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Volumn 551, Issue 7678, 2017, Pages 45-50

The dynamics of molecular evolution over 60,000 generations

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; BACTERIUM; COEXISTENCE; DOMINANCE; EPISTASIS; EVOLUTION; EXPERIMENTAL STUDY; FITNESS; GENOME; MOLECULAR ANALYSIS; MUTATION; NATURAL SELECTION;

EID: 85032924702     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature24287     Document Type: Article
Times cited : (488)

References (37)
  • 1
    • 84883132678 scopus 로고    scopus 로고
    • Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
    • Lang, G. I. et al. Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500, 571-574 (2013).
    • (2013) Nature , vol.500 , pp. 571-574
    • Lang, G.I.1
  • 2
    • 84888213196 scopus 로고    scopus 로고
    • Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
    • Kvitek, D. J. & Sherlock, G. Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet. 9, e1003972 (2013).
    • (2013) PLoS Genet. , vol.9 , pp. e1003972
    • Kvitek, D.J.1    Sherlock, G.2
  • 3
    • 70350641005 scopus 로고    scopus 로고
    • Genome evolution and adaptation in a long-term experiment with Escherichia coli
    • Barrick, J. E. et al. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247 (2009).
    • (2009) Nature , vol.461 , pp. 1243-1247
    • Barrick, J.E.1
  • 4
    • 84982085494 scopus 로고    scopus 로고
    • Tempo and mode of genome evolution in a 50,000-generation experiment
    • Tenaillon, O. et al. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature 536, 165-170 (2016).
    • (2016) Nature , vol.536 , pp. 165-170
    • Tenaillon, O.1
  • 5
    • 78951475034 scopus 로고    scopus 로고
    • Mutational effects and population dynamics during viral adaptation challenge current models
    • Miller, C. R., Joyce, P. & Wichman, H. A. Mutational effects and population dynamics during viral adaptation challenge current models. Genetics 187, 185-202 (2011).
    • (2011) Genetics , vol.187 , pp. 185-202
    • Miller, C.R.1    Joyce, P.2    Wichman, H.A.3
  • 6
    • 84960846818 scopus 로고    scopus 로고
    • Sex speeds adaptation by altering the dynamics of molecular evolution
    • McDonald, M. J., Rice, D. P. & Desai, M. M. Sex speeds adaptation by altering the dynamics of molecular evolution. Nature 531, 233-236 (2016).
    • (2016) Nature , vol.531 , pp. 233-236
    • McDonald, M.J.1    Rice, D.P.2    Desai, M.M.3
  • 7
    • 84971315630 scopus 로고    scopus 로고
    • Population genomics of intrapatient HIV-1 evolution
    • Zanini, F. et al. Population genomics of intrapatient HIV-1 evolution. eLife 4, e11282 (2015).
    • (2015) ELife , vol.4 , pp. e11282
    • Zanini, F.1
  • 8
    • 84895858301 scopus 로고    scopus 로고
    • A predictive fitness model for influenza
    • Luksza, M. & Lässig, M. A predictive fitness model for influenza. Nature 507, 57-61 (2014).
    • (2014) Nature , vol.507 , pp. 57-61
    • Luksza, M.1    Lässig, M.2
  • 9
    • 82255186689 scopus 로고    scopus 로고
    • Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
    • Lieberman, T. D. et al. Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat. Genet. 43, 1275-1280 (2011).
    • (2011) Nat. Genet. , vol.43 , pp. 1275-1280
    • Lieberman, T.D.1
  • 10
    • 84861550476 scopus 로고    scopus 로고
    • The life history of 21 breast cancers
    • Nik-Zainal, S. et al. The life history of 21 breast cancers. Cell 149, 994-1007 (2012).
    • (2012) Cell , vol.149 , pp. 994-1007
    • Nik-Zainal, S.1
  • 11
    • 84884652658 scopus 로고    scopus 로고
    • Genetic draft, selective interference, and population genetics of rapid adaptation
    • Neher, R. A. Genetic draft, selective interference, and population genetics of rapid adaptation. Annu. Rev. Ecol. Evol. Syst. 44, 195-215 (2013).
    • (2013) Annu. Rev. Ecol. Evol. Syst. , vol.44 , pp. 195-215
    • Neher, R.A.1
  • 12
    • 84859448396 scopus 로고    scopus 로고
    • Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations
    • Good, B. H., Rouzine, I. M., Balick, D. J., Hallatschek, O. & Desai, M. M. Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations. Proc. Natl Acad. Sci. USA 109, 4950-4955 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 4950-4955
    • Good, B.H.1    Rouzine, I.M.2    Balick, D.J.3    Hallatschek, O.4    Desai, M.M.5
  • 13
    • 83455243204 scopus 로고    scopus 로고
    • Emergent neutrality in adaptive asexual evolution
    • Schiffels, S., Szöllosi, G. J., Mustonen, V. & Lässig, M. Emergent neutrality in adaptive asexual evolution. Genetics 189, 1361-1375 (2011).
    • (2011) Genetics , vol.189 , pp. 1361-1375
    • Schiffels, S.1    Szöllosi, G.J.2    Mustonen, V.3    Lässig, M.4
  • 14
    • 84908632102 scopus 로고    scopus 로고
    • Deleterious passengers in adapting populations
    • Good, B. H. & Desai, M. M. Deleterious passengers in adapting populations. Genetics 198, 1183-1208 (2014).
    • (2014) Genetics , vol.198 , pp. 1183-1208
    • Good, B.H.1    Desai, M.M.2
  • 15
    • 73249126286 scopus 로고    scopus 로고
    • The dynamics of adaptation on correlated fitness landscapes
    • Kryazhimskiy, S., Tkacik, G. & Plotkin, J. B. The dynamics of adaptation on correlated fitness landscapes. Proc. Natl Acad. Sci. USA 106, 18638-18643 (2009).
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 18638-18643
    • Kryazhimskiy, S.1    Tkacik, G.2    Plotkin, J.B.3
  • 16
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations
    • Lenski, R. E., Rose, M. R., Simpson, S. C. & Tadler, S. C. Long-term experimental evolution in Escherichia coli. I. Adaptation and divergence during 2,000 generations. Am. Nat. 138, 1315-1341 (1991).
    • (1991) Am. Nat. , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 17
    • 84890116570 scopus 로고    scopus 로고
    • Long-term dynamics of adaptation in asexual populations
    • Wiser, M. J., Ribeck, N. & Lenski, R. E. Long-term dynamics of adaptation in asexual populations. Science 342, 1364-1367 (2013).
    • (2013) Science , vol.342 , pp. 1364-1367
    • Wiser, M.J.1    Ribeck, N.2    Lenski, R.E.3
  • 18
    • 84951808980 scopus 로고    scopus 로고
    • Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli
    • Lenski, R. E. et al. Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli. Proc. R. Soc. B 282, 20152292 (2015).
    • (2015) Proc. R. Soc. B , vol.282 , pp. 20152292
    • Lenski, R.E.1
  • 19
    • 0030620273 scopus 로고    scopus 로고
    • Evolution of high mutation rates in experimental populations of E. Coli
    • Sniegowski, P. D., Gerrish, P. J. & Lenski, R. E. Evolution of high mutation rates in experimental populations of E. coli. Nature 387, 703-705 (1997).
    • (1997) Nature , vol.387 , pp. 703-705
    • Sniegowski, P.D.1    Gerrish, P.J.2    Lenski, R.E.3
  • 20
    • 84871981698 scopus 로고    scopus 로고
    • Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load
    • Wielgoss, S. et al. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proc. Natl Acad. Sci. USA 110, 222-227 (2013).
    • (2013) Proc. Natl Acad. Sci. USA , vol.110 , pp. 222-227
    • Wielgoss, S.1
  • 21
    • 0025886466 scopus 로고
    • A constant rate of spontaneous mutation in DNA-based microbes
    • Drake, J. W. A constant rate of spontaneous mutation in DNA-based microbes. Proc. Natl Acad. Sci. USA 88, 7160-7164 (1991).
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7160-7164
    • Drake, J.W.1
  • 23
    • 2542583245 scopus 로고    scopus 로고
    • The fate of competing beneficial mutations in an asexual population
    • Gerrish, P. J. & Lenski, R. E. The fate of competing beneficial mutations in an asexual population. Genetica 102-103, 127-144 (1998).
    • (1998) Genetica , vol.102-103 , pp. 127-144
    • Gerrish, P.J.1    Lenski, R.E.2
  • 24
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation selection balance and the effect of linkage on positive selection
    • Desai, M. M. & Fisher, D. S. Beneficial mutation selection balance and the effect of linkage on positive selection. Genetics 176, 1759-1798 (2007).
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 25
    • 84887037026 scopus 로고    scopus 로고
    • The dynamics of genetic draft in rapidly adapting populations
    • Kosheleva, K. & Desai, M. M. The dynamics of genetic draft in rapidly adapting populations. Genetics 195, 1007-1025 (2013).
    • (2013) Genetics , vol.195 , pp. 1007-1025
    • Kosheleva, K.1    Desai, M.M.2
  • 26
    • 84876366774 scopus 로고    scopus 로고
    • Genetic diversity and the structure of genealogies in rapidly adapting populations
    • Desai, M. M., Walczak, A. M. & Fisher, D. S. Genetic diversity and the structure of genealogies in rapidly adapting populations. Genetics 193, 565-585 (2013).
    • (2013) Genetics , vol.193 , pp. 565-585
    • Desai, M.M.1    Walczak, A.M.2    Fisher, D.S.3
  • 27
    • 0034104460 scopus 로고    scopus 로고
    • Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism
    • Rozen, D. E. & Lenski, R. E. Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism. Am. Nat. 155, 24-35 (2000).
    • (2000) Am. Nat. , vol.155 , pp. 24-35
    • Rozen, D.E.1    Lenski, R.E.2
  • 28
    • 84897086957 scopus 로고    scopus 로고
    • Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli
    • Plucain, J. et al. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science 343, 1366-1369 (2014).
    • (2014) Science , vol.343 , pp. 1366-1369
    • Plucain, J.1
  • 29
    • 84931464826 scopus 로고    scopus 로고
    • Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli
    • Maddamsetti, R., Lenski, R. E. & Barrick, J. E. Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli. Genetics 200, 619-631 (2015).
    • (2015) Genetics , vol.200 , pp. 619-631
    • Maddamsetti, R.1    Lenski, R.E.2    Barrick, J.E.3
  • 30
    • 84941242209 scopus 로고    scopus 로고
    • Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations
    • Frenkel, E. M. et al. Crowded growth leads to the spontaneous evolution of semistable coexistence in laboratory yeast populations. Proc. Natl Acad. Sci. USA 112, 11306-11311 (2015).
    • (2015) Proc. Natl Acad. Sci. USA , vol.112 , pp. 11306-11311
    • Frenkel, E.M.1
  • 31
    • 36749000572 scopus 로고    scopus 로고
    • Clonal interference in large populations
    • Park, S. C. & Krug, J. Clonal interference in large populations. Proc. Natl Acad. Sci. USA 104, 18135-18140 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 18135-18140
    • Park, S.C.1    Krug, J.2
  • 32
    • 84874450978 scopus 로고    scopus 로고
    • Asexual evolution waves: Fluctuations and universality
    • Fisher, D. S. Asexual evolution waves: fluctuations and universality. J. Stat. Mech. 2013, P01011 (2013).
    • (2013) J. Stat. Mech. , vol.2013 , pp. P01011
    • Fisher, D.S.1
  • 33
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • McDonald, J. H. & Kreitman, M. Adaptive protein evolution at the Adh locus in Drosophila. Nature 351, 652-654 (1991).
    • (1991) Nature , vol.351 , pp. 652-654
    • McDonald, J.H.1    Kreitman, M.2
  • 34
    • 33745166593 scopus 로고    scopus 로고
    • Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
    • Woods, R., Schneider, D., Winkworth, C. L., Riley, M. A. & Lenski, R. E. Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proc. Natl Acad. Sci. USA 103, 9107-9112 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 9107-9112
    • Woods, R.1    Schneider, D.2    Winkworth, C.L.3    Riley, M.A.4    Lenski, R.E.5
  • 35
    • 45849093668 scopus 로고    scopus 로고
    • Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
    • Blount, Z. D., Borland, C. Z. & Lenski, R. E. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proc. Natl Acad. Sci. USA 105, 7899-7906 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 7899-7906
    • Blount, Z.D.1    Borland, C.Z.2    Lenski, R.E.3
  • 36
    • 84866944595 scopus 로고    scopus 로고
    • Genomic analysis of a key innovation in an experimental Escherichia coli population
    • Blount, Z. D., Barrick, J. E., Davidson, C. J. & Lenski, R. E. Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature 489, 513-518 (2012).
    • (2012) Nature , vol.489 , pp. 513-518
    • Blount, Z.D.1    Barrick, J.E.2    Davidson, C.J.3    Lenski, R.E.4
  • 37
    • 84949871122 scopus 로고    scopus 로고
    • Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment
    • Quandt, E. M. et al. Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment. eLife 4, e09696 (2015).
    • (2015) ELife , vol.4 , pp. e09696
    • Quandt, E.M.1


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