-
1
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
Lang, G. I. et al. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500, 571-574 (2013).
-
(2013)
Nature
, vol.500
, pp. 571-574
-
-
Lang, G.I.1
-
2
-
-
84888213196
-
Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
-
Kvitek, D. J. & Sherlock, G. Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet. 9, e1003972 (2013).
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003972
-
-
Kvitek, D.J.1
Sherlock, G.2
-
3
-
-
70350641005
-
Genome evolution and adaptation in a long-term experiment with Escherichia coli
-
Barrick, J. E. et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247 (2009).
-
(2009)
Nature
, vol.461
, pp. 1243-1247
-
-
Barrick, J.E.1
-
4
-
-
84982085494
-
Tempo and mode of genome evolution in a 50,000-generation experiment
-
Tenaillon, O. et al. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature 536, 165-170 (2016).
-
(2016)
Nature
, vol.536
, pp. 165-170
-
-
Tenaillon, O.1
-
5
-
-
78951475034
-
Mutational effects and population dynamics during viral adaptation challenge current models
-
Miller, C. R., Joyce, P. & Wichman, H. A. Mutational effects and population dynamics during viral adaptation challenge current models. Genetics 187, 185-202 (2011).
-
(2011)
Genetics
, vol.187
, pp. 185-202
-
-
Miller, C.R.1
Joyce, P.2
Wichman, H.A.3
-
6
-
-
84960846818
-
Sex speeds adaptation by altering the dynamics of molecular evolution
-
McDonald, M. J., Rice, D. P. & Desai, M. M. Sex speeds adaptation by altering the dynamics of molecular evolution. Nature 531, 233-236 (2016).
-
(2016)
Nature
, vol.531
, pp. 233-236
-
-
McDonald, M.J.1
Rice, D.P.2
Desai, M.M.3
-
7
-
-
84971315630
-
Population genomics of intrapatient HIV-1 evolution
-
Zanini, F. et al. Population genomics of intrapatient HIV-1 evolution. eLife 4, e11282 (2015).
-
(2015)
ELife
, vol.4
, pp. e11282
-
-
Zanini, F.1
-
8
-
-
84895858301
-
A predictive fitness model for influenza
-
Luksza, M. & Lässig, M. A predictive fitness model for influenza. Nature 507, 57-61 (2014).
-
(2014)
Nature
, vol.507
, pp. 57-61
-
-
Luksza, M.1
Lässig, M.2
-
9
-
-
82255186689
-
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
-
Lieberman, T. D. et al. Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat. Genet. 43, 1275-1280 (2011).
-
(2011)
Nat. Genet.
, vol.43
, pp. 1275-1280
-
-
Lieberman, T.D.1
-
10
-
-
84861550476
-
The life history of 21 breast cancers
-
Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007 (2012).
-
(2012)
Cell
, vol.149
, pp. 994-1007
-
-
Nik-Zainal, S.1
-
11
-
-
84884652658
-
Genetic draft, selective interference, and population genetics of rapid adaptation
-
Neher, R. A. Genetic draft, selective interference, and population genetics of rapid adaptation. Annu. Rev. Ecol. Evol. Syst. 44, 195-215 (2013).
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 195-215
-
-
Neher, R.A.1
-
12
-
-
84859448396
-
Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
-
Good, B. H., Rouzine, I. M., Balick, D. J., Hallatschek, O. & Desai, M. M. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc. Natl Acad. Sci. USA 109, 4950-4955 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 4950-4955
-
-
Good, B.H.1
Rouzine, I.M.2
Balick, D.J.3
Hallatschek, O.4
Desai, M.M.5
-
13
-
-
83455243204
-
Emergent neutrality in adaptive asexual evolution
-
Schiffels, S., Szöllosi, G. J., Mustonen, V. & Lässig, M. Emergent neutrality in adaptive asexual evolution. Genetics 189, 1361-1375 (2011).
-
(2011)
Genetics
, vol.189
, pp. 1361-1375
-
-
Schiffels, S.1
Szöllosi, G.J.2
Mustonen, V.3
Lässig, M.4
-
14
-
-
84908632102
-
Deleterious passengers in adapting populations
-
Good, B. H. & Desai, M. M. Deleterious passengers in adapting populations. Genetics 198, 1183-1208 (2014).
-
(2014)
Genetics
, vol.198
, pp. 1183-1208
-
-
Good, B.H.1
Desai, M.M.2
-
15
-
-
73249126286
-
The dynamics of adaptation on correlated fitness landscapes
-
Kryazhimskiy, S., Tkacik, G. & Plotkin, J. B. The dynamics of adaptation on correlated fitness landscapes. Proc. Natl Acad. Sci. USA 106, 18638-18643 (2009).
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 18638-18643
-
-
Kryazhimskiy, S.1
Tkacik, G.2
Plotkin, J.B.3
-
16
-
-
0026279651
-
Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
-
Lenski, R. E., Rose, M. R., Simpson, S. C. & Tadler, S. C. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 138, 1315-1341 (1991).
-
(1991)
Am. Nat.
, vol.138
, pp. 1315-1341
-
-
Lenski, R.E.1
Rose, M.R.2
Simpson, S.C.3
Tadler, S.C.4
-
17
-
-
84890116570
-
Long-term dynamics of adaptation in asexual populations
-
Wiser, M. J., Ribeck, N. & Lenski, R. E. Long-term dynamics of adaptation in asexual populations. Science 342, 1364-1367 (2013).
-
(2013)
Science
, vol.342
, pp. 1364-1367
-
-
Wiser, M.J.1
Ribeck, N.2
Lenski, R.E.3
-
18
-
-
84951808980
-
Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli
-
Lenski, R. E. et al. Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli. Proc. R. Soc. B 282, 20152292 (2015).
-
(2015)
Proc. R. Soc. B
, vol.282
, pp. 20152292
-
-
Lenski, R.E.1
-
19
-
-
0030620273
-
Evolution of high mutation rates in experimental populations of E. Coli
-
Sniegowski, P. D., Gerrish, P. J. & Lenski, R. E. Evolution of high mutation rates in experimental populations of E. coli. Nature 387, 703-705 (1997).
-
(1997)
Nature
, vol.387
, pp. 703-705
-
-
Sniegowski, P.D.1
Gerrish, P.J.2
Lenski, R.E.3
-
20
-
-
84871981698
-
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
-
Wielgoss, S. et al. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proc. Natl Acad. Sci. USA 110, 222-227 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. 222-227
-
-
Wielgoss, S.1
-
21
-
-
0025886466
-
A constant rate of spontaneous mutation in DNA-based microbes
-
Drake, J. W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl Acad. Sci. USA 88, 7160-7164 (1991).
-
(1991)
Proc. Natl Acad. Sci. USA
, vol.88
, pp. 7160-7164
-
-
Drake, J.W.1
-
23
-
-
2542583245
-
The fate of competing beneficial mutations in an asexual population
-
Gerrish, P. J. & Lenski, R. E. The fate of competing beneficial mutations in an asexual population. Genetica 102-103, 127-144 (1998).
-
(1998)
Genetica
, vol.102-103
, pp. 127-144
-
-
Gerrish, P.J.1
Lenski, R.E.2
-
24
-
-
33847314378
-
Beneficial mutation selection balance and the effect of linkage on positive selection
-
Desai, M. M. & Fisher, D. S. Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176, 1759-1798 (2007).
-
(2007)
Genetics
, vol.176
, pp. 1759-1798
-
-
Desai, M.M.1
Fisher, D.S.2
-
25
-
-
84887037026
-
The dynamics of genetic draft in rapidly adapting populations
-
Kosheleva, K. & Desai, M. M. The dynamics of genetic draft in rapidly adapting populations. Genetics 195, 1007-1025 (2013).
-
(2013)
Genetics
, vol.195
, pp. 1007-1025
-
-
Kosheleva, K.1
Desai, M.M.2
-
26
-
-
84876366774
-
Genetic diversity and the structure of genealogies in rapidly adapting populations
-
Desai, M. M., Walczak, A. M. & Fisher, D. S. Genetic diversity and the structure of genealogies in rapidly adapting populations. Genetics 193, 565-585 (2013).
-
(2013)
Genetics
, vol.193
, pp. 565-585
-
-
Desai, M.M.1
Walczak, A.M.2
Fisher, D.S.3
-
27
-
-
0034104460
-
Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism
-
Rozen, D. E. & Lenski, R. E. Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism. Am. Nat. 155, 24-35 (2000).
-
(2000)
Am. Nat.
, vol.155
, pp. 24-35
-
-
Rozen, D.E.1
Lenski, R.E.2
-
28
-
-
84897086957
-
Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli
-
Plucain, J. et al. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science 343, 1366-1369 (2014).
-
(2014)
Science
, vol.343
, pp. 1366-1369
-
-
Plucain, J.1
-
29
-
-
84931464826
-
Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli
-
Maddamsetti, R., Lenski, R. E. & Barrick, J. E. Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli. Genetics 200, 619-631 (2015).
-
(2015)
Genetics
, vol.200
, pp. 619-631
-
-
Maddamsetti, R.1
Lenski, R.E.2
Barrick, J.E.3
-
30
-
-
84941242209
-
Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations
-
Frenkel, E. M. et al. Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations. Proc. Natl Acad. Sci. USA 112, 11306-11311 (2015).
-
(2015)
Proc. Natl Acad. Sci. USA
, vol.112
, pp. 11306-11311
-
-
Frenkel, E.M.1
-
31
-
-
36749000572
-
Clonal interference in large populations
-
Park, S. C. & Krug, J. Clonal interference in large populations. Proc. Natl Acad. Sci. USA 104, 18135-18140 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 18135-18140
-
-
Park, S.C.1
Krug, J.2
-
32
-
-
84874450978
-
Asexual evolution waves: Fluctuations and universality
-
Fisher, D. S. Asexual evolution waves: fluctuations and universality. J. Stat. Mech. 2013, P01011 (2013).
-
(2013)
J. Stat. Mech.
, vol.2013
, pp. P01011
-
-
Fisher, D.S.1
-
33
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald, J. H. & Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991).
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
34
-
-
33745166593
-
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
-
Woods, R., Schneider, D., Winkworth, C. L., Riley, M. A. & Lenski, R. E. Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proc. Natl Acad. Sci. USA 103, 9107-9112 (2006).
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 9107-9112
-
-
Woods, R.1
Schneider, D.2
Winkworth, C.L.3
Riley, M.A.4
Lenski, R.E.5
-
35
-
-
45849093668
-
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
-
Blount, Z. D., Borland, C. Z. & Lenski, R. E. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl Acad. Sci. USA 105, 7899-7906 (2008).
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 7899-7906
-
-
Blount, Z.D.1
Borland, C.Z.2
Lenski, R.E.3
-
36
-
-
84866944595
-
Genomic analysis of a key innovation in an experimental Escherichia coli population
-
Blount, Z. D., Barrick, J. E., Davidson, C. J. & Lenski, R. E. Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature 489, 513-518 (2012).
-
(2012)
Nature
, vol.489
, pp. 513-518
-
-
Blount, Z.D.1
Barrick, J.E.2
Davidson, C.J.3
Lenski, R.E.4
-
37
-
-
84949871122
-
Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment
-
Quandt, E. M. et al. Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment. eLife 4, e09696 (2015).
-
(2015)
ELife
, vol.4
, pp. e09696
-
-
Quandt, E.M.1
|