Correction to: Early gut mycobiota and mother-offspring transfer (Microbiome, (2017), 5, 1, (107), 10.1186/s40168-017-0319-x);Early gut mycobiota and mother-offspring transfer

Microbiome

Volumn 5, Issue 1, 2017, Pages

  Schei, Kasper ^a   Avershina, Ekaterina ^b   Øien, Torbjørn ^a   Rudi, Knut ^b   Follestad, Turid ^a   Salamati, Saideh ^c   Ødegård, Rønnaug Astri ^a,c  

^a NORWEGIAN UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Norway)

^b NORWEGIAN UNIVERSITY OF LIFE SCIENCES   (Norway)

^c TRONDHEIM UNIVERSITY HOSPITAL   (Norway)

Author keywords

Fungi; Gut microbiota; Infant; Infant health; Mycobiota; Newborn; Probiotics

Indexed keywords

PROBIOTIC AGENT; RIBOSOMAL SPACER DNA; RNA 16S; RNA 18S;

ADULT; BREAST FEEDING; CLASSIFICATION; COHORT ANALYSIS; CONTROLLED STUDY; DEBARYOMYCES; FECES; FEMALE; FUNGUS; GASTROINTESTINAL TRACT; GENETICS; HUMAN; INFANT; INTESTINE FLORA; ISOLATION AND PURIFICATION; MALE; MICROBIOLOGY; MOTHER; MYCOBIOME; NEWBORN; PREGNANCY; PRESCHOOL CHILD; PROSPECTIVE STUDY; RANDOMIZED CONTROLLED TRIAL; SACCHAROMYCES CEREVISIAE; TIME FACTOR;

ADULT; BREAST FEEDING; CHILD, PRESCHOOL; COHORT STUDIES; DEBAROMYCES; DNA, RIBOSOMAL SPACER; FECES; FEMALE; FUNGI; GASTROINTESTINAL MICROBIOME; GASTROINTESTINAL TRACT; HUMANS; INFANT; INFANT, NEWBORN; MALE; MOTHERS; MYCOBIOME; PREGNANCY; PROBIOTICS; PROSPECTIVE STUDIES; RNA, RIBOSOMAL, 16S; RNA, RIBOSOMAL, 18S; SACCHAROMYCES CEREVISIAE; TIME FACTORS;

EID: 85037627948     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-021-01094-x     Document Type: Erratum

References (46)

1. Underhill DM, Iliev ID. The mycobiota: interactions between commensal fungi and the host immune system. Nat Rev Immunol. 2014;14:405–16. DOI: 10.1038/nri3684
2. Gouba N, Drancourt M. Digestive tract mycobiota: a source of infection. Medecine et maladies infectieuses. 2015;45:9–16. DOI: 10.1016/j.medmal.2015.01.007
3. Hamad I, Raoult D, Bittar F. Repertory of eukaryotes (eukaryome) in the human gastrointestinal tract: taxonomy and detection methods. Parasite Immunol. 2016;38:12–36. DOI: 10.1111/pim.12284
4. Huse SM, Ye Y, Zhou Y, Fodor AA. A core human microbiome as viewed through 16S rRNA sequence clusters. PLoS One. 2012;7:e34242. DOI: 10.1371/journal.pone.0034242
5. Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature. 2010;464:59–65. DOI: 10.1038/nature08821
6. Li J, Jia H, Cai X, Zhong H, Feng Q, Sunagawa S, et al. An integrated catalog of reference genes in the human gut microbiome. Nat Biotechnol. 2014;32:834–41. DOI: 10.1038/nbt.2942
7. Hoffmann C, Dollive S, Grunberg S, Chen J, Li H, Wu GD, et al. Archaea and fungi of the human gut microbiome: correlations with diet and bacterial residents. PLoS One. 2013;8:e66019. DOI: 10.1371/journal.pone.0066019
8. Cuskin F, Lowe EC, Temple MJ, Zhu Y, Cameron EA, Pudlo NA, et al. Human gut Bacteroidetes can utilize yeast mannan through a selfish mechanism. Nature. 2015;517:165–9. DOI: 10.1038/nature13995
9. Cui L, Morris A, Ghedin E. The human mycobiome in health and disease. Genome medicine. 2013;5:63. DOI: 10.1186/gm467
10. Rizzetto L, De Filippo C, Cavalieri D. Richness and diversity of mammalian fungal communities shape innate and adaptive immunity in health and disease. Eur J Immunol. 2014;44:3166–81. DOI: 10.1002/eji.201344403
11. Walker AW, Lawley TD. Therapeutic modulation of intestinal dysbiosis. Pharmacol Res. 2013;69:75–86. DOI: 10.1016/j.phrs.2012.09.008
12. Mar Rodriguez M, Perez D, Javier Chaves F, Esteve E, Marin-Garcia P, Xifra G, et al. Obesity changes the human gut mycobiome. Sci Rep. 2015;5:14600. DOI: 10.1038/srep14600
13. Wensveen FM, Valentić S, Šestan M, Turk Wensveen T, Polić B. The “big bang” in obese fat: events initiating obesity-induced adipose tissue inflammation. Eur J Immunol. 2015;45:2446–56. DOI: 10.1002/eji.201545502
14. Sokol H, Leducq V, Aschard H, Pham HP, Jegou S, Landman C, et al. Fungal microbiota dysbiosis in IBD. Gut. 2017;66:1039-48.
15. Ott SJ, Kuhbacher T, Musfeldt M, Rosenstiel P, Hellmig S, Rehman A, et al. Fungi and inflammatory bowel diseases: alterations of composition and diversity. Scand J Gastroenterol. 2008;43:831–41. DOI: 10.1080/00365520801935434
16. Salamati S, Martins C, Kulseng B. Baker’s yeast (Saccharomyces cerevisiae) antigen in obese and normal weight subjects. Clinical obesity. 2015;5:42–7. DOI: 10.1111/cob.12079
17. Rinaldi M, Perricone R, Blank M, Perricone C, Shoenfeld Y. Anti-Saccharomyces cerevisiae autoantibodies in autoimmune diseases: from bread baking to autoimmunity. Clin Rev Allergy Immunol. 2013;45:152–61. DOI: 10.1007/s12016-012-8344-9
18. Strati F, Di Paola M, Stefanini I, Albanese D, Rizzetto L, Lionetti P, et al. Age and gender affect the composition of fungal population of the human gastrointestinal tract. Front Microbiol. 2016;7:1227. DOI: 10.3389/fmicb.2016.01227
19. Bliss JM, Basavegowda KP, Watson WJ, Sheikh AU, Ryan RM. Vertical and horizontal transmission of Candida albicans in very low birth weight infants using DNA fingerprinting techniques. Pediatr Infect Dis J. 2008;27:231–5. DOI: 10.1097/INF.0b013e31815bb69d
20. Suhr MJ, Hallen-Adams HE. The human gut mycobiome: pitfalls and potentials—a mycologist’s perspective. Mycologia. 2015;107:1057–73. DOI: 10.3852/15-147
21. Ward TL, Knights D, Gale CA. Infant fungal communities: current knowledge and research opportunities. BMC Med. 2017;15:30. DOI: 10.1186/s12916-017-0802-z
22. Funkhouser LJ, Bordenstein SR. Mom knows best: the universality of maternal microbial transmission. PLoS Biol. 2013;11:e1001631. DOI: 10.1371/journal.pbio.1001631
23. Stinson LF, Payne MS, Keelan JA. Planting the seed: origins, composition, and postnatal health significance of the fetal gastrointestinal microbiota. Crit Rev Microbiol. 2017;43:352–69. DOI: 10.1080/1040841X.2016.1211088
24. Prince AL, Chu DM, Seferovic MD, Antony KM, Ma J, Aagaard KM. The perinatal microbiome and pregnancy: moving beyond the vaginal microbiome. Cold Spring Harbor Perspect Med. 2015;5
25. Aagaard K, Ma J, Antony KM, Ganu R, Petrosino J, Versalovic J. The placenta harbors a unique microbiome. Sci Transl Med. 2014;6:237ra65. DOI: 10.1126/scitranslmed.3008599
26. Collado MC, Rautava S, Aakko J, Isolauri E, Salminen S. Human gut colonisation may be initiated in utero by distinct microbial communities in the placenta and amniotic fluid. Sci Rep. 2016;6:23129. DOI: 10.1038/srep23129
27. Soderborg TK, Borengasser SJ, Barbour LA, Friedman JE. Microbial transmission from mothers with obesity or diabetes to infants: an innovative opportunity to interrupt a vicious cycle. Diabetologia. 2016;59:895–906. DOI: 10.1007/s00125-016-3880-0
28. Ma J, Prince AL, Bader D, Hu M, Ganu R, Baquero K, et al. High-fat maternal diet during pregnancy persistently alters the offspring microbiome in a primate model. Nat Commun. 2014;5:3889.
29. Mason KL, Erb Downward JR, Mason KD, Falkowski NR, Eaton KA, Kao JY, et al. Candida albicans and bacterial microbiota interactions in the cecum during recolonization following broad-spectrum antibiotic therapy. Infect Immun. 2012;80:3371–80. DOI: 10.1128/IAI.00449-12
30. Huffnagle GB, Noverr MC. The emerging world of the fungal microbiome. Trends Microbiol. 2013;21:334–41. DOI: 10.1016/j.tim.2013.04.002
31. Dollive S, Chen YY, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, et al. Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment. PLoS One. 2013;8:e71806. DOI: 10.1371/journal.pone.0071806
32. Matsubara VH, Bandara HM, Mayer MP, Samaranayake LP. Probiotics as antifungals in mucosal candidiasis. Clin Infect Dis. 2016;62:1143–53. DOI: 10.1093/cid/ciw038
33. Kumar S, Bansal A, Chakrabarti A, Singhi S. Evaluation of efficacy of probiotics in prevention of candida colonization in a PICU—a randomized controlled trial. Crit Care Med. 2013;41:565–72. DOI: 10.1097/CCM.0b013e31826a409c
34. Dotterud CK, Storro O, Johnsen R, Oien T. Probiotics in pregnant women to prevent allergic disease: a randomized, double-blind trial. Br J Dermatol. 2010;163:616–23. DOI: 10.1111/j.1365-2133.2010.09889.x
35. Dotterud CK, Avershina E, Sekelja M, Simpson MR, Rudi K, Storro O, et al. Does maternal perinatal probiotic supplementation alter the intestinal microbiota of mother and child? J Pediatr Gastroenterol Nutr. 2015;61:200–7. DOI: 10.1097/MPG.0000000000000781
36. Tang J, Iliev ID, Brown J, Underhill DM, Funari VA. Mycobiome: approaches to analysis of intestinal fungi. J Immunol Methods. 2015;421:112–21. DOI: 10.1016/j.jim.2015.04.004
37. Edgar RC. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Meth. 2013;10:996–8. DOI: 10.1038/nmeth.2604
38. Magurran AE. Measuring biological diversity. Maldan: Blackwell Pub; 2004.
39. Hibbett DS, Taylor JW. Fungal systematics: is a new age of enlightenment at hand? Nat Rev Microbiol. 2013;11:129–33. DOI: 10.1038/nrmicro2963
40. Breuer U, Harms H. Debaryomyces hansenii—an extremophilic yeast with biotechnological potential. Yeast (Chichester, England). 2006;23:415–37. DOI: 10.1002/yea.1374
41. Mutschlechner W, Karall D, Hartmann C, Streiter B, Baumgartner-Sigl S, Orth-Höller D, et al. Mammary candidiasis: molecular-based detection of Candida species in human milk samples. Eur J Clin Microbiol Infect Dis. 2016:1–5.
42. Arzumanyan VG, Magarshak OO, Semenov BF. Yeast fungi in patients with allergic diseases: species variety and sensitivity to antifungal drugs. Bull Exp Biol Med. 2000;129:601–4. DOI: 10.1007/BF02434889
43. Vaughan-Martini A, Martini A. Chapter 61 - Saccharomyces Meyen ex Reess (1870) A2 - Kurtzman, Cletus P. In: Fell JW, Boekhout T, editors. The yeasts. Fifth ed. London: Elsevier; 2011. p. 733–46. DOI: 10.1016/B978-0-444-52149-1.00061-6
44. Ghannoum MA, Jurevic RJ, Mukherjee PK, Cui F, Sikaroodi M, Naqvi A, et al. Characterization of the oral fungal microbiome (mycobiome) in healthy individuals. PLoS Pathog. 2010;6:e1000713. DOI: 10.1371/journal.ppat.1000713
45. Bäckhed F, Roswall J, Peng Y, Feng Q, Jia H, Kovatcheva-Datchary P, et al. Dynamics and stabilization of the human gut microbiome during the first year of life. Cell Host Microbe. 2015;17:690–703. DOI: 10.1016/j.chom.2015.04.004
46. Furukawa S, Watanabe T, Toyama H, Morinaga Y. Significance of microbial symbiotic coexistence in traditional fermentation. J Biosci Bioeng. 2013;116:533–9. DOI: 10.1016/j.jbiosc.2013.05.017