-
1
-
-
84929340326
-
Lung microbiota across age and disease stage in cystic fibrosis
-
Coburn B, Wang PW, Diaz Caballero J, et al. Lung microbiota across age and disease stage in cystic fibrosis. Sci Rep 2015; 5: 10241.
-
(2015)
Sci Rep
, vol.5
, pp. 10241
-
-
Coburn, B.1
Wang, P.W.2
Diaz Caballero, J.3
-
2
-
-
84937517061
-
Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis
-
Parkins MD, Floto RA. Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis. J Cyst Fibros 2015; 14: 293–304.
-
(2015)
J Cyst Fibros
, vol.14
, pp. 293-304
-
-
Parkins, M.D.1
Floto, R.A.2
-
4
-
-
84901760493
-
The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography
-
Whiteson KL, Bailey B, Bergkessel M, et al. The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis. Parallels from island biogeography. Am J Respir Crit Care Med 2014; 189: 1309–1315.
-
(2014)
Am J Respir Crit Care Med
, vol.189
, pp. 1309-1315
-
-
Whiteson, K.L.1
Bailey, B.2
Bergkessel, M.3
-
5
-
-
0035282729
-
Aspiration pneumonitis and aspiration pneumonia
-
Marik PE. Aspiration pneumonitis and aspiration pneumonia. N Engl J Med 2001; 344: 665–671.
-
(2001)
N Engl J Med
, vol.344
, pp. 665-671
-
-
Marik, P.E.1
-
6
-
-
84877899252
-
Comparison of the respiratory microbiome in healthy nonsmokers and smokers
-
Microbiome Project
-
Morris A, Beck JM, Schloss PD, et al., Microbiome Project. Comparison of the respiratory microbiome in healthy nonsmokers and smokers. Am J Respir Crit Care Med 2013; 187: 1067–1075.
-
(2013)
Am J Respir Crit Care Med
, vol.187
, pp. 1067-1075
-
-
Morris, A.1
Beck, J.M.2
Schloss, P.D.3
-
7
-
-
84907060662
-
Three clinically distinct chronic pediatric airway infections share a common core microbiota
-
van der Gast CJ, Cuthbertson L, Rogers GB, et al. Three clinically distinct chronic pediatric airway infections share a common core microbiota. Ann Am Thorac Soc 2014; 11: 1039–1048.
-
(2014)
Ann Am Thorac Soc
, vol.11
, pp. 1039-1048
-
-
Van Der Gast, C.J.1
Cuthbertson, L.2
Rogers, G.B.3
-
9
-
-
84957825152
-
Microbiological yield from induced sputum compared to oropharyngeal swab in young children with cystic fibrosis
-
Zampoli M, Pillay K, Carrara H, et al. Microbiological yield from induced sputum compared to oropharyngeal swab in young children with cystic fibrosis. J Cyst Fibros 2016; 15: 605–610.
-
(2016)
J Cyst Fibros
, vol.15
, pp. 605-610
-
-
Zampoli, M.1
Pillay, K.2
Carrara, H.3
-
10
-
-
84943748936
-
Induced sputum in young healthy children with cystic fibrosis
-
Forton J. Induced sputum in young healthy children with cystic fibrosis. Paediatr Respir Rev 2015; 16: Suppl. 1, 6–8.
-
(2015)
Paediatr Respir Rev
, vol.16
, pp. 6-8
-
-
Forton, J.1
-
11
-
-
67249139656
-
Concordant genotype of upper and lower airways P. Aeruginosa and S. Aureus isolates in cystic fibrosis
-
Mainz JG, Naehrlich L, Schien M, et al. Concordant genotype of upper and lower airways P. aeruginosa and S. aureus isolates in cystic fibrosis. Thorax 2009; 64: 535–540.
-
(2009)
Thorax
, vol.64
, pp. 535-540
-
-
Mainz, J.G.1
Naehrlich, L.2
Schien, M.3
-
12
-
-
33748038057
-
Comparison of throat swabs and nasopharyngeal suction specimens in non-sputum-producing patients with cystic fibrosis
-
Taylor L, Corey M, Matlow A, et al. Comparison of throat swabs and nasopharyngeal suction specimens in non-sputum-producing patients with cystic fibrosis. Pediatr Pulmonol 2006; 41: 839–843.
-
(2006)
Pediatr Pulmonol
, vol.41
, pp. 839-843
-
-
Taylor, L.1
Corey, M.2
Matlow, A.3
-
13
-
-
0032718969
-
Diagnostic accuracy of oropharyngeal cultures in infants and young children with cystic fibrosis
-
Rosenfeld M, Emerson J, Accurso F, et al. Diagnostic accuracy of oropharyngeal cultures in infants and young children with cystic fibrosis. Pediatr Pulmonol 1999; 28: 321–328.
-
(1999)
Pediatr Pulmonol
, vol.28
, pp. 321-328
-
-
Rosenfeld, M.1
Emerson, J.2
Accurso, F.3
-
14
-
-
84942055700
-
Diagnostic accuracy and distress associated with oropharyngeal suction in cystic fibrosis
-
Doumit M, Belessis Y, Stelzer-Braid S, et al. Diagnostic accuracy and distress associated with oropharyngeal suction in cystic fibrosis. J Cyst Fibros 2016; 15: 473–478.
-
(2016)
J Cyst Fibros
, vol.15
, pp. 473-478
-
-
Doumit, M.1
Belessis, Y.2
Stelzer-Braid, S.3
-
15
-
-
0030001433
-
Bronchoalveolar lavage or oropharyngeal cultures to identify lower respiratory pathogens in infants with cystic fibrosis
-
Armstrong DS, Grimwood K, Carlin JB, et al. Bronchoalveolar lavage or oropharyngeal cultures to identify lower respiratory pathogens in infants with cystic fibrosis. Pediatr Pulmonol 1996; 21: 267–275.
-
(1996)
Pediatr Pulmonol
, vol.21
, pp. 267-275
-
-
Armstrong, D.S.1
Grimwood, K.2
Carlin, J.B.3
-
16
-
-
84919665462
-
The microbial community of the cystic fibrosis airway is disrupted in early life
-
Renwick J, McNally P, John B, et al. The microbial community of the cystic fibrosis airway is disrupted in early life. PLoS One 2014; 9: e109798.
-
(2014)
PLoS One
, vol.9
, pp. e109798
-
-
Renwick, J.1
McNally, P.2
John, B.3
-
17
-
-
84961291390
-
Comparison of microbiomes from different niches of upper and lower airways in children and adolescents with cystic fibrosis
-
Boutin S, Graeber SY, Weitnauer M, et al. Comparison of microbiomes from different niches of upper and lower airways in children and adolescents with cystic fibrosis. PLoS One 2015; 10: e0116029.
-
(2015)
PLoS One
, vol.10
, pp. e0116029
-
-
Boutin, S.1
Graeber, S.Y.2
Weitnauer, M.3
-
18
-
-
84865285995
-
Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota
-
Goddard AF, Staudinger BJ, Dowd SE, et al. Direct sampling of cystic fibrosis lungs indicates that DNA-based analyses of upper-airway specimens can misrepresent lung microbiota. Proc Natl Acad Sci USA 2012; 109: 13769–13774.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, pp. 13769-13774
-
-
Goddard, A.F.1
Staudinger, B.J.2
Dowd, S.E.3
-
20
-
-
84891951124
-
Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: Updated recommendations from the World Health Organization Pneumococcal Carriage Working Group
-
Satzke C, Turner P, Virolainen-Julkunen A, et al. Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. Vaccine 2013; 32: 165–179.
-
(2013)
Vaccine
, vol.32
, pp. 165-179
-
-
Satzke, C.1
Turner, P.2
Virolainen-Julkunen, A.3
-
21
-
-
0017163544
-
Specimen collection and transport
-
Matsen JM, Ederer GM. Specimen collection and transport. Hum Pathol 1976; 7: 297–307.
-
(1976)
Hum Pathol
, vol.7
, pp. 297-307
-
-
Matsen, J.M.1
Ederer, G.M.2
-
22
-
-
84942089368
-
The benefit of taking a control sample when performing bronchoalveolar lavage
-
Linnane B, Clarke D, Murray P, et al. The benefit of taking a control sample when performing bronchoalveolar lavage. Thorax 2015; 70: 990.
-
(2015)
Thorax
, vol.70
, pp. 990
-
-
Linnane, B.1
Clarke, D.2
Murray, P.3
-
23
-
-
0033985571
-
Bronchoalveolar lavage in children
-
ERS Task Force on bronchoalveolar lavage in children. European Respiratory Society
-
de Blic J, Midulla F, Barbato A, et al. Bronchoalveolar lavage in children. ERS Task Force on bronchoalveolar lavage in children. European Respiratory Society. Eur Respir J 2000; 15: 217–231.
-
(2000)
Eur Respir J
, vol.15
, pp. 217-231
-
-
De Blic, J.1
Midulla, F.2
Barbato, A.3
-
24
-
-
84904245383
-
Streptococcus pneumoniae in saliva of Dutch primary school children
-
Wyllie AL, Chu MLJN, Schellens MHB, et al. Streptococcus pneumoniae in saliva of Dutch primary school children. PLoS One 2014; 9: e102045.
-
(2014)
PLoS One
, vol.9
, pp. e102045
-
-
Wyllie, A.L.1
Chu, M.L.J.N.2
Schellens, M.H.B.3
-
25
-
-
79952298772
-
Variability and diversity of nasopharyngeal microbiota in children: A metagenomic analysis
-
Bogaert D, Keijser B, Huse S, et al. Variability and diversity of nasopharyngeal microbiota in children: a metagenomic analysis. PLoS One 2011; 6: e17035.
-
(2011)
PLoS One
, vol.6
, pp. e17035
-
-
Bogaert, D.1
Keijser, B.2
Huse, S.3
-
26
-
-
84863292680
-
Deep sequencing analyses of low density microbial communities: Working at the boundary of accurate microbiota detection
-
Biesbroek G, Sanders EAM, Roeselers G, et al. Deep sequencing analyses of low density microbial communities: working at the boundary of accurate microbiota detection. PLoS One 2012; 7: e32942.
-
(2012)
PLoS One
, vol.7
, pp. e32942
-
-
Biesbroek, G.1
Sanders, E.A.M.2
Roeselers, G.3
-
27
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Meth 2010; 7: 335–336.
-
(2010)
Nat Meth
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
-
28
-
-
84941763152
-
Pathogens, commensal symbionts, and pathobionts: Discovery and functional effects on the host
-
Hornef M. Pathogens, commensal symbionts, and pathobionts: discovery and functional effects on the host. ILAR J 2015; 56: 159–162.
-
(2015)
ILAR J
, vol.56
, pp. 159-162
-
-
Hornef, M.1
-
30
-
-
84875068215
-
Viral and bacterial interactions in the upper respiratory tract
-
Bosch AATM, Biesbroek G, Trzciński K, et al. Viral and bacterial interactions in the upper respiratory tract. PLoS Pathog 2013; 9: e1003057.
-
(2013)
PLoS Pathog
, vol.9
, pp. e1003057
-
-
Bosch, A.A.T.M.1
Biesbroek, G.2
Trzciński, K.3
-
31
-
-
84907292693
-
The impact of breastfeeding on nasopharyngeal microbial communities in infants
-
Biesbroek G, Bosch AATM, Wang X, et al. The impact of breastfeeding on nasopharyngeal microbial communities in infants. Am J Respir Crit Care Med 2014; 190: 298–308.
-
(2014)
Am J Respir Crit Care Med
, vol.190
, pp. 298-308
-
-
Biesbroek, G.1
Bosch, A.A.T.M.2
Wang, X.3
-
33
-
-
84919771657
-
Respiratory microbiota: Addressing clinical questions, informing clinical practice
-
Rogers GB, Shaw D, Marsh RL, et al. Respiratory microbiota: addressing clinical questions, informing clinical practice. Thorax 2015; 70: 74–81.
-
(2015)
Thorax
, vol.70
, pp. 74-81
-
-
Rogers, G.B.1
Shaw, D.2
Marsh, R.L.3
-
34
-
-
79960004119
-
Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res 2011; 39: W475–W478.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W475-W478
-
-
Letunic, I.1
Bork, P.2
-
36
-
-
67650712233
-
Lung disease at diagnosis in infants with cystic fibrosis detected by newborn screening
-
Sly PD, Brennan S, Gangell C, et al., on behalf of the Australian Respiratory Early Surveillance Team for Cystic Fibrosis (AREST-CF). Lung disease at diagnosis in infants with cystic fibrosis detected by newborn screening. Am J Respir Crit Care Med 2009; 180: 146–152.
-
(2009)
Am J Respir Crit Care Med
, vol.180
, pp. 146-152
-
-
Sly, P.D.1
Brennan, S.2
Gangell, C.3
-
37
-
-
84878000440
-
Risk factors for bronchiectasis in children with cystic fibrosis
-
Sly PD, Gangell CL, Chen L, et al. Risk factors for bronchiectasis in children with cystic fibrosis. N Engl J Med 2013; 368: 1963–1970.
-
(2013)
N Engl J Med
, vol.368
, pp. 1963-1970
-
-
Sly, P.D.1
Gangell, C.L.2
Chen, L.3
-
38
-
-
84926478997
-
Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods
-
Zemanick ET, Wagner BD, Robertson CE, et al. Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods. Ann Am Thorac Soc 2015; 12: 221–229.
-
(2015)
Ann Am Thorac Soc
, vol.12
, pp. 221-229
-
-
Zemanick, E.T.1
Wagner, B.D.2
Robertson, C.E.3
-
39
-
-
77953554827
-
Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa
-
Klepac-Ceraj V, Lemon KP, Martin TR, et al. Relationship between cystic fibrosis respiratory tract bacterial communities and age, genotype, antibiotics and Pseudomonas aeruginosa. Environ Microbiol 2010; 12: 1293–1303.
-
(2010)
Environ Microbiol
, vol.12
, pp. 1293-1303
-
-
Klepac-Ceraj, V.1
Lemon, K.P.2
Martin, T.R.3
-
40
-
-
77955292433
-
Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients
-
Cox MJ, Allgaier M, Taylor B, et al. Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients. PLoS One 2010; 5: e11044.
-
(2010)
PLoS One
, vol.5
, pp. e11044
-
-
Cox, M.J.1
Allgaier, M.2
Taylor, B.3
-
41
-
-
84864370470
-
Microbial diversity in the cystic fibrosis airways: Where is thy sting?
-
VanDevanter DR, LiPuma JJ. Microbial diversity in the cystic fibrosis airways: where is thy sting? Future Microbiol 2012; 7: 801–803.
-
(2012)
Future Microbiol
, vol.7
, pp. 801-803
-
-
VanDevanter, D.R.1
LiPuma, J.J.2
-
42
-
-
84924981899
-
The microbiome in pediatric cystic fibrosis patients: The role of shared environment suggests a window of intervention
-
Hampton TH, Green DM, Cutting GR, et al. The microbiome in pediatric cystic fibrosis patients: the role of shared environment suggests a window of intervention. Microbiome 2014; 2: 14.
-
(2014)
Microbiome
, vol.2
, pp. 14
-
-
Hampton, T.H.1
Green, D.M.2
Cutting, G.R.3
-
43
-
-
0026377765
-
Predictive value of oropharyngeal cultures for identifying lower airway bacteria in cystic fibrosis patients
-
Ramsey BW, Wentz KR, Smith AL, et al. Predictive value of oropharyngeal cultures for identifying lower airway bacteria in cystic fibrosis patients. Am Rev Respir Dis 1991; 144: 331–337.
-
(1991)
Am Rev Respir Dis
, vol.144
, pp. 331-337
-
-
Ramsey, B.W.1
Wentz, K.R.2
Smith, A.L.3
-
44
-
-
84942239416
-
Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography
-
Dickson RP, Erb-Downward JR, Freeman CM, et al. Spatial variation in the healthy human lung microbiome and the adapted island model of lung biogeography. Ann Am Thorac Soc 2015; 12: 821–830.
-
(2015)
Ann Am Thorac Soc
, vol.12
, pp. 821-830
-
-
Dickson, R.P.1
Erb-Downward, J.R.2
Freeman, C.M.3
-
45
-
-
80053122563
-
Topographical continuity of bacterial populations in the healthy human respiratory tract
-
Charlson ES, Bittinger K, Haas AR, et al. Topographical continuity of bacterial populations in the healthy human respiratory tract. Am J Respir Crit Care Med 2011; 184: 957–963.
-
(2011)
Am J Respir Crit Care Med
, vol.184
, pp. 957-963
-
-
Charlson, E.S.1
Bittinger, K.2
Haas, A.R.3
-
46
-
-
84961169184
-
Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis lung disease
-
Hogan DA, Willger SD, Dolben EL, et al. Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis lung disease. PLoS One 2016; 11: e0149998.
-
(2016)
PLoS One
, vol.11
, pp. e0149998
-
-
Hogan, D.A.1
Willger, S.D.2
Dolben, E.L.3
|