메뉴 건너뛰기




Volumn 7, Issue , 2017, Pages

Identifying tagging SNPs for African specific genetic variation from the African Diaspora Genome

(110)  Johnston, Henry Richard a   Hu, Yi Juan a   Gao, Jingjing b   O'Connor, Timothy D c   Abecasis, Gonçalo R d   Wojcik, Genevieve L e   Gignoux, Christopher R e   Gourraud, Pierre Antoine f   Lizee, Antoine f   Hansen, Mark g   Genuario, Rob g   Bullis, Dave g   Lawley, Cindy g   Kenny, Eimear E e,h   Bustamante, Carlos e   Beaty, Terri H i   Mathias, Rasika A i   Barnes, Kathleen C i   Qin, Zhaohui S a   Boorgula, Meher Preethi j   more..


Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AFRICAN; DOCUMENTATION; FEMALE; GENETIC VARIABILITY; GENETIC VARIATION; GENOME-WIDE ASSOCIATION STUDY; HUMAN; MAJOR CLINICAL STUDY; MALE; SCIENTIST; SEASHORE; SINGLE NUCLEOTIDE POLYMORPHISM; WESTERN HEMISPHERE; BLACK PERSON; DNA MICROARRAY; GENETICS; GENOMICS; GENOTYPE; HUMAN GENOME;

EID: 85038807070     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep46398     Document Type: Article
Times cited : (27)

References (16)
  • 1
    • 84923186799 scopus 로고    scopus 로고
    • The African genome variation project shapes medical genetics in Africa
    • Gurdasani, D. et al. The African Genome Variation Project shapes medical genetics in Africa. Nature, 1-16, doi: papers2://publication/doi/10.1038/nature13997 (2014).
    • (2014) Nature , pp. 1-16
    • Gurdasani, D.1
  • 3
    • 46249126356 scopus 로고    scopus 로고
    • Estimating coverage and power for genetic association studies using near-complete variation data
    • Bhangale, T. R., Rieder, M. J. & Nickerson, D. A. Estimating coverage and power for genetic association studies using near-complete variation data. Nat Genet 40, 841-843, doi: papers2://publication/doi/10.1038/ng.180 (2008).
    • (2008) Nat Genet , vol.40 , pp. 841-843
    • Bhangale, T.R.1    Rieder, M.J.2    Nickerson, D.A.3
  • 4
    • 84991369066 scopus 로고    scopus 로고
    • A continuum of admixture in the western hemisphere revealed by the African diaspora genome
    • Mathias, R. A. et al. A continuum of admixture in the Western Hemisphere revealed by the African Diaspora genome. Nature Communications 7, 1-10, doi: papers2://publication/doi/10.1038/ncomms12522 (2016).
    • (2016) Nature Communications , vol.7 , pp. 1-10
    • Mathias, R.A.1
  • 6
    • 84883162851 scopus 로고    scopus 로고
    • Comparison of the performance of two commercial genome-wide association study genotyping platforms in han Chinese samples
    • Jiang, L., Willner, D., Danoy, P., Xu, H. & Brown, M. A. Comparison of the performance of two commercial genome-wide association study genotyping platforms in Han Chinese samples. G3 (Bethesda) 3, 23-29, doi: papers2://publication/doi/10.1534/g3.112.004069 (2013).
    • (2013) G3 (Bethesda) , vol.3 , pp. 23-29
    • Jiang, L.1    Willner, D.2    Danoy, P.3    Xu, H.4    Brown, M.A.5
  • 7
    • 42649111672 scopus 로고    scopus 로고
    • Evaluation of coverage variation of SNP chips for genome-wide association studies
    • Li, M., Li, C. & Guan, W. Evaluation of coverage variation of SNP chips for genome-wide association studies. Eur J Hum Genet 16, 635-643, doi: papers2://publication/doi/10.1038/sj.ejhg.5202007 (2008).
    • (2008) Eur J Hum Genet , vol.16 , pp. 635-643
    • Li, M.1    Li, C.2    Guan, W.3
  • 8
    • 60549116311 scopus 로고    scopus 로고
    • A comprehensive evaluation of SNP genotype imputation
    • Nothnagel, M., Ellinghaus, D., Schreiber, S., Krawczak, M. & Franke, A. A comprehensive evaluation of SNP genotype imputation. Hum. Genet. 125, 163-171, doi: papers2://publication/doi/10.1007/s00439-008-0606-5 (2008).
    • (2008) Hum. Genet. , vol.125 , pp. 163-171
    • Nothnagel, M.1    Ellinghaus, D.2    Schreiber, S.3    Krawczak, M.4    Franke, A.5
  • 9
    • 84925137145 scopus 로고    scopus 로고
    • Population genetics identifies challenges in analyzing rare variants
    • Johnston, H. R., Hu, Y. & Cutler, D. J. Population Genetics Identifies Challenges in Analyzing Rare Variants. Genet. Epidemiol. 39, 145-148, doi: 10.1002/gepi.21881 (2015).
    • (2015) Genet. Epidemiol. , vol.39 , pp. 145-148
    • Johnston, H.R.1    Hu, Y.2    Cutler, D.J.3
  • 10
    • 78649508578 scopus 로고    scopus 로고
    • Mach: Using sequence and genotype data to estimate haplotypes and unobserved genotypes
    • Li, Y., and Willer, C. J., Ding, J., Scheet, P. & Abecasis, G. R. MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet. Epidemiol. 34, 816-834, doi: papers2://publication/doi/10.1002/gepi.20533 (2010).
    • (2010) Genet. Epidemiol. , vol.34 , pp. 816-834
    • Li, Y.1    Willer, C.J.2    Ding, J.3    Scheet, P.4    Abecasis, G.R.5
  • 11
    • 84864417548 scopus 로고    scopus 로고
    • Fast and accurate genotype imputation in genome-wide association studies through pre-phasing
    • Howie, B., Fuchsberger, C, Stephens, M., Marchini, J. & Abecasis, G. R. Fast and accurate genotype imputation in genome-wide association studies through pre-phasing. Nature Publishing Group 44, 955-959, doi: papers2://publication/doi/10.1038/ng.2354 (2012).
    • (2012) Nature Publishing Group , vol.44 , pp. 955-959
    • Howie, B.1    Fuchsberger, C.2    Stephens, M.3    Marchini, J.4    Abecasis, G.R.5
  • 12
    • 27244437783 scopus 로고    scopus 로고
    • Handling marker-marker linkage disequilibrium: Pedigree analysis with clustered markers
    • Abecasis, G. R. & Wigginton, J. E. Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers. Am. J. Hum. Genet. 77, 754-767, doi: papers2://publication/doi/10.1086/497345 (2005).
    • (2005) Am. J. Hum. Genet. , vol.77 , pp. 754-767
    • Abecasis, G.R.1    Wigginton, J.E.2
  • 13
    • 32144431911 scopus 로고    scopus 로고
    • An eficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria
    • Qin, Z. S., Gopalakrishnan, S. & Abecasis, G. R. An eficient comprehensive search algorithm for tagSNP selection using linkage disequilibrium criteria. Bioinformatics 22, 220-225, doi: papers2://publication/doi/10.1093/bioinformatics/bti762 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 220-225
    • Qin, Z.S.1    Gopalakrishnan, S.2    Abecasis, G.R.3
  • 14
    • 84897449354 scopus 로고    scopus 로고
    • HIBAG[mdash]HLA genotype imputation with attribute bagging
    • Zheng, X. et al. HIBAG[mdash]HLA genotype imputation with attribute bagging. Pharmacogenomics J 14, 192-200, doi: 10.1038/tpj.2013.18 (2014).
    • (2014) Pharmacogenomics J , vol.14 , pp. 192-200
    • Zheng, X.1
  • 15
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079, doi: papers2://publication/doi/10.1093/bioinformatics/btp352 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 16
    • 79960405019 scopus 로고    scopus 로고
    • The variant call format and VCFtools
    • Danecek, P. et al. The variant call format and VCFtools. Bioinformatics 27, 2156-2158, doi: papers2://publication/doi/10.1093/bioinformatics/btr330 (2011).
    • (2011) Bioinformatics , vol.27 , pp. 2156-2158
    • Danecek, P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.