Graham, K. P.; Gross, J. W.; Miller, A. B.; Strelow, J. M. Thiol-Based Angiotensin-Converting Enzyme 2 Inhibitors: P 1 Modifications for the Exploration of the S 1 Subsite Bioorg. Med. Chem. Lett. 2008, 18, 732-737 10.1016/j.bmcl.2007.11.048
    • (2008) Bioorg. Med. Chem. Lett. , vol.18 , pp. 732-737
    • Deaton, D.N.1    Gao, E.N.2    Graham, K.P.3    Gross, J.W.4    Miller, A.B.5    Strelow, J.M.6
  • 27
    • 33845364148 scopus 로고    scopus 로고
    • Fragment-Based Drug Design: How Big Is Too Big?
    • Hajduk, P. J. Fragment-Based Drug Design: How Big Is Too Big? J. Med. Chem. 2006, 49, 6972-6976 10.1021/jm060511h
    • (2006) J. Med. Chem. , vol.49 , pp. 6972-6976
    • Hajduk, P.J.1
  • 28
    • 77950022453 scopus 로고    scopus 로고
    • Non-Additivity of Functional Group Contributions in Protein-Ligand Binding: A Comprehensive Study by Crystallography and Isothermal Titration Calorimetry
    • Baum, B.; Muley, L.; Smolinski, M.; Heine, A.; Hangauer, D.; Klebe, G. Non-Additivity of Functional Group Contributions in Protein-Ligand Binding: A Comprehensive Study by Crystallography and Isothermal Titration Calorimetry J. Mol. Biol. 2010, 397, 1042-1054 10.1016/j.jmb.2010.02.007
    • (2010) J. Mol. Biol. , vol.397 , pp. 1042-1054
    • Baum, B.1    Muley, L.2    Smolinski, M.3    Heine, A.4    Hangauer, D.5    Klebe, G.6
  • 29
    • 0031022887 scopus 로고    scopus 로고
    • Additivity Principles in Biochemistry
    • Dill, K. A. Additivity Principles in Biochemistry J. Biol. Chem. 1997, 272, 701-704 10.1074/jbc.272.2.701
    • (1997) J. Biol. Chem. , vol.272 , pp. 701-704
    • Dill, K.A.1
  • 30
    • 33645923414 scopus 로고    scopus 로고
    • Linear Interaction Energy Models for B-Secretase (BACE) Inhibitors: Role of van der Waals, Electrostatic, and Continuum-Solvation Terms
    • Tounge, B. A.; Rajamani, R.; Baxter, E. W.; Reitz, A. B.; Reynolds, C. H. Linear Interaction Energy Models for B-Secretase (BACE) Inhibitors: Role of van Der Waals, Electrostatic, and Continuum-Solvation Terms J. Mol. Graphics Modell. 2006, 24, 475-484 10.1016/j.jmgm.2005.10.002
    • (2006) J. Mol. Graphics Modell. , vol.24 , pp. 475-484
    • Tounge, B.A.1    Rajamani, R.2    Baxter, E.W.3    Reitz, A.B.4    Reynolds, C.H.5
  • 31
    • 0031226772 scopus 로고    scopus 로고
    • Empirical Scoring Functions: I. the Development of a Fast Empirical Scoring Function to Estimate the Binding Affinity of Ligands in Receptor Complexes
    • Eldridge, M. D.; Mee, R. P.; Paolini, G. V.; Auton, T. R.; Murray, C. W. Empirical Scoring Functions: I. The Development of a Fast Empirical Scoring Function to Estimate the Binding Affinity of Ligands in Receptor Complexes J. Comput.-Aided Mol. Des. 1997, 11, 425-445 10.1023/A:1007996124545
    • (1997) J. Comput.-Aided Mol. Des. , vol.11 , pp. 425-445
    • Eldridge, M.D.1    Mee, R.P.2    Paolini, G.V.3    Auton, T.R.4    Murray, C.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.