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Volumn 49, Issue 3, 2017, Pages

Concordance between upper and lower airway microbiota in infants with cystic fibrosis

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 85032860630     PISSN: 09031936     EISSN: 13993003     Source Type: Journal    
DOI: 10.1183/13993003.02235-2016     Document Type: Article
Times cited : (57)

References (46)
  • 1
    • 84929340326 scopus 로고    scopus 로고
    • Lung microbiota across age and disease stage in cystic fibrosis
    • Coburn B, Wang PW, Diaz Caballero J, et al. Lung microbiota across age and disease stage in cystic fibrosis. Sci Rep 2015; 5: 10241.
    • (2015) Sci Rep , vol.5 , pp. 10241
    • Coburn, B.1    Wang, P.W.2    Diaz Caballero, J.3
  • 2
    • 84937517061 scopus 로고    scopus 로고
    • Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis
    • Parkins MD, Floto RA. Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis. J Cyst Fibros 2015; 14: 293–304.
    • (2015) J Cyst Fibros , vol.14 , pp. 293-304
    • Parkins, M.D.1    Floto, R.A.2
  • 4
    • 84901760493 scopus 로고    scopus 로고
    • The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography
    • Whiteson KL, Bailey B, Bergkessel M, et al. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. Am J Respir Crit Care Med 2014; 189: 1309–1315.
    • (2014) Am J Respir Crit Care Med , vol.189 , pp. 1309-1315
    • Whiteson, K.L.1    Bailey, B.2    Bergkessel, M.3
  • 5
    • 0035282729 scopus 로고    scopus 로고
    • Aspiration pneumonitis and aspiration pneumonia
    • Marik PE. Aspiration pneumonitis and aspiration pneumonia. N Engl J Med 2001; 344: 665–671.
    • (2001) N Engl J Med , vol.344 , pp. 665-671
    • Marik, P.E.1
  • 6
    • 84877899252 scopus 로고    scopus 로고
    • Comparison of the respiratory microbiome in healthy nonsmokers and smokers
    • Microbiome Project
    • Morris A, Beck JM, Schloss PD, et al., Microbiome Project. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med 2013; 187: 1067–1075.
    • (2013) Am J Respir Crit Care Med , vol.187 , pp. 1067-1075
    • Morris, A.1    Beck, J.M.2    Schloss, P.D.3
  • 7
    • 84907060662 scopus 로고    scopus 로고
    • Three clinically distinct chronic pediatric airway infections share a common core microbiota
    • van der Gast CJ, Cuthbertson L, Rogers GB, et al. Three clinically distinct chronic pediatric airway infections share a common core microbiota. Ann Am Thorac Soc 2014; 11: 1039–1048.
    • (2014) Ann Am Thorac Soc , vol.11 , pp. 1039-1048
    • Van Der Gast, C.J.1    Cuthbertson, L.2    Rogers, G.B.3
  • 8
    • 48749099346 scopus 로고    scopus 로고
    • Disease surveillance using bronchoalveolar lavage
    • Brennan S, Gangell C, Wainwright C, et al. Disease surveillance using bronchoalveolar lavage. Paediatr Respir Rev 2008; 9: 151–159.
    • (2008) Paediatr Respir Rev , vol.9 , pp. 151-159
    • Brennan, S.1    Gangell, C.2    Wainwright, C.3
  • 9
    • 84957825152 scopus 로고    scopus 로고
    • Microbiological yield from induced sputum compared to oropharyngeal swab in young children with cystic fibrosis
    • Zampoli M, Pillay K, Carrara H, et al. Microbiological yield from induced sputum compared to oropharyngeal swab in young children with cystic fibrosis. J Cyst Fibros 2016; 15: 605–610.
    • (2016) J Cyst Fibros , vol.15 , pp. 605-610
    • Zampoli, M.1    Pillay, K.2    Carrara, H.3
  • 10
    • 84943748936 scopus 로고    scopus 로고
    • Induced sputum in young healthy children with cystic fibrosis
    • Forton J. Induced sputum in young healthy children with cystic fibrosis. Paediatr Respir Rev 2015; 16: Suppl. 1, 6–8.
    • (2015) Paediatr Respir Rev , vol.16 , pp. 6-8
    • Forton, J.1
  • 11
    • 67249139656 scopus 로고    scopus 로고
    • Concordant genotype of upper and lower airways P. Aeruginosa and S. Aureus isolates in cystic fibrosis
    • Mainz JG, Naehrlich L, Schien M, et al. Concordant genotype of upper and lower airways P. aeruginosa and S. aureus isolates in cystic fibrosis. Thorax 2009; 64: 535–540.
    • (2009) Thorax , vol.64 , pp. 535-540
    • Mainz, J.G.1    Naehrlich, L.2    Schien, M.3
  • 12
    • 33748038057 scopus 로고    scopus 로고
    • Comparison of throat swabs and nasopharyngeal suction specimens in non-sputum-producing patients with cystic fibrosis
    • Taylor L, Corey M, Matlow A, et al. Comparison of throat swabs and nasopharyngeal suction specimens in non-sputum-producing patients with cystic fibrosis. Pediatr Pulmonol 2006; 41: 839–843.
    • (2006) Pediatr Pulmonol , vol.41 , pp. 839-843
    • Taylor, L.1    Corey, M.2    Matlow, A.3
  • 13
    • 0032718969 scopus 로고    scopus 로고
    • Diagnostic accuracy of oropharyngeal cultures in infants and young children with cystic fibrosis
    • Rosenfeld M, Emerson J, Accurso F, et al. Diagnostic accuracy of oropharyngeal cultures in infants and young children with cystic fibrosis. Pediatr Pulmonol 1999; 28: 321–328.
    • (1999) Pediatr Pulmonol , vol.28 , pp. 321-328
    • Rosenfeld, M.1    Emerson, J.2    Accurso, F.3
  • 14
    • 84942055700 scopus 로고    scopus 로고
    • Diagnostic accuracy and distress associated with oropharyngeal suction in cystic fibrosis
    • Doumit M, Belessis Y, Stelzer-Braid S, et al. Diagnostic accuracy and distress associated with oropharyngeal suction in cystic fibrosis. J Cyst Fibros 2016; 15: 473–478.
    • (2016) J Cyst Fibros , vol.15 , pp. 473-478
    • Doumit, M.1    Belessis, Y.2    Stelzer-Braid, S.3
  • 15
    • 0030001433 scopus 로고    scopus 로고
    • Bronchoalveolar lavage or oropharyngeal cultures to identify lower respiratory pathogens in infants with cystic fibrosis
    • Armstrong DS, Grimwood K, Carlin JB, et al. Bronchoalveolar lavage or oropharyngeal cultures to identify lower respiratory pathogens in infants with cystic fibrosis. Pediatr Pulmonol 1996; 21: 267–275.
    • (1996) Pediatr Pulmonol , vol.21 , pp. 267-275
    • Armstrong, D.S.1    Grimwood, K.2    Carlin, J.B.3
  • 16
    • 84919665462 scopus 로고    scopus 로고
    • The microbial community of the cystic fibrosis airway is disrupted in early life
    • Renwick J, McNally P, John B, et al. The microbial community of the cystic fibrosis airway is disrupted in early life. PLoS One 2014; 9: e109798.
    • (2014) PLoS One , vol.9 , pp. e109798
    • Renwick, J.1    McNally, P.2    John, B.3
  • 17
    • 84961291390 scopus 로고    scopus 로고
    • Comparison of microbiomes from different niches of upper and lower airways in children and adolescents with cystic fibrosis
    • Boutin S, Graeber SY, Weitnauer M, et al. Comparison of microbiomes from different niches of upper and lower airways in children and adolescents with cystic fibrosis. PLoS One 2015; 10: e0116029.
    • (2015) PLoS One , vol.10 , pp. e0116029
    • Boutin, S.1    Graeber, S.Y.2    Weitnauer, M.3
  • 18
    • 84865285995 scopus 로고    scopus 로고
    • Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota
    • Goddard AF, Staudinger BJ, Dowd SE, et al. Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota. Proc Natl Acad Sci USA 2012; 109: 13769–13774.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 13769-13774
    • Goddard, A.F.1    Staudinger, B.J.2    Dowd, S.E.3
  • 20
    • 84891951124 scopus 로고    scopus 로고
    • Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: Updated recommendations from the World Health Organization Pneumococcal Carriage Working Group
    • Satzke C, Turner P, Virolainen-Julkunen A, et al. Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. Vaccine 2013; 32: 165–179.
    • (2013) Vaccine , vol.32 , pp. 165-179
    • Satzke, C.1    Turner, P.2    Virolainen-Julkunen, A.3
  • 21
    • 0017163544 scopus 로고
    • Specimen collection and transport
    • Matsen JM, Ederer GM. Specimen collection and transport. Hum Pathol 1976; 7: 297–307.
    • (1976) Hum Pathol , vol.7 , pp. 297-307
    • Matsen, J.M.1    Ederer, G.M.2
  • 22
    • 84942089368 scopus 로고    scopus 로고
    • The benefit of taking a control sample when performing bronchoalveolar lavage
    • Linnane B, Clarke D, Murray P, et al. The benefit of taking a control sample when performing bronchoalveolar lavage. Thorax 2015; 70: 990.
    • (2015) Thorax , vol.70 , pp. 990
    • Linnane, B.1    Clarke, D.2    Murray, P.3
  • 23
    • 0033985571 scopus 로고    scopus 로고
    • Bronchoalveolar lavage in children
    • ERS Task Force on bronchoalveolar lavage in children. European Respiratory Society
    • de Blic J, Midulla F, Barbato A, et al. Bronchoalveolar lavage in children. ERS Task Force on bronchoalveolar lavage in children. European Respiratory Society. Eur Respir J 2000; 15: 217–231.
    • (2000) Eur Respir J , vol.15 , pp. 217-231
    • De Blic, J.1    Midulla, F.2    Barbato, A.3
  • 24
    • 84904245383 scopus 로고    scopus 로고
    • Streptococcus pneumoniae in saliva of Dutch primary school children
    • Wyllie AL, Chu MLJN, Schellens MHB, et al. Streptococcus pneumoniae in saliva of Dutch primary school children. PLoS One 2014; 9: e102045.
    • (2014) PLoS One , vol.9 , pp. e102045
    • Wyllie, A.L.1    Chu, M.L.J.N.2    Schellens, M.H.B.3
  • 25
    • 79952298772 scopus 로고    scopus 로고
    • Variability and diversity of nasopharyngeal microbiota in children: A metagenomic analysis
    • Bogaert D, Keijser B, Huse S, et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS One 2011; 6: e17035.
    • (2011) PLoS One , vol.6 , pp. e17035
    • Bogaert, D.1    Keijser, B.2    Huse, S.3
  • 26
    • 84863292680 scopus 로고    scopus 로고
    • Deep sequencing analyses of low density microbial communities: Working at the boundary of accurate microbiota detection
    • Biesbroek G, Sanders EAM, Roeselers G, et al. Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection. PLoS One 2012; 7: e32942.
    • (2012) PLoS One , vol.7 , pp. e32942
    • Biesbroek, G.1    Sanders, E.A.M.2    Roeselers, G.3
  • 27
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Meth 2010; 7: 335–336.
    • (2010) Nat Meth , vol.7 , pp. 335-336
    • Caporaso, J.G.1    Kuczynski, J.2    Stombaugh, J.3
  • 28
    • 84941763152 scopus 로고    scopus 로고
    • Pathogens, commensal symbionts, and pathobionts: Discovery and functional effects on the host
    • Hornef M. Pathogens, commensal symbionts, and pathobionts: discovery and functional effects on the host. ILAR J 2015; 56: 159–162.
    • (2015) ILAR J , vol.56 , pp. 159-162
    • Hornef, M.1
  • 30
    • 84875068215 scopus 로고    scopus 로고
    • Viral and bacterial interactions in the upper respiratory tract
    • Bosch AATM, Biesbroek G, Trzciński K, et al. Viral and bacterial interactions in the upper respiratory tract. PLoS Pathog 2013; 9: e1003057.
    • (2013) PLoS Pathog , vol.9 , pp. e1003057
    • Bosch, A.A.T.M.1    Biesbroek, G.2    Trzciński, K.3
  • 31
    • 84907292693 scopus 로고    scopus 로고
    • The impact of breastfeeding on nasopharyngeal microbial communities in infants
    • Biesbroek G, Bosch AATM, Wang X, et al. The impact of breastfeeding on nasopharyngeal microbial communities in infants. Am J Respir Crit Care Med 2014; 190: 298–308.
    • (2014) Am J Respir Crit Care Med , vol.190 , pp. 298-308
    • Biesbroek, G.1    Bosch, A.A.T.M.2    Wang, X.3
  • 33
    • 84919771657 scopus 로고    scopus 로고
    • Respiratory microbiota: Addressing clinical questions, informing clinical practice
    • Rogers GB, Shaw D, Marsh RL, et al. Respiratory microbiota: addressing clinical questions, informing clinical practice. Thorax 2015; 70: 74–81.
    • (2015) Thorax , vol.70 , pp. 74-81
    • Rogers, G.B.1    Shaw, D.2    Marsh, R.L.3
  • 34
    • 79960004119 scopus 로고    scopus 로고
    • Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
    • Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 2011; 39: W475–W478.
    • (2011) Nucleic Acids Res , vol.39 , pp. W475-W478
    • Letunic, I.1    Bork, P.2
  • 36
    • 67650712233 scopus 로고    scopus 로고
    • Lung disease at diagnosis in infants with cystic fibrosis detected by newborn screening
    • Sly PD, Brennan S, Gangell C, et al., on behalf of the Australian Respiratory Early Surveillance Team for Cystic Fibrosis (AREST-CF). Lung disease at diagnosis in infants with cystic fibrosis detected by newborn screening. Am J Respir Crit Care Med 2009; 180: 146–152.
    • (2009) Am J Respir Crit Care Med , vol.180 , pp. 146-152
    • Sly, P.D.1    Brennan, S.2    Gangell, C.3
  • 37
    • 84878000440 scopus 로고    scopus 로고
    • Risk factors for bronchiectasis in children with cystic fibrosis
    • Sly PD, Gangell CL, Chen L, et al. Risk factors for bronchiectasis in children with cystic fibrosis. N Engl J Med 2013; 368: 1963–1970.
    • (2013) N Engl J Med , vol.368 , pp. 1963-1970
    • Sly, P.D.1    Gangell, C.L.2    Chen, L.3
  • 38
    • 84926478997 scopus 로고    scopus 로고
    • Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods
    • Zemanick ET, Wagner BD, Robertson CE, et al. Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods. Ann Am Thorac Soc 2015; 12: 221–229.
    • (2015) Ann Am Thorac Soc , vol.12 , pp. 221-229
    • Zemanick, E.T.1    Wagner, B.D.2    Robertson, C.E.3
  • 39
    • 77953554827 scopus 로고    scopus 로고
    • Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa
    • Klepac-Ceraj V, Lemon KP, Martin TR, et al. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol 2010; 12: 1293–1303.
    • (2010) Environ Microbiol , vol.12 , pp. 1293-1303
    • Klepac-Ceraj, V.1    Lemon, K.P.2    Martin, T.R.3
  • 40
    • 77955292433 scopus 로고    scopus 로고
    • Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
    • Cox MJ, Allgaier M, Taylor B, et al. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 2010; 5: e11044.
    • (2010) PLoS One , vol.5 , pp. e11044
    • Cox, M.J.1    Allgaier, M.2    Taylor, B.3
  • 41
    • 84864370470 scopus 로고    scopus 로고
    • Microbial diversity in the cystic fibrosis airways: Where is thy sting?
    • VanDevanter DR, LiPuma JJ. Microbial diversity in the cystic fibrosis airways: where is thy sting? Future Microbiol 2012; 7: 801–803.
    • (2012) Future Microbiol , vol.7 , pp. 801-803
    • VanDevanter, D.R.1    LiPuma, J.J.2
  • 42
    • 84924981899 scopus 로고    scopus 로고
    • The microbiome in pediatric cystic fibrosis patients: The role of shared environment suggests a window of intervention
    • Hampton TH, Green DM, Cutting GR, et al. The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention. Microbiome 2014; 2: 14.
    • (2014) Microbiome , vol.2 , pp. 14
    • Hampton, T.H.1    Green, D.M.2    Cutting, G.R.3
  • 43
    • 0026377765 scopus 로고
    • Predictive value of oropharyngeal cultures for identifying lower airway bacteria in cystic fibrosis patients
    • Ramsey BW, Wentz KR, Smith AL, et al. Predictive value of oropharyngeal cultures for identifying lower airway bacteria in cystic fibrosis patients. Am Rev Respir Dis 1991; 144: 331–337.
    • (1991) Am Rev Respir Dis , vol.144 , pp. 331-337
    • Ramsey, B.W.1    Wentz, K.R.2    Smith, A.L.3
  • 44
    • 84942239416 scopus 로고    scopus 로고
    • Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
    • Dickson RP, Erb-Downward JR, Freeman CM, et al. Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography. Ann Am Thorac Soc 2015; 12: 821–830.
    • (2015) Ann Am Thorac Soc , vol.12 , pp. 821-830
    • Dickson, R.P.1    Erb-Downward, J.R.2    Freeman, C.M.3
  • 45
    • 80053122563 scopus 로고    scopus 로고
    • Topographical continuity of bacterial populations in the healthy human respiratory tract
    • Charlson ES, Bittinger K, Haas AR, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011; 184: 957–963.
    • (2011) Am J Respir Crit Care Med , vol.184 , pp. 957-963
    • Charlson, E.S.1    Bittinger, K.2    Haas, A.R.3
  • 46
    • 84961169184 scopus 로고    scopus 로고
    • Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis lung disease
    • Hogan DA, Willger SD, Dolben EL, et al. Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis lung disease. PLoS One 2016; 11: e0149998.
    • (2016) PLoS One , vol.11 , pp. e0149998
    • Hogan, D.A.1    Willger, S.D.2    Dolben, E.L.3


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