메뉴 건너뛰기




Volumn 131, Issue 3, 2018, Pages 747-755

Efficiency of multi-trait, indirect, and trait-assisted genomic selection for improvement of biomass sorghum

Author keywords

[No Author keywords available]

Indexed keywords

ECOLOGY; FORECASTING; GENES; MOISTURE; POPULATION STATISTICS;

EID: 85037341095     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-017-3033-y     Document Type: Article
Times cited : (118)

References (44)
  • 1
    • 84891372768 scopus 로고    scopus 로고
    • Field high-throughput phenotyping: the new crop breeding frontier
    • COI: 1:CAS:528:DC%2BC3sXhs1CrtbjL, PID: 24139902
    • Araus JL, Cairns JE (2014) Field high-throughput phenotyping: the new crop breeding frontier. Trends Plant Sci 19(1):52–61. https://doi.org/10.1016/j.tplants.2013.09.008
    • (2014) Trends Plant Sci , vol.19 , Issue.1 , pp. 52-61
    • Araus, J.L.1    Cairns, J.E.2
  • 2
    • 79851497145 scopus 로고    scopus 로고
    • A fast, powerful method for detecting identity by descent
    • COI: 1:CAS:528:DC%2BC3MXhvFKgtLg%3D, PID: 21310274
    • Browning BL, Browning SR (2011) A fast, powerful method for detecting identity by descent. Am J Hum Genet 88(2):173–182. https://doi.org/10.1016/j.ajhg.2011.01.010
    • (2011) Am J Hum Genet , vol.88 , Issue.2 , pp. 173-182
    • Browning, B.L.1    Browning, S.R.2
  • 3
    • 84856866301 scopus 로고    scopus 로고
    • Genomic prediction of breeding values when modeling genotype + environment interaction using pedigree and dense molecular markers
    • Burgueño J, de los Campos G, Weigel K, Crossa J (2012) Genomic prediction of breeding values when modeling genotype + environment interaction using pedigree and dense molecular markers. Crop Sci 52(2):707–719. https://doi.org/10.2135/cropsci2011.06.0299
    • (2012) Crop Sci , vol.52 , Issue.2 , pp. 707-719
    • Burgueño, J.1    de los Campos, G.2    Weigel, K.3    Crossa, J.4
  • 4
    • 84939516482 scopus 로고    scopus 로고
    • Genomewide association for sugar yield in sweet sorghum
    • COI: 1:CAS:528:DC%2BC28XnvVOksro%3D
    • Burks PS, Kaiser CM, Hawkins FM, Brown PJ (2015) Genomewide association for sugar yield in sweet sorghum. Crop Sci 55(5):2138–2148
    • (2015) Crop Sci , vol.55 , Issue.5 , pp. 2138-2148
    • Burks, P.S.1    Kaiser, C.M.2    Hawkins, F.M.3    Brown, P.J.4
  • 6
    • 80455127261 scopus 로고    scopus 로고
    • Accuracy of multi-trait genomic selection using different methods
    • Calus MPL, Veerkamp RF (2011) Accuracy of multi-trait genomic selection using different methods. Genet Sel Evol. https://doi.org/10.1186/1297-9686-43-26
    • (2011) Genet Sel Evol
    • Calus, M.P.L.1    Veerkamp, R.F.2
  • 8
    • 84884358531 scopus 로고    scopus 로고
    • Accuracy of genomewide selection for different traits with constant population size, heritability, and number of markers
    • Combs E, Bernardo R (2013) Accuracy of genomewide selection for different traits with constant population size, heritability, and number of markers. Plant Genome 6(1):1–7. https://doi.org/10.3835/plantgenome2012.11.0030
    • (2013) Plant Genome , vol.6 , Issue.1 , pp. 1-7
    • Combs, E.1    Bernardo, R.2
  • 9
    • 84876390765 scopus 로고    scopus 로고
    • Whole-genome regression and prediction methods applied to plant and animal breeding
    • de los Campos G, Hickey JM, Pong-Wong R, Daetwyler HD, Calus MPL (2013) Whole-genome regression and prediction methods applied to plant and animal breeding. Genetics 193(2):327–345. https://doi.org/10.1534/genetics.112.143313
    • (2013) Genetics , vol.193 , Issue.2 , pp. 327-345
    • de los Campos, G.1    Hickey, J.M.2    Pong-Wong, R.3    Daetwyler, H.D.4    Calus, M.P.L.5
  • 10
    • 84930789438 scopus 로고    scopus 로고
    • Genomic heritability: what is it?
    • de los Campos G, Sorensen D, Gianola D (2015) Genomic heritability: what is it? Genetics 11(5):1–21. https://doi.org/10.1371/journal.pgen.1005048
    • (2015) Genetics , vol.11 , Issue.5 , pp. 1-21
    • de los Campos, G.1    Sorensen, D.2    Gianola, D.3
  • 12
    • 84883199029 scopus 로고    scopus 로고
    • Shrinkage estimation of the realized relationship matrix
    • PID: 23173092
    • Endelman JB, Jannink JL (2012) Shrinkage estimation of the realized relationship matrix. G3 2(11):1405–1413. https://doi.org/10.1534/g3.112.004259
    • (2012) estimation , vol.2 , Issue.11 , pp. 1405-1413
    • Endelman, J.B.1    Jannink, J.L.2
  • 16
    • 84921416921 scopus 로고    scopus 로고
    • Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods
    • Gawenda I, Thorwarth P, Günther T, Ordon F, Schmid KJ (2015) Genome-wide association studies in elite varieties of German winter barley using single-marker and haplotype-based methods. Plant Breed 134(1):2839. https://doi.org/10.1111/pbr.12237
    • (2015) Plant Breed , vol.134 , Issue.1 , pp. 2839
    • Gawenda, I.1    Thorwarth, P.2    Günther, T.3    Ordon, F.4    Schmid, K.J.5
  • 17
    • 0000356520 scopus 로고    scopus 로고
    • Accounting for natural and extraneuous variation in the analysis of field experiments
    • Gilmour AR, Cullis BR, Verbyla AP (1997) Accounting for natural and extraneuous variation in the analysis of field experiments. J Agric Biol Environ Stat 2(3):269–273
    • (1997) J Agric Biol Environ Stat , vol.2 , Issue.3 , pp. 269-273
    • Gilmour, A.R.1    Cullis, B.R.2    Verbyla, A.P.3
  • 19
    • 84897571691 scopus 로고    scopus 로고
    • Comparison of single-trait and multiple-trait genomic prediction models
    • PID: 24593261
    • Guo G, Zhao F, Wang Y, Zhang Y, Du L, Su G (2014) Comparison of single-trait and multiple-trait genomic prediction models. BMC Genet 15:30. https://doi.org/10.1186/1471-2156-15-30
    • (2014) BMC Genet , vol.15 , pp. 30
    • Guo, G.1    Zhao, F.2    Wang, Y.3    Zhang, Y.4    Du, L.5    Su, G.6
  • 20
    • 0004908904 scopus 로고
    • Breeding common bean for yield in mixtures
    • Hamblin J, Zimmermann MJO (1986) Breeding common bean for yield in mixtures. Plant Breed Rev 4:245–272. https://doi.org/10.1002/9781118061015.ch8
    • (1986) Plant Breed Rev , vol.4 , pp. 245-272
    • Hamblin, J.1    Zimmermann, M.J.O.2
  • 21
    • 59349098163 scopus 로고    scopus 로고
    • Genomic selection in dairy cattle: progress and challenges
    • COI: 1:CAS:528:DC%2BD1MXit1Kju7s%3D, PID: 19164653
    • Hayes BJ, Bowman PJ, Chamberlain AJ, Goddard ME (2009a) Genomic selection in dairy cattle: progress and challenges. J Dairy Sci 92(2):433–443. https://doi.org/10.3168/jds.2008-1646
    • (2009) J Dairy Sci , vol.92 , Issue.2 , pp. 433-443
    • Hayes, B.J.1    Bowman, P.J.2    Chamberlain, A.J.3    Goddard, M.E.4
  • 22
    • 65249179516 scopus 로고    scopus 로고
    • Increased accuracy of artificial selection by using the realized relationship matrix
    • COI: 1:CAS:528:DC%2BD1MXit1aisbc%3D
    • Hayes BJ, Visscher PM (2009b) Increased accuracy of artificial selection by using the realized relationship matrix. Genet Res 91(1):47–60. https://doi.org/10.1017/S0016672308009981
    • (2009) Genet Res , vol.91 , Issue.1 , pp. 47-60
    • Hayes, B.J.1    Visscher, P.M.2
  • 23
    • 78650127985 scopus 로고    scopus 로고
    • Plant breeding with genomic selection: gain per unit time and cost
    • Heffner EL, Lorenz AJ, Jannink JL, Sorrells ME (2010) Plant breeding with genomic selection: gain per unit time and cost. Crop Sci 50(5):1681. https://doi.org/10.2135/cropsci2009.11.0662
    • (2010) Crop Sci , vol.50 , Issue.5 , pp. 1681
    • Heffner, E.L.1    Lorenz, A.J.2    Jannink, J.L.3    Sorrells, M.E.4
  • 24
    • 85167520539 scopus 로고    scopus 로고
    • Genomic selection accuracy using multifamily prediction models in a wheat breeding program
    • Heffner EL, Jannink JL, Sorrells ME (2011) Genomic selection accuracy using multifamily prediction models in a wheat breeding program. Plant Genome 4(1):65–75. https://doi.org/10.3835/plantgenome2010.12.0029
    • (2011) Plant Genome , vol.4 , Issue.1 , pp. 65-75
    • Heffner, E.L.1    Jannink, J.L.2    Sorrells, M.E.3
  • 25
    • 0016704147 scopus 로고
    • Best linear unbiased estimation and prediction under a selection model
    • COI: 1:STN:280:DyaE28%2FhvFegsA%3D%3D, PID: 1174616
    • Henderson CR (1975) Best linear unbiased estimation and prediction under a selection model. Biometrics 31(2):423–447
    • (1975) Biometrics , vol.31 , Issue.2 , pp. 423-447
    • Henderson, C.R.1
  • 26
    • 82955176938 scopus 로고    scopus 로고
    • Genomic selection in plant breeding: a comparison of models
    • Heslot N, Yang HP, Sorrells ME, Jannink JL (2012) Genomic selection in plant breeding: a comparison of models. Crop Sci 52(1):146–160. https://doi.org/10.2135/cropsci2011.06.0297
    • (2012) Crop Sci , vol.52 , Issue.1 , pp. 146-160
    • Heslot, N.1    Yang, H.P.2    Sorrells, M.E.3    Jannink, J.L.4
  • 27
    • 85082119545 scopus 로고    scopus 로고
    • Perspectives for genomic selection applications and research in plants
    • Heslot N, Jannink JL, Sorrells ME (2015) Perspectives for genomic selection applications and research in plants. Crop Sci 55(1):1–12. https://doi.org/10.2135/cropsci2014.03.0249
    • (2015) Crop Sci , vol.55 , Issue.1 , pp. 1-12
    • Heslot, N.1    Jannink, J.L.2    Sorrells, M.E.3
  • 28
    • 84870707772 scopus 로고    scopus 로고
    • Multiple-trait genomic selection methods increase genetic value prediction accuracy
    • PID: 23086217
    • Jia Y, Jannink JL (2012) Multiple-trait genomic selection methods increase genetic value prediction accuracy. Genetics 192(4):1513–1522. https://doi.org/10.1534/genetics.112.144246
    • (2012) Genetics , vol.192 , Issue.4 , pp. 1513-1522
    • Jia, Y.1    Jannink, J.L.2
  • 29
    • 0037947668 scopus 로고    scopus 로고
    • Genetic parameters and evaluations from single- and multiple-trait analysis of dairy cow fertility and milk production
    • Kadarmideen HN, Thompson R, Coffey MP, Kossaibati MA (2003) Genetic parameters and evaluations from single- and multiple-trait analysis of dairy cow fertility and milk production. Livest Prod Sci 81(2—-3):183–195. https://doi.org/10.1016/S0301-6226(02)00274-9
    • (2003) Livest Prod Sci , vol.81 , Issue.2-3 , pp. 183-195
    • Kadarmideen, H.N.1    Thompson, R.2    Coffey, M.P.3    Kossaibati, M.A.4
  • 30
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • COI: 1:CAS:528:DC%2BC38Xjt1Oqt7c%3D, PID: 22388286
    • Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357–360. https://doi.org/10.1038/nmeth.1923
    • (2012) Nat Methods , vol.9 , Issue.4 , pp. 357-360
    • Langmead, B.1    Salzberg, S.L.2
  • 32
    • 84911486846 scopus 로고    scopus 로고
    • Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches
    • Lipka AE, Lu F, Cherney JH, Buckler ES, Casler MD, Costich DE (2014) Accelerating the switchgrass (Panicum virgatum L.) breeding cycle using genomic selection approaches. PloS one 9(11):e112,227. https://doi.org/10.1371/journal.pone.0112227
    • (2014) PloS one , vol.9 , Issue.11
    • Lipka, A.E.1    Lu, F.2    Cherney, J.H.3    Buckler, E.S.4    Casler, M.D.5    Costich, D.E.6
  • 33
    • 18044381689 scopus 로고
    • Sorghum improvement for energy production
    • Monk RL, Miller FR, McBee GG (1984) Sorghum improvement for energy production. Biomass 6(1—-2):145–153. https://doi.org/10.1016/0144-4565(84)90017-9
    • (1984) Biomass , vol.6 , Issue.1-2 , pp. 145-153
    • Monk, R.L.1    Miller, F.R.2    McBee, G.G.3
  • 35
    • 84907095419 scopus 로고    scopus 로고
    • R: a language and environment for statistical computing
    • Vienna, Austria
    • R Core Team (2014) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/. Accessed 4 July 2016
    • (2014) R Foundation for Statistical Computing
    • Core Team, R.1
  • 36
    • 84878617144 scopus 로고    scopus 로고
    • Genomic predictability of interconnected biparental maize populations
    • PID: 23535384
    • Riedelsheimer C, Endelman JB, Stange M, Sorrells ME, Jannink JL, Melchinger AE (2013) Genomic predictability of interconnected biparental maize populations. Genetics 194(2):493–503. https://doi.org/10.1534/genetics.113.150227
    • (2013) Genetics , vol.194 , Issue.2 , pp. 493-503
    • Riedelsheimer, C.1    Endelman, J.B.2    Stange, M.3    Sorrells, M.E.4    Jannink, J.L.5    Melchinger, A.E.6
  • 37
    • 0001625309 scopus 로고
    • Sire and cow evaluation under multiple trait models
    • Schaeffer LR (1984) Sire and cow evaluation under multiple trait models. J Dairy Sci 67(7):1567–1580. https://doi.org/10.3168/jds.S0022-0302(84)81479-4
    • (1984) J Dairy Sci , vol.67 , Issue.7 , pp. 1567-1580
    • Schaeffer, L.R.1
  • 38
    • 84956597903 scopus 로고    scopus 로고
    • Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes
    • COI: 1:CAS:528:DC%2BC2MXhvVeqsb7K, PID: 26561306
    • Schulthess AW, Wang Y, Miedaner T, Wilde P, Reif JC (2016) Multiple-trait- and selection indices-genomic predictions for grain yield and protein content in rye for feeding purposes. Theor Appl Genet 129(2):273–287. https://doi.org/10.1007/s00122-015-2626-6
    • (2016) Theor Appl Genet , vol.129 , Issue.2 , pp. 273-287
    • Schulthess, A.W.1    Wang, Y.2    Miedaner, T.3    Wilde, P.4    Reif, J.C.5
  • 39
    • 84857084352 scopus 로고    scopus 로고
    • QTL for fibre-related traits in grain sweet sorghum as a tool for the enhancement of sorghum as a biomass crop
    • PID: 21739141
    • Shiringani AL, Friedt W (2011) QTL for fibre-related traits in grain sweet sorghum as a tool for the enhancement of sorghum as a biomass crop. Theor Appl Genet 123(6):999–1011. https://doi.org/10.1007/s00122-011-1642-4
    • (2011) Theor Appl Genet , vol.123 , Issue.6 , pp. 999-1011
    • Shiringani, A.L.1    Friedt, W.2
  • 40
    • 77949841528 scopus 로고    scopus 로고
    • Testing strategies for genomic selection in aquaculture breeding programs
    • Sonesson AK, Meuwissen THE (2009) Testing strategies for genomic selection in aquaculture breeding programs. Genet Sel Evol 41(37):1–9. https://doi.org/10.1186/1297-9686-41-37
    • (2009) Genet Sel Evol , vol.41 , Issue.37 , pp. 1-9
    • Sonesson, A.K.1    Meuwissen, T.H.E.2
  • 41
    • 84907506800 scopus 로고    scopus 로고
    • Accuracy of genomic prediction when combining two related crossbred populations
    • PID: 25149337
    • Vallée A, van Arendonk JAM, Bovenhuis H (2014) Accuracy of genomic prediction when combining two related crossbred populations. J Anim Sci 92(10):4342–4348. https://doi.org/10.2527/jas.2014-8109
    • (2014) J Anim Sci , vol.92 , Issue.10 , pp. 4342-4348
    • Vallée, A.1    van Arendonk, J.A.M.2    Bovenhuis, H.3
  • 42
    • 55849133422 scopus 로고    scopus 로고
    • Efficient methods to compute genomic predictions
    • COI: 1:CAS:528:DC%2BD1cXhtlajtLzO
    • VanRaden (2008) Efficient methods to compute genomic predictions. Am Dairy Sci Assoc 91:4414–4423. https://doi.org/10.3168/jds.2007-0980
    • (2008) Am Dairy Sci Assoc , vol.91 , pp. 4414-4423
    • VanRaden, P.M.1
  • 43
    • 85008914031 scopus 로고    scopus 로고
    • Genetic enhancement of sorghum for biomass utilization
    • Paterson HA, (ed), Springer, New York
    • Vermerris W, Saballos A (2013) Genetic enhancement of sorghum for biomass utilization. In: Paterson HA (ed) Genomics of the Saccharinae. Springer, New York, pp 391–425
    • (2013) Genomics of the Saccharinae , pp. 391-425
    • Vermerris, W.1    Saballos, A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.